Nucleotide Global Alignment

Description

• Query: ccsbBroad304_01534
• Subject: NR_073018.3
• Aligned Length: 2173
• Identities: 1027
• Gaps: 1088

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCTGCGTCCCCACTATGGCGGCGCCCATGCAGCCCAGCGCGTTGTGGGCTCCCGCCGGGGTCCCCCGCGGCTGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGCCGCCGCCTACGCCGCTGCCTCCGCCTTCCTGCCCCGCGTCGGGCCGGGCGCCACCTCCCCCCTGCCTCCCT  148

Query    1  ----------------------------------------ATGGGACTCTTGGTATTTGTGCGCAATCTGCTGC  34
                                                    ||||||||||||||||||||||||||||||||||
Sbjct  149  CTCCGCTGTGGTCATTTAGGAAATCGTAAATCATGTGAAGATGGGACTCTTGGTATTTGTGCGCAATCTGCTGC  222

Query   35  TAGCCCTCTGCCTCTTTCTGGTACTGGGATTTTTGTATTATTCTGCGTGGAAGCTACACTTACTCCAGTGGGAG  108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TAGCCCTCTGCCTCTTTCTGGTACTGGGATTTTTGTATTATTCTGCGTGGAAGCTACACTTACTCCAGTGGGAG  296

Query  109  GAGGACTCCAATTCAGTGGTTCTTTCCTTTGACTCCGCTGGACAAACACTAGGCTCAGAGTATGATCGGTTGGG  182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GAGGACTCCAATTCAGTGGTTCTTTCCTTTGACTCCGCTGGACAAACACTAGGCTCAGAGTATGATCGGTTGGG  370

Query  183  CTTCCTCCTGAATCTGGACTCTAAACTGCCTGCTGAATTAGCCACCAAGTACGCAAACTTTTCAGAGGGAGCTT  256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CTTCCTCCTGAATCTGGACTCTAAACTGCCTGCTGAATTAGCCACCAAGTACGCAAACTTTTCAGAGGGAGCTT  444

Query  257  GCAAGCCTGGCTATGCTTCAGCCTTGATGACGGCCATCTTCCCCC-----------------------------  301
            |||||||||||||||||||||||||||||||||||||||||||||                             
Sbjct  445  GCAAGCCTGGCTATGCTTCAGCCTTGATGACGGCCATCTTCCCCCGTGAGAAGGTTCGAACCTTCATGGCATGG  518

Query  302  --------------------------------------------------------------------------  301
                                                                                      
Sbjct  519  TTGGCATGGTATGGTTGATGATTTATCATCCTGGCCTCCTCGAGAGAATGGACTCTGAGAGAAAGACAAGAGCA  592

Query  302  ----------------------------------------------------------------------GGTT  305
                                                                                  ||||
Sbjct  593  GAAGCTGCACATTGACCATCATAGTGGTCCAGAAATGATTATTTGGACTAGGGCCGTAGCAGTGGAGAGAGGTT  666

Query  306  CTCCAAGCCAGCACCCATGTTCCTGGATGACTCCTTTCGCAAGTGGGCTAGAATCCGGGAGTTCGTGCCGCCTT  379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CTCCAAGCCAGCACCCATGTTCCTGGATGACTCCTTTCGCAAGTGGGCTAGAATCCGGGAGTTCGTGCCGCCTT  740

Query  380  TTGGGATCAAAGGTCAAGACAATCTGATCAAAGCCATCTTGTCAGTCACCAAAGAGTACCGCCTGACCCCTGCC  453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TTGGGATCAAAGGTCAAGACAATCTGATCAAAGCCATCTTGTCAGTCACCAAAGAGTACCGCCTGACCCCTGCC  814

Query  454  TTGGACAGCCTCCGCTGCCGCCGCTGCATCATCGTGGGCAATGGAGGCGTTCTTGCCAACAAGTCTCTGGGGTC  527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TTGGACAGCCTCCGCTGCCGCCGCTGCATCATCGTGGGCAATGGAGGCGTTCTTGCCAACAAGTCTCTGGGGTC  888

Query  528  ACGAATTGACGACTATGACATTGTGGTGAGACTGAATTCAGCACCAGTGAAAGGCTTTGAGAAGGACGTGGGCA  601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACGAATTGACGACTATGACATTGTGGTGAGACTGAATTCAGCACCAGTGAAAGGCTTTGAGAAGGACGTGGGCA  962

Query  602  GCAAAACGACACTGCGCATCACCTACCCCGAGGGCGCCATGCAGCGGCCTGAGCAGTACGAGCGCGATTCTCTC  675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GCAAAACGACACTGCGCATCACCTACCCCGAGGGCGCCATGCAGCGGCCTGAGCAGTACGAGCGCGATTCTCTC  1036

Query  676  TTTGTCCTCGCCGGCTTCAAGTGGCAGGACTTTAAGTGGTTGAAATACATCGTCTACAAGGAGAGAGTGAGTGC  749
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct 1037  TTTGTCCTCGCCGGCTTCAAGTGGCAGGACTTTAAGTGGTTGAAATACATCGTCTACAAGGAGAGAGTG-----  1105

Query  750  ATC--GGATG-----------------------GCTTCT--GGAA-----------------------------  767
             ||  |||.|                       |.||||  ||||                             
Sbjct 1106  -TCCTGGACGCACAATATCCAGCGAGAGAAAGAGTTTCTGCGGAAGCTGGTGAAAGCTCGCGTCATCACTGATC  1178

Query  768  -----------ATCTG---------------TGGCCACTCGAGTGCCCA---------AGGAG-----------  795
                       |||||               |||||| |.||| |||||         |||||           
Sbjct 1179  TAAGCAGTGGCATCTGAGTGGGCCCAGCACATGGCCA-TAGAG-GCCCAGGCACCACCAGGAGCAGCAGCCAGC  1250

Query  796  -CCCCCTGAGATTCGAATCCTCA-ACCCATA---------TTTCA-----TCCAGG-------AGGCC------  840
             ||.||| |.|...||.||.||| |||||.|         |..||     .|||||       |||||      
Sbjct 1251  ACCACCT-ACACAGGAGTCTTCAGACCCAGAGAAGGACGGTGCCAAGGGCCCCAGGGGCAGCAAGGCCTTGGTG  1323

Query  841  ----------------GCCT-----------------------------TCACCCTCATT--------------  855
                            ||||                             |||.|||||||              
Sbjct 1324  GAGCAGCCAGAGCTGTGCCTGCTCAGCAGCCAGTCTCAGAGACCAGCACTCAGCCTCATTCAGCATGGGTCCTT  1397

Query  856  ----------GGCC----------------TGCCCTTCA----------------------ACAATGGCC----  877
                      ||||                |||||..||                      |||.|||.|    
Sbjct 1398  GATGCCAGAGGGCCAGCAGGCTCCTGGCTGTGCCCAGCAGGCCCAGCATGCAGGTGGTGGGACACTGGGCAGCA  1471

Query  878  ---------------TCA-----------------------------------------TGGGCCGGGGGAA--  893
                           |||                                         ||||..|||||.|  
Sbjct 1472  AGGCTGCTGCCGGAATCACTTCTCCAATCAGTGTTTGGTGTATTATCATTTTGTGAATTTGGGTAGGGGGGAGG  1545

Query  894  -------------------------------------------------------CAT-------------CCC  899
                                                                   |||             |.|
Sbjct 1546  GTAGGGATAATTTATTTTTAAATAAGGTTGGAGATGTCAAGTTGGGTTCACTTGCCATGCAGGAAGAGGCCCAC  1619

Query  900  TA-----CCCTT--GGCAGTGT--------------------GGCAG--------TGACCATGGCACTACACGG  938
            ||     |||.|  ||||||||                    |||||        .||||| |.|..|||...|
Sbjct 1620  TAGAGGGCCCATCAGGCAGTGTTACCTGTTAGCTCCCTGTGGGGCAGGAGTGCCAGGACCA-GCCTGTACCTTG  1692

Query  939  CTGTG-------ACGA-GGTGGCAGTCGCAGGATTT----------------GGCT-ATGACA-----------  976
            |||||       |.|| |||||     |||||||.|                .||| ||||||           
Sbjct 1693  CTGTGGGGCTACAGGATGGTGG-----GCAGGATCTCAAGCCAGCCCCCTCCAGCTCATGACACTGTTTGGCCT  1761

Query  977  ----TGAGCACA------------CCCA---ACGCACCCCT-GCACTACTAT---GAGACCGTTCGCATGGCAG  1027
                ||.|.|.|            ||||   || ||.|||| ||..|.|.||   ||.|||.|       |.||
Sbjct 1762  TTCTTGGGGAGAAGGCGGGGTATTCCCACTCAC-CAGCCCTAGCTGTCCCATGGGGAAACCCT-------GGAG  1827

Query 1028  CCATCAAAGAGTCCT--GGACGC--ACAATA----TCCAGCG----AG-AGAAAGAGTTT--------------  1074
            |||||       |||  ||| ||  ||||.|    .||||.|    || |||||||..||              
Sbjct 1828  CCATC-------CCTTCGGA-GCCAACAAGACCGCCCCAGGGCTATAGCAGAAAGAACTTTAAAGCTCAGGAGG  1893

Query 1075  -----------CTGCGGAAGCTGGTGAA-AGCTCGCGTCATCACTGATCTAAGCAG-TGGCATC----------  1125
                       ||.||...||||| ||| |||||.|.||  |||.|.|    |||| ||  |||          
Sbjct 1894  GTGACGCCCAGCTCCGCCTGCTGG-GAAGAGCTCCCCTC--CACAGCT----GCAGCTG--ATCCATAGGACTA  1958

Query 1126  --------------------------------------------------------------------------  1125
                                                                                      
Sbjct 1959  CCGCAGGCCCGGACTCACCAACTTGCCACATGTTCTAGGTTTCAGCAACAAGACTGCCAGGTGGTTGGGTTCTG  2032

Query 1126  --------------------------------------------------------------------------  1125
                                                                                      
Sbjct 2033  CCTTTAGCCTGGACCAAAGGGAAGTGAGGCCCAAGGAGCTTACCCAAGCTGTGGCAGCCGTCCCAGGCCACCCC  2106

Query 1126  ---------------------------  1125
                                       
Sbjct 2107  CATGGAAGCAATAAAGCTCTTCCCTGA  2133