Nucleotide Global Alignment

Description

• Query: ccsbBroad304_01122
• Subject: NM_001302794.1
• Aligned Length: 1211
• Identities: 863
• Gaps: 232

Alignment

Query    1  ATGGACAGCAGCGCTGCCCCCACGAACGCCAGCAATTGCACTGATGCCTTGGCGTACTCAAGTTGCTCCCCAGC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  ACCCAGCCCCGGTTCCTGGGTCAACTTGTCCCACTTA-GATGGCAACCT--------GTCCGACCCATGCGGTC  139
                                                | ||||| ||.||        |||       |||..||
Sbjct    1  ------------------------------------ATGATGG-AAGCTTTCTCTAAGTC-------TGCATTC  30

Query  140  CGAACCGCACCGACCTGGGCGGGAGAGACAGCCTGTGCCCTCCGACCGGCAGTCCCTCCATGATCACGGCCATC  213
            | ||..||.|.|||         |||||                                 |||   ||..|||
Sbjct   31  C-AAAAGCTCAGAC---------AGAGA---------------------------------GAT---GGAAATC  58

Query  214  ACGATCATGGCCCTCTACTCCATCGTGTGCGTGGTGGGGCTCTTCGGAA-ACTT-CCTGGTCATGTATGTGATT  285
            |.||    ||                                   |||| |.|| ||                 
Sbjct   59  AAGA----GG-----------------------------------GGAAGAGTTACC-----------------  76

Query  286  GTCAGATACACCAAGATGAAGACTGCCACCAACATCTACATTTTCAACCTTGCTCTGGCAGATGCCTTAGCCAC  359
             |||||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   77  -TCAGATATACCAAAATGAAGACTGCCACCAACATCTACATTTTCAACCTTGCTCTGGCAGATGCCTTAGCCAC  149

Query  360  CAGTACCCTGCCCTTCCAGAGTGTGAATTACCTAATGGGAACATGGCCATTTGGAACCATCCTTTGCAAGATAG  433
            .||.||.||||||||.||||||||.||.|||||.||||||||.|||||.|||||||.||||||.||||||||.|
Sbjct  150  TAGCACGCTGCCCTTTCAGAGTGTTAACTACCTGATGGGAACGTGGCCCTTTGGAAACATCCTCTGCAAGATCG  223

Query  434  TGATCTCCATAGATTACTATAACATGTTCACCAGCATATTCACCCTCTGCACCATGAGTGTTGATCGATACATT  507
            |||||||.|||||.|||||.||||||||||||||.||.|||||||||||||||||||||||.||.||.||||||
Sbjct  224  TGATCTCAATAGACTACTACAACATGTTCACCAGTATCTTCACCCTCTGCACCATGAGTGTAGACCGCTACATT  297

Query  508  GCAGTCTGCCACCCTGTCAAGGCCTTAGATTTCCGTACTCCCCGAAATGCCAAAATTATCAATGTCTGCAACTG  581
            ||.|||||||||||.|||||||||.|.|||||||||||.||||||||||||||||||.||||||||||||||||
Sbjct  298  GCCGTCTGCCACCCGGTCAAGGCCCTGGATTTCCGTACCCCCCGAAATGCCAAAATTGTCAATGTCTGCAACTG  371

Query  582  GATCCTCTCTTCAGCCATTGGTCTTCCTGTAATGTTCATGGCTACAACAAAATACAGGCAAGGTTCCATAGATT  655
            ||||||||||||.|||||||||||.||.||||||||||||||.||.||||||||||||||.||.||||||||||
Sbjct  372  GATCCTCTCTTCTGCCATTGGTCTGCCCGTAATGTTCATGGCAACCACAAAATACAGGCAGGGGTCCATAGATT  445

Query  656  GTACACTAACATTCTCTCATCCAACCTGGTACTGGGAAAACCTGCTGAAGATCTGTGTTTTCATCTTCGCCTTC  729
            |.||.||.||.|||||||||||.||.|||||||||||.||||||||.||.||||||||.|||||||||||||||
Sbjct  446  GCACCCTCACGTTCTCTCATCCCACATGGTACTGGGAGAACCTGCTCAAAATCTGTGTCTTCATCTTCGCCTTC  519

Query  730  ATTATGCCAGTGCTCATCATTACCGTGTGCTATGGACTGATGATCTTGCGCCTCAAGAGTGTCCGCATGCTCTC  803
            ||.|||||.||.||||||||.||.|||||.|||||||||||||||||.||.||||||||||||||||||||.||
Sbjct  520  ATCATGCCGGTCCTCATCATCACTGTGTGTTATGGACTGATGATCTTACGACTCAAGAGTGTCCGCATGCTGTC  593

Query  804  TGGCTCCAAAGAAAAGGACAGGAATCTTCGAAGGATCACCAGGATGGTGCTGGTGGTGGTGGCTGTGTTCATCG  877
            .|||||||||||||||||||||||.||.||.|||||||||.||||||||||||||||.||||||||.||.||.|
Sbjct  594  GGGCTCCAAAGAAAAGGACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGGTGGTCGTGGCTGTATTTATTG  667

Query  878  TCTGCTGGACTCCCATTCACATTTACGTCATCATTAAAGCCTTGGTTACAATCCCAGAAACTACGTTCCAGACT  951
            ||||||||||.|||||.|||||.||.||||||||.|||||..||.|.||.||.||||||||.||.|||||||||
Sbjct  668  TCTGCTGGACCCCCATCCACATCTATGTCATCATCAAAGCACTGATCACGATTCCAGAAACCACTTTCCAGACT  741

Query  952  GTTTCTTGGCACTTCTGCATTGCTCTAGGTTACACAAACAGCTGCCTCAACCCAGTCCTTTATGCATTTCTGGA  1025
            |||||.|||||||||||||||||..|.||||||||||||||||||||.||||||||.||||||||.||.|||||
Sbjct  742  GTTTCCTGGCACTTCTGCATTGCCTTGGGTTACACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTCCTGGA  815

Query 1026  TGAAAACTTCAAACGATGCTTCAGAGAGTTCTGTATCCCAACCTCTTCCAACATTGAGCAACAAAACTCCACTC  1099
            ||||||||||||||||||.||.|||||||||||.||||||||.||.||||..||.||.||.||||||||..|||
Sbjct  816  TGAAAACTTCAAACGATGTTTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATCGAACAGCAAAACTCTGCTC  889

Query 1100  GAATTCGTCAGAACACTAGAGACCACCCCTCCACGGCCAATACAGTGGATAGAACTAATCATCAGCTAGAAAAT  1173
            ||||.|||||.||||||||.||.||||||||||||||.||||||||||||.|||||||.||.||||||||||||
Sbjct  890  GAATCCGTCAAAACACTAGGGAACACCCCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGCTAGAAAAT  963

Query 1174  CTGGAAGCAGAAACTGCTCCGTTGCCC  1200
            ||||||||||||||||||||.||||||
Sbjct  964  CTGGAAGCAGAAACTGCTCCATTGCCC  990