Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00999
Subject:
XR_001751290.2
Aligned Length:
3112
Identities:
1066
Gaps:
2046

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACATGTGGGCTGCTGACGGGCCGCTCGTAACCTTCAGTTCGGGGGCTTGACAATTTTTTTCTTCTTTTTCTTCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTTTCTTTTCTTTCTTTTTTTTTCCAACTGAGGGGAAGAGAAGAGAAAGAGGGGGAAAGGAGGACCGAAGAGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGAGGAGGGGAGGGGGGAGGAGGAGGAGGTGGAGGAGGAGGAGGAAGATCAGGAGGAGGAGGAAGAAGAGGAAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAAGAGAAAAAGAAGAAATATCACAGAAAAAAAAATTCTTCGTTGTCTAGACTGGGCTTTTTTTCCCCCCTAAA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AAATAGCATATTGGAGAATTGGGAGAAGTCTCTTTGGTTTGGAAAAAAAAAAAAGGAATCTTCAGCCTAGATCA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTTTCTTATCCGGACTGGGATATTAAATATACGACACATCCAGGAGTTTATTGGAGCGCAGACTGATGGCGCAA  444

Query    1  ------------------------------ATGGACGGAGTAGGGGTTCCCGCTTCCATGTACGGAGACCCTCA  44
                                          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AGGTACGATGAGCTGCCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCCGCTTCCATGTACGGAGACCCTCA  518

Query   45  CGCGCCGCGGCCGATCCCCCCGGTTCACCACCTGAACCACGGGCCGCCGCTCCACGCCACACAGCACTACGGCG  118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CGCGCCGCGGCCGATCCCCCCGGTTCACCACCTGAACCACGGGCCGCCGCTCCACGCCACACAGCACTACGGCG  592

Query  119  CGCACGCCCCGCACCCCAATGTCATGCCGGCCAGTATGGGATCCGCTGTCAACGACGCCTTGAAGCGGGACAAG  192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CGCACGCCCCGCACCCCAATGTCATGCCGGCCAGTATGGGATCCGCTGTCAACGACGCCTTGAAGCGGGACAAG  666

Query  193  GACGCGATCTATGGGCACCCGTTGTTTCCTCTGTTAGCTCTGGTCTTTGAGAAGTGCGAGCTGGCGACCTGCAC  266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GACGCGATCTATGGGCACCCGTTGTTTCCTCTGTTAGCTCTGGTCTTTGAGAAGTGCGAGCTGGCGACCTGCAC  740

Query  267  TCCCCGGGAACCTGGAGTGGCTGGCGGAGACGTCTGCTCCTCCGACTCCTTCAACGAGGACATCGCGGTCTTCG  340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TCCCCGGGAACCTGGAGTGGCTGGCGGAGACGTCTGCTCCTCCGACTCCTTCAACGAGGACATCGCGGTCTTCG  814

Query  341  CCAAGCAGGTTCGCGCCGAAAAGCCACTTTTTTCCTCAAATCCAGAGCTGGACAATTTGATGATACAAGCAATA  414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCAAGCAGGTTCGCGCCGAAAAGCCACTTTTTTCCTCAAATCCAGAGCTGGACAATTTGATGATACAAGCAATA  888

Query  415  CAAGTACTAAGGTTTCATCTTTTGGAGTTAGAAAAGGTCCACGAACTGTGCGATAACTTCTGCCACCGATACAT  488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CAAGTACTAAGGTTTCATCTTTTGGAGTTAGAAAAGGTCCACGAACTGTGCGATAACTTCTGCCACCGATACAT  962

Query  489  TAGCTGTTTGAAGGGGAAAATGCCCATCGACCTCGTCATTGATGAAAGAGACGGCAGCTCCAAGTCAGATCATG  562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TAGCTGTTTGAAGGGGAAAATGCCCATCGACCTCGTCATTGATGAAAGAGACGGCAGCTCCAAGTCAGATCATG  1036

Query  563  AAGAACTTTCAGGCTCCTCCACAAATCTCGCTGACCATAACCCTTCTTCTTGGCGAGACCACGATGATGCAACC  636
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AAGAACTTTCAGGCTCCTCCACAAATCTCGCTGACCATAACCCTTCTTCTTGGCGAGACCACGATGATGCAACC  1110

Query  637  TCAACCCACTCAGCAGGCACCCCAGGGCCCTCCAGTGGGGGCCATGCTTCCCAGAGCGGAGACAACAGCAGTGA  710
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TCAACCCACTCAGCAGGCACCCCAGGGCCCTCCAGTGGGGGCCATGCTTCCCAGAGCGGAGACAACAGCAGTGA  1184

Query  711  GCAAGGGGATGGTTTAGACAACAGTGTAGCTTCACCTGGTACAGGTGACGATGATGATCCGGATAAGGACAAAA  784
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GCAAGGGGATGGTTTAGACAACAGTGTAGCTTCACCTGGTACAGGTGACGATGATGATCCGGATAAGGACAAAA  1258

Query  785  AACGCCAGAAGAAAAGAGGCATTTTCCCCAAAGTAGCAACAAATATCATGAGAGCATGGCTCTTCCAGCATCTC  858
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AACGCCAGAAGAAAAGAGGCATTTTCCCCAAAGTAGCAACAAATATCATGAGAGCATGGCTCTTCCAGCATCTC  1332

Query  859  ACACATCCGTACCCTTCCGAAGAGCAGAAGAAACAGTTAGCGCAAGACACAGGACTTACAATTCTCCAAGTAAA  932
            |||                                                                       
Sbjct 1333  ACA-----------------------------------------------------------------------  1335

Query  933  CAACTGGTTTATTAATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAG------------  994
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct 1336  ------GTTTATTAATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAGCAGGTTTTCTTC  1403

Query  995  ---------CAGTGAGCCAAGGAGCAGCATATAGTCCAGAGGGTCAGCCCATGGGGAGCTTTGTGTTGGATGGT  1059
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404  TTGATCCTTCAGTGAGCCAAGGAGCAGCATATAGTCCAGAGGGTCAGCCCATGGGGAGCTTTGTGTTGGATGGT  1477

Query 1060  CAGCAACACATGGGGATCCGGCCTGCAGGACCTATGAGTGGAATGGGCATGAATATGGGCATGGATGGGCAATG  1133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478  CAGCAACACATGGGGATCCGGCCTGCAGGACCTATGAGTGGAATGGGCATGAATATGGGCATGGATGGGCAATG  1551

Query 1134  GCACTACATG----------------------------------------------------------------  1143
            ||||||||||                                                                
Sbjct 1552  GCACTACATGTAACCTTCATCATGTAAAGCAATCGCAAAGCAAGGGGGAAGTTTGCAGAGCATGCCAGGGGACT  1625

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1626  ACGTTTCTCAGGGTGGTCCTATGGGAATGAGTATGGCACAGCCAAGTTACACTCCTCCCCAGATGACCCCACAC  1699

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1700  CCTACTCAATTAAGACATGGACCCCCAATGCATTCATATTTGCCAAGCCATCCCCACCACCCAGCCATGATGAT  1773

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1774  GCACGGAGGACCCCCTACCCACCCTGGAATGACTATGTCAGCACAGAGCCCCACAATGTTAAATTCTGTAGATC  1847

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1848  CCAATGTTGGCGGACAGGTTATGGACATTCATGCCCAATAGTATAAGGGAACTCAAGGGAAAAGGAAACACACG  1921

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1922  CAAAAACTATTTTAAGACTTTCTGAACTTTGACCAGATGTTGACACTTAATATGAAATTCCAGACAGCTGTGAT  1995

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1996  TATTTTTTACTTTTGTCATTTTTCATCAAGCAACAGAGGACCAATGCAACAAGAACACAAATGTGAAATCATGG  2069

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2070  GCTGACTGAGACAATTCTGTCCATGTAAAGATCCTCTGGAAAAAGACTCCGAGAGTTATAACTACTGTAGTATA  2143

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2144  AATATAGGAACTAAGTTAAACTTGTACATTTCTGTTGATCACGCCGTTATGTTGCCTCAAATAGTTTTAGAAGA  2217

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2218  GAAAAAAAAATATATCCTTGTTTTCCACACTATGTGTGTTGTTCCCAAAAGAATGACTGTTTTGGTTCATCAGT  2291

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2292  GAATTCACCATCCAGGAGAGACTGTGGTATATATTTTAAACCTGTTGGGCCAATGAGAAAAGAACCACACTGGA  2365

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2366  GATCATGATGAACTTTTGGCTGAACCTCATCACTCGAACTCCAGCTTCAAGAATGTGTTTTCATGCCCGGCCTT  2439

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2440  TGTTCCTCCATAAATGTGTCCTTTAGTTTCAAACAGATCTTTATAGTTCGTGCTTCATAAGCCAATTCTTATTA  2513

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2514  TTATTTTTGGGGGACTCTTCTTCAAAGAGCTTGCCAATGAAGATTTAAAGACAGAGCAGGAGCTTCTTCCAGGA  2587

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2588  GTTCTGAGCCTTGGTTGTGGACAAAACAATCTTAAGTTGGGCAGCTTTCCTCAACACAAAAAAAAGTTATTAAT  2661

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2662  GGTCATTGAACCATAACTAGGACTTTATCAGAAACTCAAAGCTTGGGGGATAAAAAGGAGCAAGAGAATACTGT  2735

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2736  AACAAACTTCGTACAGAGTTCGGTCTATTAATTGTTTCATGTTAGATATTCTATGTGTTTACCTCAATTGAAAA  2809

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2810  AAAAAAGAATGTTTTTGCTAGTATCAGATCTGCTGTGGAATTGGTATTGTATGTCCATGAATTCTTCTTTTCTC  2883

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2884  AGCACGTGTTCCTCACTAGAAGAAAATGCTGTTACCTTTAAGCTTTGTCAAATTTACATTAAAATACTTGTATG  2957

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2958  AGGACTGTGACGTTATGTTAAAAAAAAAAAGGTGTTAAGTCACAAAAAGCGGTAATAAATATTTCATTTTTGAT  3031

Query 1144  ----  1143
                
Sbjct 3032  TTTT  3035

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