Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_00973
- Subject:
- NM_001285454.1
- Aligned Length:
- 1225
- Identities:
- 876
- Gaps:
- 209
Alignment
Query 1 ATGGCTGAGCCCCGCCAGGAGTTCGAAGTGATGGAAGATCACGCTGGGACGTACGGGTTGGGGGACAGGAAAGA 74
||||||||.||.|||||||||||.||....||||||||.||.||||| |||
Sbjct 1 ATGGCTGACCCTCGCCAGGAGTTTGACACAATGGAAGACCATGCTGG------------------------AGA 50
Query 75 TCAGGGGGGCTACACCATGCACCAAGACCAAGAGGGTGACACGGACGCTGGCCTGAAAGCTGAAGAAGCAGGCA 148
| |||||..|||.||||||||||||.||.||||.||||..||||.|.|||||.|||||||||||||
Sbjct 51 T---------TACACTCTGCTCCAAGACCAAGAAGGAGACATGGACCATGGCTTAAAAGCCGAAGAAGCAGGCA 115
Query 149 TTGGAGACACCCCCAGCCTGGAAGACGAAGCTGCTGGTCACGTGACCCAAGCTCGCATGGTCAGTAAAAGCAAA 222
|.|||||||||||.|.||.|||.|||.||||.|||||.||.|||||.||||||||..|||.| ||||||
Sbjct 116 TCGGAGACACCCCGAACCAGGAGGACCAAGCCGCTGGGCATGTGACTCAAGCTCGTGTGGCC------AGCAAA 183
Query 223 GACGGGACTGGAAGCGATGACAAAAAAGCCAAGGGGGCTGATGGTAAAA------CGAAGATCGCCACACCGCG 290
|||.||||.||||..||.||.||.|||||||||||.||||||||.|||| ||||||||||||||||.||
Sbjct 184 GACAGGACAGGAAATGACGAGAAGAAAGCCAAGGGCGCTGATGGCAAAACCGGGGCGAAGATCGCCACACCTCG 257
Query 291 GGGAGCAGCCCCTCCAGGCCAGAAGGGCCAGGCCAACGCCACCAGGATTCCAGCAAAAACCCCGCCC-GCTCCA 363
||||||||||.||||.|.||||||||||..|.||||||||||||||||.||.||.||.|||.||||| || ||.
Sbjct 258 GGGAGCAGCCTCTCCGGCCCAGAAGGGCACGTCCAACGCCACCAGGATCCCGGCCAAGACCACGCCCAGC-CCT 330
Query 364 AAGACACCACCCAGCTCTGGTGAACCTCCAAAATCAGGGGATCGCAGCGGCTACAGCAGCCCCGGCTCCCCAGG 437
|||||.||.||..|.||.||||||||.||||||||.||.||.||.|||||||||||||||||||||||.||.||
Sbjct 331 AAGACTCCTCCAGGGTCAGGTGAACCACCAAAATCCGGAGAACGAAGCGGCTACAGCAGCCCCGGCTCTCCCGG 404
Query 438 CACTCCCGGCAGCCGCTCCCGCACCCCGTCCCTTCCAACCCCACCCACCCGGGAGCCCAAGAAGGTGGCAGTGG 511
.||.||.|||||.|||||.||||||||.|||||.|||||.||.|||||||||||||||||||||||||||||||
Sbjct 405 AACGCCTGGCAGTCGCTCGCGCACCCCATCCCTACCAACACCGCCCACCCGGGAGCCCAAGAAGGTGGCAGTGG 478
Query 512 TCCGTACTCCACCCAAGTCGCCGTCTTCCGCCAAGAGCCGCCTGCAGACAGCCCCCGTGCCCATGCCAGACCTG 585
||||.|||||.||.|||||.||.||..|....|||||||||||||||||.|||||.|||||||||||||||||.
Sbjct 479 TCCGCACTCCCCCTAAGTCACCATCAGCTAGTAAGAGCCGCCTGCAGACTGCCCCTGTGCCCATGCCAGACCTA 552
Query 586 AAGAATGTCAAGTCCAAGATCGGCTCCACTGAGAACCTGAAGCACCAGCCGGGAGGCGGGAAGGTGCAGATAAT 659
||||||||||.|||.|||||.|||||.|||||||||||||||||||||||.|||||.||.|||
Sbjct 553 AAGAATGTCAGGTCGAAGATTGGCTCTACTGAGAACCTGAAGCACCAGCCAGGAGGTGGCAAG----------- 615
Query 660 TAATAAGAAGCTGGATCTTAGCAACGTCCAGTCCAAGTGTGGCTCAAAGGATAATATCAAACACGTCCCGGGAG 733
Sbjct 616 -------------------------------------------------------------------------- 615
Query 734 GCGGCAGTGTGCAAATAGTCTACAAACCAGTTGACCTGAGCAAGGTGACCTCCAAGTGTGGCTCATTAGGCAAC 807
|||||||||||||||||.||.||.|||||||||||.||||||||||||||||||||.|||||.|||
Sbjct 616 --------GTGCAAATAGTCTACAAGCCGGTGGACCTGAGCAAAGTGACCTCCAAGTGTGGCTCGTTAGGGAAC 681
Query 808 ATCCATCATAAACCAGGAGGTGGCCAGGTGGAAGTAAAATCTGAGAAGCTTGACTTCAAGGACAGAGTCCAGTC 881
||||||||.||.|||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||
Sbjct 682 ATCCATCACAAGCCAGGAGGTGGCCAGGTGGAAGTAAAATCAGAGAAGCTGGACTTCAAGGACAGAGTCCAGTC 755
Query 882 GAAGATTGGGTCCCTGGACAATATCACCCACGTCCCTGGCGGAGGAAATAAAAAGATTGAAACCCACAAGCTGA 955
|||||||||.|||.||||.||||||||||||||||||||.|||||.|||||.||||||||||||||||||||||
Sbjct 756 GAAGATTGGCTCCTTGGATAATATCACCCACGTCCCTGGAGGAGGGAATAAGAAGATTGAAACCCACAAGCTGA 829
Query 956 CCTTCCGCGAGAACGCCAAAGCCAAGACAGACCACGGGGCGGAGATCGTGTACAAGTCGCCAGTGGTGTCTGGG 1029
|||||.|.|||||.||||||||||||||||||||.||.||.||.||.|||||.|||||.||.||||||||||||
Sbjct 830 CCTTCAGGGAGAATGCCAAAGCCAAGACAGACCATGGAGCAGAAATTGTGTATAAGTCACCCGTGGTGTCTGGG 903
Query 1030 GACACGTCTCCACGGCATCTCAGCAATGTCTCCTCCACCGGCAGCATCGACATGGTAGACTCGCCCCAGCTCGC 1103
|||||.|||||||||||.|||||||||||.||.|||||.|||||||||||||||||.|||||.||.|||||.||
Sbjct 904 GACACATCTCCACGGCACCTCAGCAATGTGTCTTCCACGGGCAGCATCGACATGGTGGACTCACCACAGCTTGC 977
Query 1104 CACGCTAGCTGACGAGGTGTCTGCCTCCCTGGCCAAGCAGG--------------------------GTTTG-- 1149
|||.|||||.||.||.||||||||.|||.|||||||||||| |||||
Sbjct 978 CACACTAGCCGATGAAGTGTCTGCTTCCTTGGCCAAGCAGGGAAAAGCTGCTTTACTGAGTTCTCAAGTTTGGA 1051
Query 1150 ----------------------------------------- 1149
Sbjct 1052 ACTACAGCCATGATTTGGCCACCATTACAGACCTGGGACTT 1092