Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01122
- Subject:
- NR_104351.1
- Aligned Length:
- 2679
- Identities:
- 1191
- Gaps:
- 1480
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCAGGACTGGTTTCTGTAAGAAACAGCAGGAGCTGTGGCAGCGGCGAAAGGAAGCGGCTGAGGCGCTTGGAACC 74
Query 1 ------------------------------------------------------------ATGGACAGCAGCGC 14
||||||||||||||
Sbjct 75 CGAAAAGTCTCGGTGCTCCTGGCTACCTCGCACAGCGGTGCCCGCCCGGCCGTCAGTACCATGGACAGCAGCGC 148
Query 15 TGCCCCCACGAACGCCAGCAATTGCACTGATGCCTTGGCGTACTCAAGTTGCTCCCCAGCACCCAGCCCCGGTT 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TGCCCCCACGAACGCCAGCAATTGCACTGATGCCTTGGCGTACTCAAGTTGCTCCCCAGCACCCAGCCCCGGTT 222
Query 89 CCTGGGTCAACTTGTCCCACTTAGATGGCAACCTGTCCGACCCATGCGGTCCGAACCGCACCGACCTGGGCGGG 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCTGGGTCAACTTGTCCCACTTAGATGGCAACCTGTCCGACCCATGCGGTCCGAACCGCACCGACCTGGGCGGG 296
Query 163 AGAGACAGCCTGTGCCCTCCGACCGGCAGTCCCTCCATGATCACGGCCATCACGATCATGGCCCTCTACTCCAT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGAGACAGCCTGTGCCCTCCGACCGGCAGTCCCTCCATGATCACGGCCATCACGATCATGGCCCTCTACTCCAT 370
Query 237 CGTGTGCGTGGTGGGGCTCTTCGGAAACTTCCTGGTCATGTATGTGATTGTCAGATACACCAAGATGAAGACTG 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CGTGTGCGTGGTGGGGCTCTTCGGAAACTTCCTGGTCATGTATGTGATTGTCAGATACACCAAGATGAAGACTG 444
Query 311 CCACCAACATCTACATTTTCAACCTTGCTCTGGCAGATGCCTTAGCCACCAGTACCCTGCCCTTCCAGAGTGTG 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCACCAACATCTACATTTTCAACCTTGCTCTGGCAGATGCCTTAGCCACCAGTACCCTGCCCTTCCAGAGTGTG 518
Query 385 AATTACCTAATGGGAACATGGCCATTTGGAACCATCCTTTGCAAGATAGTGATCTCCATAGATTACTATAACAT 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AATTACCTAATGGGAACATGGCCATTTGGAACCATCCTTTGCAAGATAGTGATCTCCATAGATTACTATAACAT 592
Query 459 GTTCACCAGCATATTCACCCTCTGCACCATGAGTGTTGATCGATACATTGCAGTCTGCCACCCTGTCAAGGCCT 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTTCACCAGCATATTCACCCTCTGCACCATGAGTGTTGATCGATACATTGCAGTCTGCCACCCTGTCAAGGCCT 666
Query 533 TAGATTTCCGTACTCCCCGAAATGCCAAAATTATCAATGTCTGCAACTGGATCCTCTCTTCAGCCATTGGTCTT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TAGATTTCCGTACTCCCCGAAATGCCAAAATTATCAATGTCTGCAACTGGATCCTCTCTTCAGCCATTGGTCTT 740
Query 607 CCTGTAATGTTCATGGCTACAACAAAATACAGGCAAGGTTCCATAGATTGTACACTAACATTCTCTCATCCAAC 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CCTGTAATGTTCATGGCTACAACAAAATACAGGCAAGGTTCCATAGATTGTACACTAACATTCTCTCATCCAAC 814
Query 681 CTGGTACTGGGAAAACCTGCTGAAGATCTGTGTTTTCATCTTCGCCTTCATTATGCCAGTGCTCATCATTACCG 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTGGTACTGGGAAAACCTGCTGAAGATCTGTGTTTTCATCTTCGCCTTCATTATGCCAGTGCTCATCATTACCG 888
Query 755 TGTGCTATGGACTGATGATCTTGCGCCTCAAGAGTGTCCGCATGCTCTCTGGCTCCAAAGAAAAGGACAGGAAT 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TGTGCTATGGACTGATGATCTTGCGCCTCAAGAGTGTCCGCATGCTCTCTGGCTCCAAAGAAAAGGACAGGAAT 962
Query 829 CTTCGAAGGATCACCAGGATGGTGCTGGTGGTGGTGGCTGTGTTCATCGTCTGCTGGACTCCCATTCACATTTA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTTCGAAGGATCACCAGGATGGTGCTGGTGGTGGTGGCTGTGTTCATCGTCTGCTGGACTCCCATTCACATTTA 1036
Query 903 CGTCATCATTAAAGCCTTGGTTACAATCCCAGAAACTACGTTCCAGACTGTTTCTTGGCACTTCTGCATTGCTC 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CGTCATCATTAAAGCCTTGGTTACAATCCCAGAAACTACGTTCCAGACTGTTTCTTGGCACTTCTGCATTGCTC 1110
Query 977 TAGGTTACACAAACAGCTGCCTCAACCCAGTCCTTTATGCATTTCTGGATGAAAACTTCAAACGATGCTTCAGA 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TAGGTTACACAAACAGCTGCCTCAACCCAGTCCTTTATGCATTTCTGGATGAAAACTTCAAACGATGCTTCAGA 1184
Query 1051 GAGTTCTGTATCCCAACCTCTTCCAACATTGAGCAACAAAACTCCACTCGAATTCGTCAGAACACTAGAGACCA 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GAGTTCTGTATCCCAACCTCTTCCAACATTGAGCAACAAAACTCCACTCGAATTCGTCAGAACACTAGAGACCA 1258
Query 1125 CCCCTCCACGGCCAATACAGTGGATAGAACTAATCATCAGCT-AGA-----------AAA-------------T 1173
||||||||||||||||||||||||||||||||||||||||.| ||| ||| |
Sbjct 1259 CCCCTCCACGGCCAATACAGTGGATAGAACTAATCATCAGATCAGAGATCCAATATCAAACCTTCCCAGGGTGT 1332
Query 1174 CTGGAAGCAGA-AACTGCTCCGTTG--------CCC-------------------------------------- 1200
|||.|..|.|| ||||| |||..|| .||
Sbjct 1333 CTGTATTCTGACAACTG-TCCACTGAGGCAATTTCCATACAGCGCAAAGTGGAGTGGCGATTTGGCAGTTATCA 1405
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1406 AGGGACCTCCAGCCAAGTTTGTTGCTGACCAACTTGCCGGGTCGTCTTGAAAAGGGGGCTTACAGGTGTTCCAA 1479
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1480 GCCCGTGTTTTATCCTGAAGTATCCCTCAACACAGAAAAACGACCTCATAACACAAAATACACCAGCTTAAAAA 1553
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1554 TAGCCTTTGAATTATTTTTCACATTAATCAAAACTTTACAGAGGAGATAAACACTGATTTTTTTATTTTATTTT 1627
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1628 ATTTTATTTTATTTTATTTTATTGCCATTCATTCAACCGTTTGCACAGAGAGAAAGAAGACAGAAATCTGACTG 1701
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1702 GTAAGAAATTGTTACCCTTTTGCCAGCATGCCAGGCTTCTGGGTTCCCTTTCCCTGAGCGGCCCTAGTGATCCG 1775
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1776 GCTTGCGGCACCATCGCCTACGGGCCAAGCTGCATCATAAAGGAAATTTTTTTTTTTCATTCTGGCCAGAGCAA 1849
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1850 AACACATGTGATAAAACATAGGCATTAGCTACTCTGCTTAGCACCAAATATCAGACTAGCTTAAATTTGCCCCC 1923
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1924 AGATGGGTTCCATCATCTTTAATCCGACCTCTGACTTGCAGTTTCAACACGTGCTCTCTGGGCAAAACAGTTGC 1997
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1998 CCTGAGTAACAGAAAAGATAGGAAAGGAAAAGGAGAGAGAGAAAAACGTGCCAGTGGAAGGGTGGGGAAGGTGA 2071
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 2072 AATGATCAAGGAGGCCAGAGAAAGACTCACCTATTGCAGCAACACTGTAGAAGTTCAGGCAGCTGCTTCTCGGT 2145
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 2146 AGCAAAAGGATCTTTTCCAGCAATCCTATTAGCTCTCAAGTTTCCCCTTTTAGGGAGGAAAAAGCTCCCCATGT 2219
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 2220 CCCGCGATCCTGTACATGTCCAACCCTGCCATCCACAGCCATCAGCAAAGAGTGCAAGACAGATTAATCCAAAG 2293
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 2294 AGAATAGCAATTAATATCCCATAGCATCAAAGCTGTTCTTAGCCAAGAGGGACTTTAACGAGAGGGGTCTCTAA 2367
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 2368 CACCCTAAATCTTAGAAGAGACTCTAACCATCCTAAGTAGGGCCTCTAACCCCGCTTTATAAACTTTTAATTGA 2441
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 2442 CTCCCATCTTAACAGTTGCAATCCATGGAGGAATGCTTGATAACCTCGGTGATAAGATAAAAAACCAAGCATAC 2515
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 2516 TAGAAGTGTTCTCTAAAATTAAAAATACAGTAGTTACTAGAGAAAAATTTTAGTCCAAAAATCCAACTATAGAA 2589
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 2590 ACATAGAATGTGAGAGGTAGCACATAAGAAATAAGTCATGGGGATTTTATTTCATGGACCAGCAATATGATGAT 2663
Query 1201 --------------- 1200
Sbjct 2664 AAAAGCCATCTAACC 2678
