Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00999
Subject:
XM_006498864.3
Aligned Length:
1626
Identities:
1066
Gaps:
489

Alignment

Query    1  ---------------------------------------ATGGACGGAGTAGGGGTTCCCGCTTCCATGTACGG  35
                                                   |||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCGCAAAGGTACGATGAGCTGCCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCCGCTTCCATGTACGG  74

Query   36  AGACCCTCACGCGCCGCGGCCGATCCCCCCGGTTCACCACCTGAACCACGGGCCGCCGCTCCACGCCACACAGC  109
            ||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.||||
Sbjct   75  AGACCCTCACGCGCCGCGGCCGATCCCCCCGGTTCACCACCTAAACCACGGGCCGCCGCTCCACGCCACGCAGC  148

Query  110  ACTACGGCGCGCACGCCCCGCACCCCAATGTCATGCCGGCCAGTATGGGATCCGCTGTCAACGACGCCTTGAAG  183
            |||||||||||||||||||||||||||||||||||||.|||||.||||||||.||||||||||||||||||||.
Sbjct  149  ACTACGGCGCGCACGCCCCGCACCCCAATGTCATGCCAGCCAGCATGGGATCTGCTGTCAACGACGCCTTGAAA  222

Query  184  CGGGACAAGGACGCGATCTATGGGCACCCGTTGTTTCCTCTGTTAGCTCTGGTCTTTGAGAAGTGCGAGCTGGC  257
            .|.|||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct  223  AGAGACAAGGACGCAATCTATGGGCACCCGTTGTTTCCTCTGTTAGCTCTGGTTTTTGAGAAGTGCGAGCTGGC  296

Query  258  GACCTGCACTCCCCGGGAACCTGGAGTGGCTGGCGGAGACGTCTGCTCCTCCGACTCCTTCAACGAGGACATCG  331
            |||||||||||||||||||||.||||||||.||||||||||||||.|||||.||||||||||||||||||||||
Sbjct  297  GACCTGCACTCCCCGGGAACCCGGAGTGGCCGGCGGAGACGTCTGTTCCTCTGACTCCTTCAACGAGGACATCG  370

Query  332  CGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCACTTTTTTCCTCAAATCCAGAGCTGGACAATTTGATGATA  405
            ||||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||.||||||||||||
Sbjct  371  CGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCTCTTTTTTCCTCAAACCCAGAGCTGGATAATTTGATGATA  444

Query  406  CAAGCAATACAAGTACTAAGGTTTCATCTTTTGGAGTTAGAAAAGGTCCACGAACTGTGCGATAACTTCTGCCA  479
            ||||||||.|||||||||||||||||||||.|||||||||||||||||||||||||.||.||||||||||||||
Sbjct  445  CAAGCAATTCAAGTACTAAGGTTTCATCTTCTGGAGTTAGAAAAGGTCCACGAACTATGTGATAACTTCTGCCA  518

Query  480  CCGATACATTAGCTGTTTGAAGGGGAAAATGCCCATCGACCTCGTCATTGATGAAAGAGACGGCAGCTCCAAGT  553
            |||.||||||||||||||||||||.|||||||||||.||||||||.||||||||.|||||.||.||||||||||
Sbjct  519  CCGGTACATTAGCTGTTTGAAGGGAAAAATGCCCATTGACCTCGTGATTGATGAGAGAGATGGAAGCTCCAAGT  592

Query  554  CAGATCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCTGACCATAACCCTTCTTCTTGGCGAGACCACGAT  627
            ||||||||||||||||||||||||||||||||||||||||.|||||.||||||||.||.|||||||||||||||
Sbjct  593  CAGATCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCCGACCACAACCCTTCATCCTGGCGAGACCACGAT  666

Query  628  GATGCAACCTCAACCCACTCAGCAGGCACCCCAGGGCCCTCCAGTGGGGGCCATGCTTCCCAGAGCGGAGACAA  701
            ||.|||||||||||.|||||.||||||||||||||.|||||||||||||||||||||||||||||.||||||||
Sbjct  667  GACGCAACCTCAACGCACTCCGCAGGCACCCCAGGACCCTCCAGTGGGGGCCATGCTTCCCAGAGTGGAGACAA  740

Query  702  CAGCAGTGAGCA--------------------------------------------------------------  713
            ||||||||||||                                                              
Sbjct  741  CAGCAGTGAGCAAGGCGCTTCGGAGACTGAGGCTGACCATTTACTATTGTGGAAGCCCATGACTGATCGCACAG  814

Query  714  --------------------------------------------------------------------------  713
                                                                                      
Sbjct  815  GATGCGTTTCAGTGCAAATGTCAAGAGAAGATAGAGAAGAAAGCAGAGAGGGAAAACACTCTCCACAACCACTT  888

Query  714  -----------------------------------------------------AGGGGATGGTTTAGACAACAG  734
                                                                 |||.|||||.|||||||||||
Sbjct  889  GAAAACATCATCATTCCCTGTCAGCCGCCCTTTCGTGGGGAAAGCGAAGCTGGAGGCGATGGGTTAGACAACAG  962

Query  735  TGTAGCTTCACCTGGTACAGGTGACGATGATGATCCGGATAAGGACAAAAAACGCCAGAAGAAAAGAGGCATTT  808
            .||||||||||||||.||||||||.||.||.|||||.||.||||||||||||||||||||||||||||||||.|
Sbjct  963  CGTAGCTTCACCTGGCACAGGTGATGACGACGATCCAGACAAGGACAAAAAACGCCAGAAGAAAAGAGGCATAT  1036

Query  809  TCCCCAAAGTAGCAACAAATATCATGAGAGCATGGCTCTTCCAGCATCTCACACATCCGTACCCTTCCGAAGAG  882
            ||||||||||.||.|||||||||||||||||.|||||||||||||||||||||||.|||||||||||.|||||.
Sbjct 1037  TCCCCAAAGTCGCGACAAATATCATGAGAGCGTGGCTCTTCCAGCATCTCACACACCCGTACCCTTCAGAAGAA  1110

Query  883  CAGAAGAAACAGTTAGCGCAAGACACAGGACTTACAATTCTCCAAGTAAACAACTGGTTTATTAATGCCAGAAG  956
            ||||||||||||||||||||||||||.|||||.||||||||.|||||.||||||||||||||.|||||||||||
Sbjct 1111  CAGAAGAAACAGTTAGCGCAAGACACGGGACTGACAATTCTGCAAGTGAACAACTGGTTTATCAATGCCAGAAG  1184

Query  957  AAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAG---------------------CAGTGAGCCAAGGAG  1009
            |||||||||.||||||||||||||||||||||||||||                     |||||||||||||||
Sbjct 1185  AAGAATAGTGCAGCCCATGATTGACCAGTCAAATCGAGCAGGTTTTCTTCTTGATCCTTCAGTGAGCCAAGGAG  1258

Query 1010  CAGCATATAGTCCAGAGGGTCAGCCCATGGGGAGCTTTGTGTTGGATGGTCAGCAACACATGGGGATCCGGCCT  1083
            ||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CAGCGTATAGTCCAGAGGGTCAGCCCATGGGGAGCTTTGTGTTGGATGGTCAGCAACACATGGGGATCCGGCCT  1332

Query 1084  GCA--------------------GGAC-------CTATGAGTGG---AATGGGCATGAATATGG-GCATGGATG  1126
            |||                    ||||       ||..|.||||   ||||||.|||..||||| .||      
Sbjct 1333  GCAGGTTTGCAGAGCATGCCAGGGGACTACGTTTCTCAGGGTGGTCCAATGGGAATGGGTATGGCCCA------  1400

Query 1127  GGCAA-TGGCACT-------ACATG-------------------------------------------------  1143
            |.||| |..||||       |.|||                                                 
Sbjct 1401  GCCAAGTTACACTCCTCCCCAGATGACCCCACACCCTACTCAGTTAAGACATGGACCCCCAATGCATTCATATT  1474

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1475  TGCCAAGCCATCCCCACCACCCAGCCATGGTGATGCACGGAGGACCCCCTACCCACCCTGGAATGACTATGTCA  1548

Query 1144  ------------------------------------------------------------------------  1143
                                                                                    
Sbjct 1549  GCACAGAGCCCCACAATGTTAAATTCTGTAGATCCCAATGTTGGCGGACAGGTTATGGACATTCATGCCCAA  1620

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