Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_00946
- Subject:
- NM_019390.3
- Aligned Length:
- 2005
- Identities:
- 1228
- Gaps:
- 632
Alignment
Query 1 ATGGAGACCCCGTCCCAGCGGCGCGCCACCCGCAGCGGGGCGCAGGCCAGCTCCACTCCGCTGTCGCCCACCCG 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CATCACCCGGCTGCAGGAGAAGGAGGACCTGCAGGAGCTCAATGATCGCTTGGCGGTCTACATCGACCGTGTGC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 GCTCGCTGGAAACGGAGAACGCAGGGCTGCGCCTTCGCATCACCGAGTCTGAAGAGGTGGTCAGCCGCGAGGTG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TCCGGCATCAAGGCCGCCTACGAGGCCGAGCTCGGGGATGCCCGCAAGACCCTTGACTCAGTAGCCAAGGAGCG 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CGCCCGCCTGCAGCTGGAGCTGAGCAAAGTGCGTGAGGAGTTTAAGGAGCTGAAAGCG------CGCAATACCA 364
|.|.| |||.||| |||||.||||
Sbjct 1 --------------------------------------------ATGGG--GAACGCGGAGGGCCGCAACACCA 28
Query 365 AGAAGGAGGGTGACCTGATAGCTGCTCAGGCTCGGCTGAAGGACCTGGAGGCTCTGCTGAACTCCAAGGAGGCC 438
||||||||||.|||.||.|.|||||.|||||.|||||.||||||||.||||||||.||.|||||||||||.||.
Sbjct 29 AGAAGGAGGGGGACTTGTTGGCTGCGCAGGCCCGGCTCAAGGACCTCGAGGCTCTTCTCAACTCCAAGGAAGCT 102
Query 439 GCACTGAGCACTGCTCTCAGTGAGAAGCGCACGCTGGAGGGCGAGCTGCATGATCTGCGGGGCCAGGTGGCCAA 512
||.|||||||||||||||||||||||||||||..|||||||||||||.|||||.||||||||.|||||.|||||
Sbjct 103 GCCCTGAGCACTGCTCTCAGTGAGAAGCGCACATTGGAGGGCGAGCTCCATGACCTGCGGGGGCAGGTAGCCAA 176
Query 513 GCTTGAGGCAGCCCTAGGTGAGGCCAAGAAGCAACTTCAGGATGAGATGCTGCGGCGGGTGGATGCTGAGAACA 586
|||||||||.|||||.||.|||||.||||||||.||||||||||||||||||.||||.||||||||||||||||
Sbjct 177 GCTTGAGGCGGCCCTGGGAGAGGCTAAGAAGCAGCTTCAGGATGAGATGCTGAGGCGAGTGGATGCTGAGAACA 250
Query 587 GGCTGCAGACCATGAAGGAGGAACTGGACTTCCAGAAGAACATCTACAGTGAGGAGCTGCGTGAGACCAAGCGC 660
||||.|||||..||||||||||.||.|||||||||||||||||.|||||.|||||.||||||||||||||||||
Sbjct 251 GGCTACAGACGCTGAAGGAGGAGCTTGACTTCCAGAAGAACATTTACAGCGAGGAACTGCGTGAGACCAAGCGC 324
Query 661 CGTCATGAGACCCGACTGGTGGAGATTGACAATGGGAAGCAGCGTGAGTTTGAGAGCCGGCTGGCGGATGCGCT 734
||.||||||||.||.||.||||||||.||.||.|||||||||||.||||||||||||||||||||.|||||.||
Sbjct 325 CGGCATGAGACGCGGCTTGTGGAGATCGATAACGGGAAGCAGCGAGAGTTTGAGAGCCGGCTGGCAGATGCCCT 398
Query 735 GCAGGAACTGCGGGCCCAGCATGAGGACCAGGTGGAGCAGTATAAGAAGGAGCTGGAGAAGACTTATTCTGCCA 808
||||||.||||||||.||||||||||||||||||||.|||||||||||||||||.||.|||||.||.||.||||
Sbjct 399 GCAGGAGCTGCGGGCTCAGCATGAGGACCAGGTGGAACAGTATAAGAAGGAGCTAGAAAAGACATACTCCGCCA 472
Query 809 AGCTGGACAATGCCAGGCAGTCTGCTGAGAGGAACAGCAACCTGGTGGGGGCTGCCCACGAGGAGCTGCAGCAG 882
|||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||.|||||.|||||||||
Sbjct 473 AGCTGGATAATGCCAGGCAGTCTGCTGAGAGGAACAGCAACCTCGTGGGGGCTGCCCATGAGGAACTGCAGCAG 546
Query 883 TCGCGCATCCGCATCGACAGCCTCTCTGCCCAGCTCAGCCAGCTCCAGAAGCAGCTGGCAGCCAAGGAGGCGAA 956
||.||.||||||||.|||||||||||.||||||||||||||||||||.||||||.||||||||||||||||.||
Sbjct 547 TCTCGAATCCGCATTGACAGCCTCTCGGCCCAGCTCAGCCAGCTCCAAAAGCAGTTGGCAGCCAAGGAGGCAAA 620
Query 957 GCTTCGAGACCTGGAGGACTCACTGGCCCGTGAGCGGGACACCAGCCGGCGGCTGCTGGCGGAAAAGGAGCGGG 1030
|||.||.||||||||||||||.||||||||||||||.||.|||||||||||.||||||||.||.||.|||||.|
Sbjct 621 GCTGCGTGACCTGGAGGACTCGCTGGCCCGTGAGCGCGATACCAGCCGGCGCCTGCTGGCTGAGAAAGAGCGAG 694
Query 1031 AGATGGCCGAGATGCGGGCAAGGATGCAGCAGCAGCTGGACGAGTACCAGGAGCTTCTGGACATCAAGCTGGCC 1104
|||||||.|||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 695 AGATGGCGGAGATGCGGGCGAGGATGCAGCAGCAGCTGGACGAGTACCAGGAGCTGCTGGACATCAAGCTGGCC 768
Query 1105 CTGGACATGGAGATCCACGCCTACCGCAAGCTCTTGGAGGGCGAGGAGGAGAGGCTACGCCTGTCCCCCAGCCC 1178
|||||||||||||||||.|||||.||.|||||..||||||||||||||||||||||.|||||||||||||||||
Sbjct 769 CTGGACATGGAGATCCATGCCTATCGAAAGCTGCTGGAGGGCGAGGAGGAGAGGCTGCGCCTGTCCCCCAGCCC 842
Query 1179 TACCTCGCAGCGCAGCCGTGGCCGTGCTTCCTCTCACTCATCCCAGACACAGGGTGGGGGCAGCGTCACCAAAA 1252
||||||||||||||||||||||||.||.|||||.||||||||||||.|.||||||||.||||||||||||||||
Sbjct 843 TACCTCGCAGCGCAGCCGTGGCCGCGCCTCCTCCCACTCATCCCAGTCTCAGGGTGGAGGCAGCGTCACCAAAA 916
Query 1253 AGCGCAAACTGGAGTCCACTGAGAGCCGCAGCAGCTTCTCACAGCACGCACGCACTAGCGGGCGCGTGGCCGTG 1326
|||||||.||||||||..|.||||||||.|||||||||||.|||||.||.||||||||||||||.|||||.||.
Sbjct 917 AGCGCAAGCTGGAGTCTTCCGAGAGCCGGAGCAGCTTCTCGCAGCATGCTCGCACTAGCGGGCGTGTGGCGGTA 990
Query 1327 GAGGAGGTGGATGAGGAGGGCAAGTTTGTCCGGCTGCGCAACAAGTCCAATGAGGACCAGTCCATGGGCAATTG 1400
|||||.||.|||||.|||||.|||||.||.||||||||||||||||||||.||||||||||||||||||||.||
Sbjct 991 GAGGAAGTCGATGAAGAGGGAAAGTTCGTGCGGCTGCGCAACAAGTCCAACGAGGACCAGTCCATGGGCAACTG 1064
Query 1401 GCAGATCAAGCGCCAGAATGGAGATGATCCCTTGCTGACTTACCGGTTCCCACCAAAGTTCACCCTGAAGGCTG 1474
||||||||.|||.||||||||.||.|||||.|||.||||.||.||.||||||||.|||||||||||.|||||||
Sbjct 1065 GCAGATCAGGCGTCAGAATGGTGACGATCCTTTGATGACCTATCGCTTCCCACCGAAGTTCACCCTAAAGGCTG 1138
Query 1475 GGCAGGTGGTGACGATCTGGGCTGCAGGAGCTGGGGCCACCCACAGCCCCCCTACCGACCTGGTGTGGAAGGCA 1548
|||||||||||||||||||||||.|||||||||||||||||||.|||||||||||.|||.|||||||||||||.
Sbjct 1139 GGCAGGTGGTGACGATCTGGGCTTCAGGAGCTGGGGCCACCCATAGCCCCCCTACTGACTTGGTGTGGAAGGCG 1212
Query 1549 CAGAACACCTGGGGCTGCGGGAACAGCCTGCGTACGGCTCTCATCAACTCCACTGGGGAAGAAGTGGCCATGCG 1622
|||||||||||||||||.||||.||||||.||.||.||||||||||||||||||||.|||||||||||||||||
Sbjct 1213 CAGAACACCTGGGGCTGTGGGAGCAGCCTTCGCACCGCTCTCATCAACTCCACTGGAGAAGAAGTGGCCATGCG 1286
Query 1623 CAAGCTGGTGCGCTCAGTGACTGTGGTTGAGGACGACGAGGAT------GAGGATGGAGATGACCTGCTCCATC 1690
||||||||||||||||.||||..|||||||||||.|.|||||| |||||||||||.||.||.|||||||
Sbjct 1287 CAAGCTGGTGCGCTCACTGACCATGGTTGAGGACAATGAGGATGACGACGAGGATGGAGAAGAGCTCCTCCATC 1360
Query 1691 ACCACCACG-GCTCCCACTGCAGCAGCTCGGGGGACCCCGCTGAGTACAACCTGCGCTCGCGCACCGTGCTGTG 1763
||||||..| | |.|| ||||| |.||||
Sbjct 1361 ACCACCGTGTG-----AGTG--GCAGC--------CGCCGC--------------------------------- 1386
Query 1764 CGGGACCTGCGGGCAGCCTGCCGACAAGGCATCTGCCAGCGGCTCAGGAGCCCAGGTGGGCGGACCCATCTCCT 1837
Sbjct 1387 -------------------------------------------------------------------------- 1386
Query 1838 CTGGCTCTTCTGCCTCCAGTGTCACGGTCACTCGCAGCTACCGCAGTGTGGGGGGCAGTGGGGGTGGCAGCTTC 1911
Sbjct 1387 -------------------------------------------------------------------------- 1386
Query 1912 GGGGACAATCTGGTCACCCGCTCCTACCTCCTGGGCAACTCCAGCCCCCGAACCCAGAGCCCCCAGAACTGCAG 1985
Sbjct 1387 -------------------------------------------------------------------------- 1386
Query 1986 CATCATG 1992
Sbjct 1387 ------- 1386
