Nucleotide Global Alignment

Description

• Query: ccsbBroad304_01142
• Subject: NR_110269.2
• Aligned Length: 1061
• Identities: 593
• Gaps: 421

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGAGGAGCTGCTGCTGGTGCTGGGGCCGGAGGAGGGACGCGCCGGAGCGGGACCGACGGGACCGAGCGAGCGAC  74

Query    1  -----------------------------------------------------------------ATGAGCCAA  9
                                                                             |||||||||
Sbjct   75  CGACGCGCCACCCGCCGACGCCTCAGCCGCTTGGGGCCCGCACGGACCCTCTACTTCAGTGTAGAATGAGCCAA  148

Query   10  GGAGACTCAAACCCAGCAGCTATTCCGCATGCAGCAGAAGATATTCAAGGAGATGACCGATGGATGTCTCAGCA  83
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GGAGACTCAAACCCAGCAGCTATTCCGCATGCAGCAGAAGATATTCAAGGAGATGACCGATGGATGTCTCAGCA  222

Query   84  CAACAGATTTGTTTTGGACTGTAAAGACAAAGAGCCTGATGTACTGTTCGTGGGAGACTCCATGGTGCAGTTAA  157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CAACAGATTTGTTTTGGACTGTAAAGACAAAGAGCCTGATGTACTGTTCGTGGGAGACTCCATGGTGCAGTTAA  296

Query  158  TGCAGCAATATGAGATATGGCGAGAGCTTTTTTCCCCACTTCATGCACTGAATTTTGGAATTGGGGGAGATACA  231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGCAGCAATATGAGATATGGCGAGAGCTTTTTTCCCCACTTCATGCACTGAATTTTGGAATTGGGGGAGATACA  370

Query  232  ACAAGACATGTTTTGTGGAGACTAAAGAATGGAGAACTGGAGAATATTAAGCCTAAGGTCATTGTTGTCTGGGT  305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ACAAGACATGTTTTGTGGAGACTAAAGAATGGAGAACTGGAGAATATTAAGCCTAAGGTCATTGTTGTCTGGGT  444

Query  306  AGGAACAAATAACCACGAAAATACAGCAGAAGAAGTAGCAGGTGGGATCGAGGCCATTGTACAACTTATCAACA  379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AGGAACAAATAACCACGAAAATACAGCAGAAGAAGTAGCAGGTGGGATCGAGGCCATTGTACAACTTATCAACA  518

Query  380  CAAGGCAGCCACAGGCCAAAATCATTGTATTGGGT------------------TTGT-TACCTC-GAG---GTG  430
            |||||||||||||||||||||||||||||||||||                  |..| ||.||| |||   |||
Sbjct  519  CAAGGCAGCCACAGGCCAAAATCATTGTATTGGGTAAAGCAGCCGCCTCCAAATACTCTATCTCAGAGATAGTG  592

Query  431  AGA----AAC---------------------------CCAATCCT-TTGA------------------------  448
            |||    |||                           ||.||||| .|||                        
Sbjct  593  AGACTAGAACAAGGGTCGGTTAACTGGTCGATCGGGACCTATCCTGATGACACACCAGCAACTACCAGGCCAGC  666

Query  449  -------------------GGCA--------------------AAAG-AACGCCAAGGTGAAC----CAACTCC  478
                               ||||                    |||| ||.|.|.||.||.||    .||.|||
Sbjct  667  AATATTACAATTATTTACTGGCAAGATGAGCAGGATTACCATGAAAGAAAAGTCCAGATGGACTGAGGAAATCC  740

Query  479  T-CAAGGTTTCGCTGCCGAAGCTTGCCA----ACGTGCA------GCTCCTG-----GATACC-----------  525
            | ||..|.|||    .|.||.||||.||    || ||||      ||||.||     ||.|||           
Sbjct  741  TACACTGATTC----TCCAAACTTGGCAGCTGAC-TGCATGGAGGGCTCATGATGAAGAAACCTCTTTTGCCAT  809

Query  526  ---GACGGGGGTTT----------------------TGTGC----------ACTCGGAC---GGTGCCA-----  556
               ||    ||.||                      |||||          ||| ||||   |||||.|     
Sbjct  810  CCTGA----GGATTCTCTGATTCATATTCGCCTAGATGTGCTGGAAACAGTACT-GGACCAAGGTGCAAACTTG  878

Query  557  --TCTCCTG----------CCACGACATGTTTGATTTTCTGCATCTGACAGGAGGGGGCTATGCAAAGATCTGC  618
              |||..||          ||| ||..||   ||.||.|||.|||..|        ||.|||  ||||.|||..
Sbjct  879  AGTCTAGTGAGGATAGAGTCCA-GAAGTG---GAATTACTGGATCAAA--------GGGTAT--AAAGCTCTCT  938

Query  619  AAACCCCTGCATGAACTGATCATGCAGT---------TGTTGGAGGAAA-----CAC---------CTGAGG--  667
            ||   ..|.|.||||        .||||         |.|||.||.|||     |||         ||||.|  
Sbjct  939  AA---GTTTCTTGAA--------ACAGTGCCAAAATATTTTGTAGAAAAGTTTTCACCAATTTACACTGAAGGT  1001

Query  668  -AGAA----ACAAACCACCATTGCC  687
             ||.|    .|||            
Sbjct 1002  CAGTATCTTTCAA------------  1014