Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01122
- Subject:
- NM_001302795.1
- Aligned Length:
- 1343
- Identities:
- 847
- Gaps:
- 376
Alignment
Query 1 ATGGACAGCAGCGCTGCCCCCACGAACGCCAGCAATTGCACTGATGCCTTGGCGTACTCAAGTTGCTCCCCAGC 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 ACCCAGCCCCGGTTCCTGGGTCAACTTGTCCCACTTA-GATGGCAACCT--------GTCCGACCCATGCGGTC 139
| ||||| ||.|| ||| |||..||
Sbjct 1 ------------------------------------ATGATGG-AAGCTTTCTCTAAGTC-------TGCATTC 30
Query 140 CGAACCGCACCGACCTGGGCGGGAGAGACAGCCTGTGCCCTCCGACCGGCAGTCCCTCCATGATCACGGCCATC 213
| ||..||.|.||| ||||| ||| ||..|||
Sbjct 31 C-AAAAGCTCAGAC---------AGAGA---------------------------------GAT---GGAAATC 58
Query 214 ACGATCATGGCCCTCTACTCCATCGTGTGCGTGGTGGGGCTCTTCGGAA-ACTT-CCTGGTCATGTATGTGATT 285
|.|| || |||| |.|| ||
Sbjct 59 AAGA----GG-----------------------------------GGAAGAGTTACC----------------- 76
Query 286 GTCAGATACACCAAGATGAAGACTGCCACCAACATCTACATTTTCAACCTTGCTCTGGCAGATGCCTTAGCCAC 359
|||||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 -TCAGATATACCAAAATGAAGACTGCCACCAACATCTACATTTTCAACCTTGCTCTGGCAGATGCCTTAGCCAC 149
Query 360 CAGTACCCTGCCCTTCCAGAGTGTGAATTACCTAATGGGAACATGGCCATTTGGAACCATCCTTTGCAAGATAG 433
.||.||.||||||||.||||||||.||.|||||.||||||||.|||||.|||||||.||||||.||||||||.|
Sbjct 150 TAGCACGCTGCCCTTTCAGAGTGTTAACTACCTGATGGGAACGTGGCCCTTTGGAAACATCCTCTGCAAGATCG 223
Query 434 TGATCTCCATAGATTACTATAACATGTTCACCAGCATATTCACCCTCTGCACCATGAGTGTTGATCGATACATT 507
|||||||.|||||.|||||.||||||||||||||.||.|||||||||||||||||||||||.||.||.||||||
Sbjct 224 TGATCTCAATAGACTACTACAACATGTTCACCAGTATCTTCACCCTCTGCACCATGAGTGTAGACCGCTACATT 297
Query 508 GCAGTCTGCCACCCTGTCAAGGCCTTAGATTTCCGTACTCCCCGAAATGCCAAAATTATCAATGTCTGCAACTG 581
||.|||||||||||.|||||||||.|.|||||||||||.||||||||||||||||||.||||||||||||||||
Sbjct 298 GCCGTCTGCCACCCGGTCAAGGCCCTGGATTTCCGTACCCCCCGAAATGCCAAAATTGTCAATGTCTGCAACTG 371
Query 582 GATCCTCTCTTCAGCCATTGGTCTTCCTGTAATGTTCATGGCTACAACAAAATACAGGCAAGGTTCCATAGATT 655
||||||||||||.|||||||||||.||.||||||||||||||.||.||||||||||||||.||.||||||||||
Sbjct 372 GATCCTCTCTTCTGCCATTGGTCTGCCCGTAATGTTCATGGCAACCACAAAATACAGGCAGGGGTCCATAGATT 445
Query 656 GTACACTAACATTCTCTCATCCAACCTGGTACTGGGAAAACCTGCTGAAGATCTGTGTTTTCATCTTCGCCTTC 729
|.||.||.||.|||||||||||.||.|||||||||||.||||||||.||.||||||||.|||||||||||||||
Sbjct 446 GCACCCTCACGTTCTCTCATCCCACATGGTACTGGGAGAACCTGCTCAAAATCTGTGTCTTCATCTTCGCCTTC 519
Query 730 ATTATGCCAGTGCTCATCATTACCGTGTGCTATGGACTGATGATCTTGCGCCTCAAGAGTGTCCGCATGCTCTC 803
||.|||||.||.||||||||.||.|||||.|||||||||||||||||.||.||||||||||||||||||||.||
Sbjct 520 ATCATGCCGGTCCTCATCATCACTGTGTGTTATGGACTGATGATCTTACGACTCAAGAGTGTCCGCATGCTGTC 593
Query 804 TGGCTCCAAAGAAAAGGACAGGAATCTTCGAAGGATCACCAGGATGGTGCTGGTGGTGGTGGCTGTGTTCATCG 877
.|||||||||||||||||||||||.||.||.|||||||||.||||||||||||||||.||||||||.||.||.|
Sbjct 594 GGGCTCCAAAGAAAAGGACAGGAACCTGCGCAGGATCACCCGGATGGTGCTGGTGGTCGTGGCTGTATTTATTG 667
Query 878 TCTGCTGGACTCCCATTCACATTTACGTCATCATTAAAGCCTTGGTTACAATCCCAGAAACTACGTTCCAGACT 951
||||||||||.|||||.|||||.||.||||||||.|||||..||.|.||.||.||||||||.||.|||||||||
Sbjct 668 TCTGCTGGACCCCCATCCACATCTATGTCATCATCAAAGCACTGATCACGATTCCAGAAACCACTTTCCAGACT 741
Query 952 GTTTCTTGGCACTTCTGCATTGCTCTAGGTTACACAAACAGCTGCCTCAACCCAGTCCTTTATGCATTTCTGGA 1025
|||||.|||||||||||||||||..|.||||||||||||||||||||.||||||||.||||||||.||.|||||
Sbjct 742 GTTTCCTGGCACTTCTGCATTGCCTTGGGTTACACAAACAGCTGCCTGAACCCAGTTCTTTATGCGTTCCTGGA 815
Query 1026 TGAAAACTTCAAACGATGCTTCAGAGAGTTCTGTATCCCAACCTCTTCCAACATTGAGCAACAAAACTCCACTC 1099
||||||||||||||||||.||.|||||||||||.||||||||.||.||||..||.||.||.||||||||..|||
Sbjct 816 TGAAAACTTCAAACGATGTTTTAGAGAGTTCTGCATCCCAACTTCCTCCACAATCGAACAGCAAAACTCTGCTC 889
Query 1100 GAATTCGTCAGAACACTAGAGACCACCCCTCCACGGCCAATACAGTGGATAGAACTAATCATCAGCTAGAAAAT 1173
||||.|||||.||||||||.||.||||||||||||||.||||||||||||.|||||||.||.|||| .||..
Sbjct 890 GAATCCGTCAAAACACTAGGGAACACCCCTCCACGGCTAATACAGTGGATCGAACTAACCACCAGC---CAACC 960
Query 1174 CTGGAAG-CAGAAACTGCTCCGTTGCCC---------------------------------------------- 1200
||||.|| ||| |||.||||
Sbjct 961 CTGGCAGTCAG---------CGTGGCCCAGATCTTTACAGGATATCCTTCTCCGACTCATGTTGAAAAACCCTG 1025
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1026 CAAGAGTTGCATGGACAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAATCCGGGGAAGGCC 1099
Query 1201 ----------- 1200
Sbjct 1100 AGCTTGGCAGG 1110