Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01113
- Subject:
- NM_001282961.1
- Aligned Length:
- 2474
- Identities:
- 1233
- Gaps:
- 1054
Alignment
Query 1 ATGTCGTCCTGGATAAGGTGGCATGGACCCGCCATGGCGCGGCTCTGGGGCTTCTGCTGGCTGGTTGTGGGCTT 74
||||||.|||||.|.|.||||||||||||||||||||||||||||||||||||.|||..||||||..|||||||
Sbjct 1 ATGTCGCCCTGGCTGAAGTGGCATGGACCCGCCATGGCGCGGCTCTGGGGCTTATGCCTGCTGGTCTTGGGCTT 74
Query 75 CTGGAGGGCCGCTTTCGCCTGTCCCACGTCCTGCAAATGCAGTGCCTCTCGGATCTGGTGCAGCGACCCTTCTC 148
||||||||||.||.|||||||.||.||||||||||||||||||.||.||.||||.|||||.|..||.|||||||
Sbjct 75 CTGGAGGGCCTCTCTCGCCTGCCCGACGTCCTGCAAATGCAGTTCCGCTAGGATTTGGTGTACTGAGCCTTCTC 148
Query 149 CTGGCATCGTGGCATTTCCGAGATTGGAGCCTAACAGTGTAGATCCTGAGAACATCACCGAAATTTTCATCGCA 222
|.||||||||||||||.|||||.|||||.||||||||.||.||.||.|||||||||||.||||||.||||.|||
Sbjct 149 CAGGCATCGTGGCATTCCCGAGGTTGGAACCTAACAGCGTTGACCCGGAGAACATCACGGAAATTCTCATTGCA 222
Query 223 AACCAGAAAAGGTTAGAAATCATCAACGAAGATGATGTTGAAGCTTATGTGGGACTGAGAAATCTGACAATTGT 296
||||||||||||.|||||||||||||.||||||||.|||||||||||.|||||.||||||||.||.||||||||
Sbjct 223 AACCAGAAAAGGCTAGAAATCATCAATGAAGATGACGTTGAAGCTTACGTGGGGCTGAGAAACCTTACAATTGT 296
Query 297 GGATTCTGGATTAAAATTTGTGGCTCATAAAGCATTTCTGAAAAACAGCAACCTGCAGCACATCAATTTTACCC 370
||||||.||.|||||.|||||||||.|.|||||.||||||||||||||||||||||.||||||.|||||.||.|
Sbjct 297 GGATTCCGGCTTAAAGTTTGTGGCTTACAAAGCGTTTCTGAAAAACAGCAACCTGCGGCACATAAATTTCACAC 370
Query 371 GAAACAAACTGACGAGTTTGTCTAGGAAACATTTCCGTCACCTTGACTTGTCTGAACTGATCCTGGTGGGCAAT 444
|||||||.||||||||||||||.||||.|||||||||.|||||||||||||||||.|||||||||..|||.|||
Sbjct 371 GAAACAAGCTGACGAGTTTGTCCAGGAGACATTTCCGCCACCTTGACTTGTCTGACCTGATCCTGACGGGTAAT 444
Query 445 CCATTTACATGCTCCTGTGACATTATGTGGATCAAGACTCTCCAAGAGGCTAAATCCAGTCCAGACACTCAGGA 518
||.||.||.||||||||.|||||.||||||.|||||||||||||.|||.||||||||||.||.|||||||||||
Sbjct 445 CCGTTCACGTGCTCCTGCGACATCATGTGGCTCAAGACTCTCCAGGAGACTAAATCCAGCCCCGACACTCAGGA 518
Query 519 TTTGTACTGCCTGAATGAAAGCAGCAAGAATATTCCCCTGGCAAACCTGCAGATACCCAATTGTGGTTTGCCAT 592
||||||||||||.|||||.|||||||||||.||.||||||||.||||||||||||||||||||||||.||||||
Sbjct 519 TTTGTACTGCCTCAATGAGAGCAGCAAGAACATGCCCCTGGCGAACCTGCAGATACCCAATTGTGGTCTGCCAT 592
Query 593 CTGCAAATCTGGCCGCACCTAACCTCACTGTGGAGGAAGGAAAGTCTATCACATTATCCTGTAGTGTGGCAGGT 666
|||||..||||||.||.|||||||||||.||||||||||||||||||.|.||..|.|||||.|||||||..|||
Sbjct 593 CTGCACGTCTGGCTGCTCCTAACCTCACCGTGGAGGAAGGAAAGTCTGTGACCCTTTCCTGCAGTGTGGGGGGT 666
Query 667 GATCCGGTTCCTAATATGTATTGGGATGTTGGTAACCTGGTTTCCAAACATATGAATGAAACAAGCCACACACA 740
||.||..|.||.|...||||.|||||.|||||.||..||||||||||.||.|||||||||||||||||||||||
Sbjct 667 GACCCACTCCCCACCTTGTACTGGGACGTTGGGAATTTGGTTTCCAAGCACATGAATGAAACAAGCCACACACA 740
Query 741 GGGCTCCTTAAGGATAACTAACATTTCATCCGATGACAGTGGGAAGCAGATCTCTTGTGTGGCGGAAAATCTTG 814
||||||||||||||||||.|||||||||||.|||||||||||.|||||.||||||||||||||.|||||.||||
Sbjct 741 GGGCTCCTTAAGGATAACGAACATTTCATCTGATGACAGTGGAAAGCAAATCTCTTGTGTGGCAGAAAACCTTG 814
Query 815 TAGGAGAAGATCAAGATTCTGTCAACCTCACTGTGCATTTTGCACCAACTATCACATTTCTCGAATCTCCAACC 888
||||||||||||||||||||||.||||||||||||||||||||.|||||||||||.||||||||.|||||||||
Sbjct 815 TAGGAGAAGATCAAGATTCTGTGAACCTCACTGTGCATTTTGCGCCAACTATCACGTTTCTCGAGTCTCCAACC 888
Query 889 TCAGACCACCACTGGTGCATTCCATTCACTGTGAAAGGCAACCCCAAACCAGCGCTTCAGTGGTTCTATAACGG 962
|||||.||||||||||||||||||||||||||||.||||||||||||.||.|||||||||||||||||.||.||
Sbjct 889 TCAGATCACCACTGGTGCATTCCATTCACTGTGAGAGGCAACCCCAAGCCTGCGCTTCAGTGGTTCTACAATGG 962
Query 963 GGCAATATTGAATGAGTCCAAATACATCTGTACTAAAATACATGTTACCAATCACACGGAGTACCACGGCTGCC 1036
|||.|||.|||||||||||||.||||||||||||||.||.||.||.||||||||||||||||||||.|||||||
Sbjct 963 GGCCATACTGAATGAGTCCAAGTACATCTGTACTAAGATCCACGTCACCAATCACACGGAGTACCATGGCTGCC 1036
Query 1037 TCCAGCTGGATAATCCCACTCACATGAACAATGGGGACTACACTCTAATAGCCAAGAATGAGTATGGGAAGGAT 1110
|||||||||||||.||||||||.|||||.||.||.||||||||.||.||.||||||||.|||||||||||||||
Sbjct 1037 TCCAGCTGGATAACCCCACTCATATGAATAACGGAGACTACACCCTGATGGCCAAGAACGAGTATGGGAAGGAT 1110
Query 1111 GAGAAACAGATTTCTGCTCACTTCATGGGCTGGCCTGGAATTGACGATGGTGCAAACCCAAATTATCCTGATGT 1184
||||.||||||.||.|||||||||||||||.||||||||.|.|||.|.|...|||||||||||||.|||||.||
Sbjct 1111 GAGAGACAGATCTCCGCTCACTTCATGGGCCGGCCTGGAGTCGACTACGAGACAAACCCAAATTACCCTGAAGT 1184
Query 1185 AATTTATGAAGATTATGGA--ACTGCAGCGAA-TGACATCGGGGACACCACGAACAGAAGTAATGAAATCCCTT 1255
..|.|||||||| .|||| || ||.|| ||||||.|||||.||.|||||||.|||||||||||||||.|
Sbjct 1185 CCTCTATGAAGA--CTGGACCAC----GCCAACTGACATTGGGGATACTACGAACAAAAGTAATGAAATCCCCT 1252
Query 1256 CCACAGACGTCACTGATAAAACCGGTCGGGAACATCTCTCGGTCTATGCTGTGGTGGTGATTGCGTCTGTGGTG 1329
||||.||.||..||||..|||.|..||||||.|||||||||||||||||.||||||||||||||.|||||||||
Sbjct 1253 CCACGGATGTTGCTGACCAAAGCAATCGGGAGCATCTCTCGGTCTATGCCGTGGTGGTGATTGCATCTGTGGTG 1326
Query 1330 GGATTTTGCCTTTTGGTAATGCTGTTTCTGCTTAAGTTGGCAAGACACTCCAAGTTTGGCATGAAAGGTTTTGT 1403
|||||.|||||..||||.|||.||.|.|||||.||||||||.|||||.||||||||||||||||||||....|.
Sbjct 1327 GGATTCTGCCTGCTGGTGATGTTGCTCCTGCTCAAGTTGGCGAGACATTCCAAGTTTGGCATGAAAGGCCCAGC 1400
Query 1404 TTTGTTTCATAAG----------------------------------ATC-CCACTGGATGGG----------- 1431
||.| .||||.|| ||| ||| |||||
Sbjct 1401 TTCG-GTCATCAGCAACGACGATGACTCTGCCAGCCCCCTCCACCACATCTCCA----ATGGGAGTAACACTCC 1469
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1470 ATCTTCTTCGGAGGGCGGTCCCGACGCTGTCATTATTGGAATGACCAAGATTCCTGTTATTGAAAACCCCCAGT 1543
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1544 ACTTTGGCATCACCAACAGTCAGCTCAAGCCAGACACATTTGTTCAGCATATCAAGAGACACAACATCGTTCTG 1617
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1618 AAGAGGGAACTTGGGGAAGGAGCCTTCGGGAAAGTTTTCCTTGCCGAGTGCTACAACCTCTGCCCAGAGCAGGA 1691
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1692 TAAGATCCTGGTGGCTGTGAAGACGCTGAAGGACGCCAGCGACAATGCACGCAAGGACTTTCATCGGGAAGCTG 1765
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1766 AGCTGCTGACCAACCTCCAGCACGAGCACATTGTCAAGTTCTACGGTGTCTGTGTGGAGGGCGACCCACTCATC 1839
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1840 ATGGTCTTTGAGTACATGAAGCACGGGGACCTCAACAAGTTCCTTAGGGCACACGGGCCCGACGCAGTGCTGAT 1913
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1914 GGCAGAGGGTAACCCGCCCACAGAGCTGACGCAGTCGCAGATGCTGCACATCGCTCAGCAAATCGCAGCAGGTA 1987
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 1988 TGGTCTACCTGGCGTCCCAACACTTTGTGCACCGTGACCTGGCCACCCGGAACTGCCTGGTGGGAGAGAACCTG 2061
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 2062 CTGGTGAAAATTGGGGACTTTGGGATGTCCCGAGATGTGTACAGCACCGACTACTATCGGGTCGGTGGCCACAC 2135
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 2136 AATGTTGCCCATCCGATGGATGCCTCCAGAGAGCATCATGTACAGGAAATTCACCACCGAGAGCGACGTCTGGA 2209
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 2210 GCCTGGGCGTTGTGTTGTGGGAGATCTTCACCTACGGCAAGCAGCCCTGGTATCAGCTATCGAACAATGAGGTG 2283
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 2284 ATAGAGTGCATCACCCAGGGAAGAGTCCTTCAGCGGCCTCGAACGTGTCCCCAGGAGGTGTATGAGCTCATGCT 2357
Query 1432 -------------------------------------------------------------------------- 1431
Sbjct 2358 TGGATGCTGGCAGCGGGAACCACACACCCGGAAGAACATCAAGAGCATCCACACCCTCCTTCAGAACTTGGCCA 2431
Query 1432 -------------------------------- 1431
Sbjct 2432 AGGCATCTCCCGTCTACCTGGATATCCTAGGC 2463
