Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01287
- Subject:
- NR_136583.2
- Aligned Length:
- 5820
- Identities:
- 1253
- Gaps:
- 4549
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTACTCAGCCGAGCGGCCGAGGCCGGACGACGCGGCTTGGATTGCGGAGCCGCGAGCAGCGCTGGGTAACGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCGGCGACCACCCCGGACGGCCCCTGTCCCCGCTGGCGGGCTTCCCTGTCGCCGTTCGCTGCGCTGCCGGCTT 148
Query 1 ----------------------------------------------ATGAGCAGAAGCAAGCGTGACAACAATT 28
||||||||||||||||||||||||||||
Sbjct 149 CTTGGTGAATTTTTGGATGAAGCCATTAAATTAATTGCTTGCCATCATGAGCAGAAGCAAGCGTGACAACAATT 222
Query 29 TTTATAGTGTAGAGATTGGAGATTCTACATTCACAGTCCTGAAACGATATCAGAATTTAAAACCTATAGGCTCA 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TTTATAGTGTAGAGATTGGAGATTCTACATTCACAGTCCTGAAACGATATCAGAATTTAAAACCTATAGGCTCA 296
Query 103 GGAGCTCAAGGAATAGTATGCGCAGCTTATGATGCCATTCTTGAAAGAAATGTTGCAATCAAGAAGCTAAGCCG 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGAGCTCAAGGAATAGTATGCGCAGCTTATGATGCCATTCTTGAAAGAAATGTTGCAATCAAGAAGCTAAGCCG 370
Query 177 ACCATTTCAGAATCAGACTCATGCCAAGCGGGCCTACAGAGAGCTAGTTCTTATGAAATGTGTTAATCACAAAA 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACCATTTCAGAATCAGACTCATGCCAAGCGGGCCTACAGAGAGCTAGTTCTTATGAAATGTGTTAATCACAAAA 444
Query 251 ATATAATTGGCCTTTTGAATGTTTTCACACCACAGAAATCCCTAGAAGAATTTCAAGATGTTTACATAGTCATG 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATATAATTGGCCTTTTGAATGTTTTCACACCACAGAAATCCCTAGAAGAATTTCAAGATGTTTACATAGTCATG 518
Query 325 GAGCTCATGGATGCAAATCTTTGCCAAGTGATTCAGATGGAGCTAGATCATGAAAGAATGTCCTACCTTCTCTA 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GAGCTCATGGATGCAAATCTTTGCCAAGTGATTCAGATGGAGCTAGATCATGAAAGAATGTCCTACCTTCTCTA 592
Query 399 TCAGATGCTGTGTGGAATCAAGCACCTTCATTCTGCTGGAATTATTCATCGGGACTTAAAGCCCAGTAATATAG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCAGATGCTGTGTGGAATCAAGCACCTTCATTCTGCTGGAATTATTCATCGGGACTTAAAGCCCAGTAATATAG 666
Query 473 TAGTAAAATCTGATTGCACTTTGAAGATTCTTGACTTCGGTCTGGCCAGGACTGCAGGAACGAGTTTTATGATG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TAGTAAAATCTGATTGCACTTTGAAGATTCTTGACTTCGGTCTGGCCAGGACTGCAGGAACGAGTTTTATGATG 740
Query 547 ACGCCTTATGTAGTGACTCGCTACTACAGAGCACCCGAGGTCATCCTTGGCATGGGCTACAAGGAAAACGTTGA 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 741 ACGCCTTATGTAGTGACTCGCTACTACAGAGCACCCGAGGTCATCCTTGGCATGGGCTACAAGGAAAACGTGGA 814
Query 621 CATTTGGTCAGTTGGGTGCATCATGGGAGAAATGAT------CAAAGGTGGTGTTTTGTTCCCAGGTACAGATC 688
..|.|||||.||.||||||||.||||||||||||.| |||| .|..|.||.|||||.|..||..
Sbjct 815 TTTATGGTCTGTGGGGTGCATTATGGGAGAAATGGTTTGCCACAAA------ATCCTCTTTCCAGGAAGGGACT 882
Query 689 ATATTGATCAGTGGAATAAAGTTATTGAACAGCTTGGAACACCATGTCCTGAATTCATGAAGAAACTGCAACCA 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 ATATTGATCAGTGGAATAAAGTTATTGAACAGCTTGGAACACCATGTCCTGAATTCATGAAGAAACTGCAACCA 956
Query 763 ACAGTAAGGACTTACGTTGAAAACAGACCTAAATATGCTGGATATAGCTTTGAGAAACTCTTCCCTGATGTCCT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ACAGTAAGGACTTACGTTGAAAACAGACCTAAATATGCTGGATATAGCTTTGAGAAACTCTTCCCTGATGTCCT 1030
Query 837 TTTCCCAGCTGACTCAGAACACAACAAACTTAAAGCCAGTCAGGCAAGGGATTTGTTATCCAAAATGCTGGTAA 910
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1031 TTTCCCAGCTGACTCAGAACACAACAAACTTAA----AGTCAGGCAAGGGATTTGTTATCCAAAATGCTGGTAA 1100
Query 911 TAGATGCATCTAAAAGGATCTCTGTAGATGAAGCTCTCCAACACCCGTACATCAATGTCTGGTATGATCCTTCT 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 TAGATGCATCTAAAAGGATCTCTGTAGATGAAGCTCTCCAACACCCGTACATCAATGTCTGGTATGATCCTTCT 1174
Query 985 GAAGCAGAAGCTCCACCACCAAAGATCCCTGACAAGCAGTTAGATGAAAGGGAACACACAATAGAAGAGTGGAA 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 GAAGCAGAAGCTCCACCACCAAAGATCCCTGACAAGCAGTTAGATGAAAGGGAACACACAATAGAAGAGTGGAA 1248
Query 1059 AGAATTGATATATAAGGAAGTTATGGACTTGGAGGAGAGAACCAAGAATGGAGTTATACGGGGGCAGCCCTCTC 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 AGAATTGATATATAAGGAAGTTATGGACTTGGAGGAGAGAACCAAGAATGGAGTTATACGGGGGCAGCCCTCTC 1322
Query 1133 CTTT-----AGGTGCAGCAGTGATCAATGGCTCTCAGCATCCATCATCATCGTCGTCTGTCAATGATGTGTCTT 1201
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 CTTTAGCACAGGTGCAGCAGTGATCAATGGCTCTCAGCATCCATCATCATCGTCGTCTGTCAATGATGTGTCTT 1396
Query 1202 CAATGTCAACAGATCCGACTTTGGCCTCTGATACAGACAGCAGTCTAGAAGCAGCAGCTGGGCCTCTGGGCTGC 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 CAATGTCAACAGATCCGACTTTGGCCTCTGATACAGACAGCAGTCTAGAAGCAGCAGCTGGGCCTCTGGGCTGC 1470
Query 1276 TGTAGA-------------------------------------------------------------------- 1281
||||||
Sbjct 1471 TGTAGATGACTACTTGGGCCATCGGGGGGTGGGAGGGATGGGGAGTCGGTTAGTCATTGATAGAACTACTTTGA 1544
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1545 AAACAATTCAGTGGTCTTATTTTTGGGTGATTTTTCAAAAAATGTAGAATTCATTTTGTAGTAAAGTAGTTTAT 1618
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1619 TTTTTTTAATTTCAAGTGATGTAATTTAAAACCTAAGTTGTGTTTCAAAACAGCAACAAAACTGTATTGTATTT 1692
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1693 TTTTTGCTGTAATTAACTGTATAATGTAAACCTAATTATTTTATCATGGTTTAAATTTTTTGCATATTTGCTTT 1766
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1767 ATCTTATGCTGCTGATTTTTTTAACTGAATTTGTAAGATTTTGTTTATCAAAGCAACTATTATGTGGTGACTTG 1840
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1841 CCTATATCATGAATTATTTAAGATTTTTATAGTTTTTTTTAATTAGAATTTATTTCAGATGTTTTGTTCATGAT 1914
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1915 ACTATCCTTCAGGGTTATGTGCTTATCAATGAAATAACCCCAGAGGAGTGAGGGAAAATAACTTGTAGCCAGTT 1988
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 1989 ATATTCAGGAATAACTACTGTAAATGATGAACGTGTTAGGAGACCTCCAATATTTGCTACTTGCCAATCCTAAT 2062
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2063 TTAGTTACAAGAATTGGTAGGCAATCCTACTTAATTTTGGCAAAAGCCCCGTCATCTAAATGGCAGAATAACTC 2136
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2137 AGAGCATGTCTTTGAAGATGCTGGGCGTCTACCACCACCTTATGTCCCCACCCTACCCAACAAAAATAAGTAAA 2210
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2211 AAGAATATGGTGTATTCTACAAATTTGTGGCATGCTCAAAGTTTATGATCACATAAAGGCAAGAGGATACTTCA 2284
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2285 TGAATAATACATTTCAATGCAAATAAACAGATGGTTCACTTCTACTAGCTATGAGCCTGTTTTTGTATACACTG 2358
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2359 AGTTAATCTACTCAGGCTGTAGGTCCCAGCAATGTTCTAGAGTCTGGTCTTTCCCTTTCCTGCAGCTTCGGGTC 2432
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2433 CTTGGACCTTTCCTGTTTCCTATTACTTGGAGTGTCTGTCAGTTGAGCACCAGTTGTTCTGGTGTTTCATTTGA 2506
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2507 TTCTACTTGTAGCATAATCATTTATACGAGCTATTGGGAGGTTCCAAACCCTACCTAGATTTGTGTAGGTGATG 2580
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2581 TATCAAATGAGCAATATACCGTTCATCTGAAAATAGTAGCACACAGCCATATATAGGATATCATTTTCTAAGGA 2654
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2655 CTGTTTCTTCACATTGAGCAGAGCAGGCATAAATGGTGGTTATTTAGTCTAAGTCTTTTATTTTTTTATACCTG 2728
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2729 ATTTTCAACATAACACGCAATGTGGATGTCGAGTAGTGTTAAGAATGGTGCTGCTCCTGACAAGTGTATGTTAA 2802
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2803 CTGTTTACATTTTCTATCTGTAGAATTATTTCTCTATTACTGAACTTTTCCTAAGTAAAATGTCTTTGAAGTCT 2876
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2877 CGTTATTTCTGAAATACGTTGTCTGTAATAGACCCAGGCACCTTTTAAATTATCTCTGGAACAAGAGGGATTTC 2950
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 2951 ATGTAATGAACTAGGAAATGCATACTCACATAAGCAACAAGGTTCTAGGCAGAAAGCCCCTTGGAATTTGTGAC 3024
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3025 CAACAGGAGCAAGAACAGGTGCGGCTCAACATGCAATGTCTGAAAATTTGCTTGGCATTTTATTCATATATTTA 3098
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3099 GTGCAAAATTATTTTTGAGTGAGATATTTTACATCACTGTTAATGTGCAATATTTAAGATTAAAATACATTAGC 3172
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3173 TTTTTTATATACTTTGAAGTAGCAAGTTTGTTTTCGATGGCTTAGAGTCATGATTTCCAGCTTCCCAGCCTTTT 3246
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3247 TATCAGTCCCTTTTCTAATACAACAAGGTGCATTAATTTGATTAGGCAAATTAGAGTTCTAAGACACTTCTTGA 3320
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3321 ATTGTAGACAGAAAATATTGGATTCACAATTTCAGCAGAAATTTGAGAATGAGTGTGTTTATATTAATTTCACA 3394
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3395 ATTAGCTGTATTTTCTGTAGCATAGATTATGTCACTGTTGCACTTTCACAGCAGACATGCTTTCAGAAGGTTCT 3468
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3469 CATATTTTATGTTTGATTGCTGATAAGCCATCTCTATTGATACAGATTTTGGTTAAGTAAGGAAAACCAGGTGT 3542
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3543 GTGTCTGTATCATTTATTGTAAATGCCAGCTGCCACTTGCCAACCATCATGTTCAGTTCAATTCAAAGAAAACA 3616
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3617 AACTCTCATTACTTAGTGTAAACTAAAATACTTAACAAATTATATCCTAAAAACAAGGTCTCTTTGTTAAATGT 3690
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3691 TGCATGCCCTAGGTTTTAAATTACTACATCCAAATACAGTTTTCGTCTTAAATTTGTTAAGCTAAATATATGTT 3764
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3765 GGTTCTTTTTATTTTGGAATCCTTTAAGCATCTTAAACATTTTTTTTTTGAAGAGAAGTTACAAATAACATTTC 3838
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3839 TATCAGGTAGTACTTGTATGAAACCACCTTTCTTATTCTATAATTTTGATTTTTCAATTTTATATACTTAATAT 3912
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3913 ACTCACTGTCTTACTATCAGAAAGTTATTTTGACCAAGATTTTTATTATCTTCATAGATTCAGAAAGAGATGCT 3986
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 3987 AATTCTGTACCAATGTCTTCCTGGTTACTATTCTCTTCCCTCTAATATATACTGGCCATTTGTAAAACCATTGT 4060
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 4061 GTTGTTGGGATCACTTAGTTATACTATACGCAGATAGAGCATCTCAACTCTGTCATAGTGTTTGCTGAACAGTT 4134
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 4135 TTCAGTGTCATGCACCTTTGGCTGCTAATTGTTCCTGACGTGCACTCTTCCGAGTTGGTAAAGGCACAGTGTGT 4208
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 4209 TCATGCCAGACTTCTAAGAGAAACACCAGCCTCTTAAATCAGAAGCCTACACACAACCCCCTTAACAATCCAAA 4282
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 4283 GAAGCTTGATGGTGTGCAAAGAAGCATCCTGCCAGCCTTGTCATTGTTCTGTTCTATGCTAATCCTGCTGTGTT 4356
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 4357 GTCTAAAAGATGGAGGGAAGAGGACATCAGTGTCTGATAGTGAAATCATCAGCAGGAAAGTGAAGCTCTTTCCT 4430
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 4431 TGGTTACAGATAAGACTTGGTTTACACTATTGGCCAGTATCTGCTAAACATATGAAGACTTAACTATTCAGTGT 4504
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 4505 TGCCTAGGCATTCGCCTGCACAACATTTTGAGGTTAGAACATAGAATATTTTCAGAAATACTGTTGTAGTTTGT 4578
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 4579 GAGTGTTGTTCATTAGTTACACATTAGCTATAGAGTGGATGCATGAAGCCCCATGACACCAGTAAACTTCTCTT 4652
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 4653 ACCAGTAGGTAAACCAAACACCATTCTGTCATTAGCAGCCCTCTTAAATGTTGCCTCTCCGTATCCTGTTGCAT 4726
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 4727 TTTTGTGTGCATTGTGTTTCTACTGATCTCTCTTAGGTTTTTACGGAATCAAAGGAAACTAATTTTTCCTTAAT 4800
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 4801 AGCAAGAAAGATGAAGAGGTAAAGGGCATTGAAGCAGAAATGTATAGTTTGGGGTACGATTAGAAAACTCGTAA 4874
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 4875 GGAAAACAGAAGTCCTAATTTCAAACTGACTGCTCTTCGTTAAGTGCTCTTAAGGAGAGTCTAGTAACAGTAAC 4948
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 4949 ACTTTCTGGCCATTTCTAGTTTAGATTCTCTTCGTTACTGAAACTTTTGAGAAATATTACCTGTGGATTAATTT 5022
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 5023 TGCACAATGTTCTATTCTCATAATGACTTACAAATTAAACTAGGTTTTTATTGAACTACCTCACACTAATTTTC 5096
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 5097 TATGCTTTCCCAAGTAAGCTGTTGCCCTGTTAGATCTTTACTGAGTGAATTATAAATGTGTGTTAAATACTTTC 5170
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 5171 TAGCCAATGTTGACACAATACCAGTAAGTATGTAAAGTATATACCTTACATCAGTAAGAGACACGTGTAAAATC 5244
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 5245 TTTGACTGTATGTCTTGCAAAATTGTGCTCGTTGACATTATTACTGTTTTTGTAAGTAGAAACCTGCTCGTGAT 5318
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 5319 ATCGGTCCATTTACATTTTACAAAAGGAGTAAATCTTAGTAAAAATTTTACGAAGAAATAAATTACTTTTGTAG 5392
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 5393 GCCCAATATTTGGTATATTTTTGAGAAGCTGTTAATCTTTTAGCTGAATAATGAAGTTAGACTGAATTACGTGT 5466
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 5467 CTCCCTGGACTGTGACATCTATTTTCTCATTACAGTTTATCCTGGTCAGCAGGGTGTCACACCTGGAAACCTGA 5540
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 5541 GTATGATAGCTGACATTTGCTTTTCTCCCTCTGCGATGTCATTCCTCCTCCATTCCTCTCCTTCCCTGTGTTCC 5614
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 5615 GTTCCCTCTCCTTTCCTCTAGACAAAACAAAATGGGGCACTTTTTAGGGAATGCTGAGATCATTATTGTGGTTT 5688
Query 1282 -------------------------------------------------------------------------- 1281
Sbjct 5689 TTCATCATTCATGCCCTAGTCATTAAACATGCACCACTGGAATGTAAACAATGTTATCTAGTATGTCAATTGGT 5762
Query 1282 ------------------------------------------------ 1281
Sbjct 5763 TATAATATTTTAAATAAAAAAGAAAAAAGTGGTATGAAAATTATGAAA 5810
