Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_00999
- Subject:
- XR_001751290.2
- Aligned Length:
- 3112
- Identities:
- 1066
- Gaps:
- 2046
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACATGTGGGCTGCTGACGGGCCGCTCGTAACCTTCAGTTCGGGGGCTTGACAATTTTTTTCTTCTTTTTCTTCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTTTCTTTTCTTTCTTTTTTTTTCCAACTGAGGGGAAGAGAAGAGAAAGAGGGGGAAAGGAGGACCGAAGAGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAGGAGGGGAGGGGGGAGGAGGAGGAGGTGGAGGAGGAGGAGGAAGATCAGGAGGAGGAGGAAGAAGAGGAAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAGAGAAAAAGAAGAAATATCACAGAAAAAAAAATTCTTCGTTGTCTAGACTGGGCTTTTTTTCCCCCCTAAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAATAGCATATTGGAGAATTGGGAGAAGTCTCTTTGGTTTGGAAAAAAAAAAAAGGAATCTTCAGCCTAGATCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTTTCTTATCCGGACTGGGATATTAAATATACGACACATCCAGGAGTTTATTGGAGCGCAGACTGATGGCGCAA 444
Query 1 ------------------------------ATGGACGGAGTAGGGGTTCCCGCTTCCATGTACGGAGACCCTCA 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGGTACGATGAGCTGCCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCCGCTTCCATGTACGGAGACCCTCA 518
Query 45 CGCGCCGCGGCCGATCCCCCCGGTTCACCACCTGAACCACGGGCCGCCGCTCCACGCCACACAGCACTACGGCG 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CGCGCCGCGGCCGATCCCCCCGGTTCACCACCTGAACCACGGGCCGCCGCTCCACGCCACACAGCACTACGGCG 592
Query 119 CGCACGCCCCGCACCCCAATGTCATGCCGGCCAGTATGGGATCCGCTGTCAACGACGCCTTGAAGCGGGACAAG 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CGCACGCCCCGCACCCCAATGTCATGCCGGCCAGTATGGGATCCGCTGTCAACGACGCCTTGAAGCGGGACAAG 666
Query 193 GACGCGATCTATGGGCACCCGTTGTTTCCTCTGTTAGCTCTGGTCTTTGAGAAGTGCGAGCTGGCGACCTGCAC 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GACGCGATCTATGGGCACCCGTTGTTTCCTCTGTTAGCTCTGGTCTTTGAGAAGTGCGAGCTGGCGACCTGCAC 740
Query 267 TCCCCGGGAACCTGGAGTGGCTGGCGGAGACGTCTGCTCCTCCGACTCCTTCAACGAGGACATCGCGGTCTTCG 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCCCCGGGAACCTGGAGTGGCTGGCGGAGACGTCTGCTCCTCCGACTCCTTCAACGAGGACATCGCGGTCTTCG 814
Query 341 CCAAGCAGGTTCGCGCCGAAAAGCCACTTTTTTCCTCAAATCCAGAGCTGGACAATTTGATGATACAAGCAATA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCAAGCAGGTTCGCGCCGAAAAGCCACTTTTTTCCTCAAATCCAGAGCTGGACAATTTGATGATACAAGCAATA 888
Query 415 CAAGTACTAAGGTTTCATCTTTTGGAGTTAGAAAAGGTCCACGAACTGTGCGATAACTTCTGCCACCGATACAT 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CAAGTACTAAGGTTTCATCTTTTGGAGTTAGAAAAGGTCCACGAACTGTGCGATAACTTCTGCCACCGATACAT 962
Query 489 TAGCTGTTTGAAGGGGAAAATGCCCATCGACCTCGTCATTGATGAAAGAGACGGCAGCTCCAAGTCAGATCATG 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TAGCTGTTTGAAGGGGAAAATGCCCATCGACCTCGTCATTGATGAAAGAGACGGCAGCTCCAAGTCAGATCATG 1036
Query 563 AAGAACTTTCAGGCTCCTCCACAAATCTCGCTGACCATAACCCTTCTTCTTGGCGAGACCACGATGATGCAACC 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AAGAACTTTCAGGCTCCTCCACAAATCTCGCTGACCATAACCCTTCTTCTTGGCGAGACCACGATGATGCAACC 1110
Query 637 TCAACCCACTCAGCAGGCACCCCAGGGCCCTCCAGTGGGGGCCATGCTTCCCAGAGCGGAGACAACAGCAGTGA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TCAACCCACTCAGCAGGCACCCCAGGGCCCTCCAGTGGGGGCCATGCTTCCCAGAGCGGAGACAACAGCAGTGA 1184
Query 711 GCAAGGGGATGGTTTAGACAACAGTGTAGCTTCACCTGGTACAGGTGACGATGATGATCCGGATAAGGACAAAA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GCAAGGGGATGGTTTAGACAACAGTGTAGCTTCACCTGGTACAGGTGACGATGATGATCCGGATAAGGACAAAA 1258
Query 785 AACGCCAGAAGAAAAGAGGCATTTTCCCCAAAGTAGCAACAAATATCATGAGAGCATGGCTCTTCCAGCATCTC 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AACGCCAGAAGAAAAGAGGCATTTTCCCCAAAGTAGCAACAAATATCATGAGAGCATGGCTCTTCCAGCATCTC 1332
Query 859 ACACATCCGTACCCTTCCGAAGAGCAGAAGAAACAGTTAGCGCAAGACACAGGACTTACAATTCTCCAAGTAAA 932
|||
Sbjct 1333 ACA----------------------------------------------------------------------- 1335
Query 933 CAACTGGTTTATTAATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAG------------ 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 ------GTTTATTAATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAGCAGGTTTTCTTC 1403
Query 995 ---------CAGTGAGCCAAGGAGCAGCATATAGTCCAGAGGGTCAGCCCATGGGGAGCTTTGTGTTGGATGGT 1059
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 TTGATCCTTCAGTGAGCCAAGGAGCAGCATATAGTCCAGAGGGTCAGCCCATGGGGAGCTTTGTGTTGGATGGT 1477
Query 1060 CAGCAACACATGGGGATCCGGCCTGCAGGACCTATGAGTGGAATGGGCATGAATATGGGCATGGATGGGCAATG 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 CAGCAACACATGGGGATCCGGCCTGCAGGACCTATGAGTGGAATGGGCATGAATATGGGCATGGATGGGCAATG 1551
Query 1134 GCACTACATG---------------------------------------------------------------- 1143
||||||||||
Sbjct 1552 GCACTACATGTAACCTTCATCATGTAAAGCAATCGCAAAGCAAGGGGGAAGTTTGCAGAGCATGCCAGGGGACT 1625
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 1626 ACGTTTCTCAGGGTGGTCCTATGGGAATGAGTATGGCACAGCCAAGTTACACTCCTCCCCAGATGACCCCACAC 1699
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 1700 CCTACTCAATTAAGACATGGACCCCCAATGCATTCATATTTGCCAAGCCATCCCCACCACCCAGCCATGATGAT 1773
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 1774 GCACGGAGGACCCCCTACCCACCCTGGAATGACTATGTCAGCACAGAGCCCCACAATGTTAAATTCTGTAGATC 1847
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 1848 CCAATGTTGGCGGACAGGTTATGGACATTCATGCCCAATAGTATAAGGGAACTCAAGGGAAAAGGAAACACACG 1921
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 1922 CAAAAACTATTTTAAGACTTTCTGAACTTTGACCAGATGTTGACACTTAATATGAAATTCCAGACAGCTGTGAT 1995
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 1996 TATTTTTTACTTTTGTCATTTTTCATCAAGCAACAGAGGACCAATGCAACAAGAACACAAATGTGAAATCATGG 2069
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 2070 GCTGACTGAGACAATTCTGTCCATGTAAAGATCCTCTGGAAAAAGACTCCGAGAGTTATAACTACTGTAGTATA 2143
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 2144 AATATAGGAACTAAGTTAAACTTGTACATTTCTGTTGATCACGCCGTTATGTTGCCTCAAATAGTTTTAGAAGA 2217
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 2218 GAAAAAAAAATATATCCTTGTTTTCCACACTATGTGTGTTGTTCCCAAAAGAATGACTGTTTTGGTTCATCAGT 2291
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 2292 GAATTCACCATCCAGGAGAGACTGTGGTATATATTTTAAACCTGTTGGGCCAATGAGAAAAGAACCACACTGGA 2365
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 2366 GATCATGATGAACTTTTGGCTGAACCTCATCACTCGAACTCCAGCTTCAAGAATGTGTTTTCATGCCCGGCCTT 2439
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 2440 TGTTCCTCCATAAATGTGTCCTTTAGTTTCAAACAGATCTTTATAGTTCGTGCTTCATAAGCCAATTCTTATTA 2513
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 2514 TTATTTTTGGGGGACTCTTCTTCAAAGAGCTTGCCAATGAAGATTTAAAGACAGAGCAGGAGCTTCTTCCAGGA 2587
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 2588 GTTCTGAGCCTTGGTTGTGGACAAAACAATCTTAAGTTGGGCAGCTTTCCTCAACACAAAAAAAAGTTATTAAT 2661
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 2662 GGTCATTGAACCATAACTAGGACTTTATCAGAAACTCAAAGCTTGGGGGATAAAAAGGAGCAAGAGAATACTGT 2735
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 2736 AACAAACTTCGTACAGAGTTCGGTCTATTAATTGTTTCATGTTAGATATTCTATGTGTTTACCTCAATTGAAAA 2809
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 2810 AAAAAAGAATGTTTTTGCTAGTATCAGATCTGCTGTGGAATTGGTATTGTATGTCCATGAATTCTTCTTTTCTC 2883
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 2884 AGCACGTGTTCCTCACTAGAAGAAAATGCTGTTACCTTTAAGCTTTGTCAAATTTACATTAAAATACTTGTATG 2957
Query 1144 -------------------------------------------------------------------------- 1143
Sbjct 2958 AGGACTGTGACGTTATGTTAAAAAAAAAAAGGTGTTAAGTCACAAAAAGCGGTAATAAATATTTCATTTTTGAT 3031
Query 1144 ---- 1143
Sbjct 3032 TTTT 3035
