Nucleotide Global Alignment

Description

Query:
ccsbBroad304_01097
Subject:
XR_946659.3
Aligned Length:
4869
Identities:
405
Gaps:
4464

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AATTGGTACCAGGAGAGCCCAGAAGCCACACACGCATCTCTGCCTCTTTGCTCTGGCTCTCCCACCCTCTTCCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTCTTTCTCTGCTTCCTTGTCACTGTTACTCCAGGAGACGTTCACTTTTCACCAACCTTTCTCCAAGCATCTCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGCCACTGACTATATATATTTTGCTACAAGAGACCTAGAAGAGGAAAAAAGGCACGAGACTTTTCAACACATC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTTTAAAAAAATCATCAACGAATTTCTTGCAATGTTTGAGAACAATTAAAAGGAAAAAGCGTTTTTTAAAAAAT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTATCAACTAAGTGAACAATCATTCATATCGTCTACATCCTGAGATATTATTGTCCCTCGCTGCGGACACCAGC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GAGATGACAGCTGCTTTTTCATTTTTGAATGTAATAAATATTTGCTGCTTTTAATATTTTCCGGAATCTCCCCT  444

Query    1  ------------------------------------------------------------------------AT  2
                                                                                    ||
Sbjct  445  CGCTATTCCTTGGAATTTTAACTCTAAAGATTGGAGAACAGATTATCAAAAAGGCTTTTGCAAGCCTCCAAAAT  518

Query    3  GATGCTGAGTCCGGACCAAGCAGCAGATTCGGACCATCCCAGCTCGGCGCACTCGGATCCGGAGTCCCTGGGCG  76
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GATGCTGAGTCCGGACCAAGCAGCAGATTCGGACCATCCCAGCTCGGCGCACTCGGATCCGGAGTCCCTGGGCG  592

Query   77  GCACGGACACCAAGGTGCTCGGCAGCGTGTCGGACCTGGAGCCGGTGGAGGAGGCCGAGGGCGACGGCAAGGGC  150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GCACGGACACCAAGGTGCTCGGCAGCGTGTCGGACCTGGAGCCGGTGGAGGAGGCCGAGGGCGACGGCAAGGGC  666

Query  151  GGCAGCCGAGCCGCGCTCTACCCGCACCCGCAGCAGCTGAGCCGCGAGGAGAAGCGCCGCCGCCGGCGCGCCAC  224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGCAGCCGAGCCGCGCTCTACCCGCACCCGCAGCAGCTGAGCCGCGAGGAGAAGCGCCGCCGCCGGCGCGCCAC  740

Query  225  GGCCAAGTACCGCTCGGCCCACGCCACCCGCGAGCGCATCCGCGTGGAAGCCTTCAACTTGGCCTTCGCCGAGC  298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GGCCAAGTACCGCTCGGCCCACGCCACCCGCGAGCGCATCCGCGTGGAAGCCTTCAACTTGGCCTTCGCCGAGC  814

Query  299  TCCGCAAATTGCTGCCCACGCTGCCCCCGGACAAGAAGCTCTCCAAGATCGAGATCCTGCGCCTGGCCATCTGC  372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCCGCAAATTGCTGCCCACGCTGCCCCCGGACAAGAAGCTCTCCAAGATCGAGATCCTGCGCCTGGCCATCTGC  888

Query  373  TACATCTCCTATCTCAACCACGTCCTGGACGTG-----------------------------------------  405
            |||||||||||||||||||||||||||||||||                                         
Sbjct  889  TACATCTCCTATCTCAACCACGTCCTGGACGTGTAGGGCGGGGTGCGCCGCGGGGGGCCGCCTGTCCCGGCGTC  962

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  963  CGCGAAACGCTACGGATCCGGACGGGCGCCGTCGCTCGGGTGGCGGAGGCTGCGGTGGCCCAGCGAGACGGCCG  1036

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1037  CCTCGAGAGACGGCCGGGGAAGAAGCTCGCTACCTGTTCTCTCTGGTCAGCAGGGCGACGAGGGAAGGTTTCCG  1110

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1111  ACGCAGGCAGGAGAGGATCTTTGCAATGTCATTTCAAATCCAAAGCTGCTGAGCACCCTCCAAGAGAGACAAGC  1184

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1185  ATGGTGGCAGTCTGCTAGACCAGAGGGTGACTGGCTCATTCCCTGAGCACAGCGCAGACACAGTGATTATTCGC  1258

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1259  CCATCCATGAGGTCTCGATTCTTCTTTGAATGACGATGCCACTCAACAACTTGCCAGGCCATTGCTGCTCCCCA  1332

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1333  GAAAGCCTAGCCCCAGCTGGCCCAGCGGACAAGACTGCCTGTGCTGAATATTTCTCCACCCAAATGGACTTCCC  1406

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1407  CTCACTTCTACCACTGCCCGGAAACTTCCAGAGAACAAGGGTAAAAGTATTGGGCAAAACAACCTTCCTCTCCA  1480

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1481  GGGAGAGGGGAAGAGGAGGGGCAGTGTATGATGGGATGGGATGGTAAAGGAAGGGCCGACTGAGGAGAGAGGAA  1554

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1555  TGGGTAAGGAGGAAATGAGACTGGGTGGGAGTGGGGGACTCTGGAGGGAATACCCGCTTCCCACAGGAATGCTG  1628

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1629  TTTGCAGGAGCTCCCTCCAGTGGCCCTGCCCCATGAACACGTATCACCAGAGCACTATGATAAGGCGAGTAGCC  1702

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1703  AGAGCCAGCCTCTGTGATGCTGTGATTTATCCAACTCTCCTCACTGCTGTCTCTGGCTACCAGTTTTCTTGCTG  1776

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1777  ATGTTTGGGGTGGAGAGAATTTAAGGGGAGAAGAGGGCCAACTTAAGAGCATGCACAGCCAATACCCTTTTCCA  1850

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1851  TATTTAGATGTGCTATCTCATTTATCAGTATTAGTAGTCGAAATAATAGCTAATGTGGGTTGAGTGTATACTAC  1924

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1925  ATGCTTACTAAAGTGCTTTGCATGCATTATCTCCTGTAATTCTCACAACCACCCAGTGAGGTAGGTACTTTTAT  1998

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1999  TGTCTCCATTTAACAGATGAGGAATTTGAGGCTTAAAGAAATTAGATGACTTGCTTAGGGCCATGAAGCCATGT  2072

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2073  TTATCAGTTTATCAAAGTGCCTGCCCCTACCCATCATCCTCTAGAGTTGTCCTTTGATAGAGGGGTAGCTGTGC  2146

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2147  CACTCACACACCACCCCCCTTGGTGCCTGCACTGCATCTTTCCATCCATGTGCCTAGGGAAAGCTTCAGCTCAT  2220

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2221  GTAATGCCTAAGGAGTGCTGCGTCTGCAGTACACACAGCTGCCCAACCAATGGGACCAGTGGAGGCCAAAACCA  2294

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2295  AGCCTGTGCTCTGTATGCCAAGTCAAGCATGTGCCTTGGCTTGAAGTTGGACTACCTGGAGGAAGGGGAGCATT  2368

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2369  TTTCTACTTTGCAAGAAAACACTATAGGATAATGGTGGCCCTGTGACAACTCCCCCACCAGGGCACCGTCATTC  2442

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2443  ACTACCACATGGGTGAGGCTGGCTCCATCCACACTCCTCTGCACCTTCCAGCCCATTCTCACGCTGCTTCTAGA  2516

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2517  CCTATCTTTAAAAATTAGCGTGCCATCCTCCTTCGTGAATGTCCATTTTATTTTTTAATAAAATTCAAGTTCCC  2590

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2591  AATCTAGGCATAGAAATGTTTCACAGTCTTGTTCCAGACCCTCACTAGTGCCATTTTCAGCCACTCTCCAGAGA  2664

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2665  TTAAATATTCCTGCAAACTCGGTTTCCTCACTTCCCCAGAGAGGCCAAGTCTTTTTCTTTTACGACCTGGGCCT  2738

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2739  TTGTATTTACTTCCCCTTTACTCACAATGCTCTCCCCTAACCTCATTTTTTACCCAGAAAATTCCGATGATTCC  2812

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2813  ACTGTGACCCAACTCAGACCACACGTAACCACACGTATCATTACAAAGCTTTCCGTTTCTTTCAGAAGCATTAG  2886

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2887  CTGCTCTGTTCTCTGAGTCCCACATACATACATCGTTTTAACTGAATTTACCTGTTTCTCCCATCTCTGTGTTT  2960

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2961  GAGACCCAAGACTCTGGAGCCAAGTTCGGGCCCTGGCTCCAATTATTCTAAGTGTATGACATTGAACATGTTAC  3034

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3035  TATATCTCCTCAAGCCTCCATTTTCATCCATAAGATGGGACAACGTATGTACCAATCTCAAATGCATGTCATGA  3108

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3109  GGTTTCCATGGGATAATGTATAGTGCTTATCAGAATAGGAATACATGGGAAGTGCTCAATAAATGTGAGCTATT  3182

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3183  TTCATTACCTTTGTATTTATAATATGCACAGGAATTAACATAGGATAAGCTAAAATCAGCTTTAATTCTTTAAT  3256

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3257  ATAGTAATGATTTGTGGTTTCCACCAACTATATCCATCTGCATATGATACATTACTAACTCAACAGTCAGCCAG  3330

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3331  AAATCATCCCCATCTTCTAAGACAGGAAGCATAGGTAAATTAATAGTCATCCATGGAATACACCACACATGCAC  3404

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3405  ACCTGTAGAGTTATCTACAGGTCTGAAAGCCCCACTCGACTCATGATAAAGGCCCAGTCTATGCCTTTTCTCTT  3478

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3479  TTACCTTGGTTTTTCCCATAGCACGAATGCTGTGATAAGCACTATAGCAGACTGGTCAGAAGCACAGACTCTGT  3552

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3553  CAAAGCTAATTTTTAAAGATAGGTCTAGAAGCAGAGGGCCAGTTTTCAGGCCTGCTCACCCATGATAGGTCAGG  3626

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3627  CAGAGGGGGATGAGCGGGCACTCACATCCAATGTGTGTGTACGAGCAATTGCCAAAGTTAAGGACGACAAGGGG  3700

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3701  TAAATTTTTTTTTTTTTTTTTGAGACCAAGTCTCGCTCTGTGGCCCAGGCTGCAGTGGTGCAGTGGCGCAATCT  3774

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3775  TGGCTCACTGCAACCTCCACCTCCCAGGTTCAGGCAATTCTTCTGGCTCAGCCTCCCGAGTAGCTGGGATTACA  3848

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3849  GGCATGTACCACCATGCCCAGCTAATTTTTTGTATTTTTTGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTG  3922

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3923  GTCTTGAACTCCTGACCTCAGGTGATCCGCCCCCCCCTAGGCCTTTCAAAGTGCTGGGATTACAGGCGTGAGCC  3996

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3997  ACCGCGCCCAGCCAGACAAGGGGTACATTTTTAAGATAGAAGGAAAAGTCATCAGGGAAGGTGGGTTAGATCAG  4070

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 4071  CTGTGAAAGTCCCCTCAAATATGCAAGTGCTCACAGATGATTTTCAGGAAATACTGTTCGTTTTACTGTGATAA  4144

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 4145  TGGTATATTTGTTGTTAAAAGAAAAAAGAGTCCTTATCTTTTAAGAGATACTTACTGATGTCTTCATGGATGAA  4218

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 4219  ATGATGTGATGTTTGGGATTTGCTTCAAAAAGTCTTAAGGGGTAGTGAGAAAGACAGGATAAGAAAATAAATGA  4292

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 4293  AATGTACTTATTGGTGTTGTGTATATTTGAATCCATTTCACTATTCTCTTGGCTTTTGGAGATGTTTTAACAGT  4366

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 4367  TTTCCATAAGAGCGTTTTTTAAAATGTAGTTGCTCAGAAAATTTGTGCCAGTTGATTTTTACTCACCAGGAAGT  4440

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 4441  CGACTCCCGCTTAAACTAAGGCCACCACCCTCTTTCACAGAGCTCCACCCTTTAGCACAAGTCACCTCATGCCA  4514

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 4515  CTCAGAGAACCATCTCCAGCCCTGGTTACTTTTTGTGAATGCACCAGGTATTGCTCCACAGAGTCATCTCTGGA  4588

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 4589  GAAAGTTTTTTTCTTTGTCTTTGGTCAATGATCCTCTGTCCCTCTTGGCAGACTGACTCCAGTGGCCTTTTATT  4662

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 4663  TTCAGTTATTCCATCCTAACCCCAGGGAATCCTAAGAGGACCCGCCCCCATATACATATCTACCAATCACACCA  4736

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 4737  CCTTTCTCCTGATTCAAGAAGCCCCTGAAATCTTCCCTTTTTCTGATATATTGCTGGAATGATCAGCAAGGAGA  4810

Query  406  -----------------------------------------------------------  405
                                                                       
Sbjct 4811  TGAAGAACTCCCTCCTGACCTGGAAATACTTACTGAAATGAAGCAGGAAATTCCAACAA  4869

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.