Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01534
- Subject:
- XR_001737368.1
- Aligned Length:
- 1783
- Identities:
- 974
- Gaps:
- 743
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCGCCGCTGCGTCCCCACTATGGCGGCGCCCATGCAGCCCAGCGCGTTGTGGGCTCCCGCCGGGGTCCCCCGCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCTGTCGCCGCCGCCTACGCCGCTGCCTCCGCCTTCCTGCCCCGCGTCGGGCCGGGCGCCACCTCCCCCCTGCC 148
Query 1 ---------------------------------------------ATGGGACTCTTGGTATTTGTGCGCAATCT 29
|||||||||||||||||||||||||||||
Sbjct 149 TCCCTCTCCGCTGTGGTCATTTAGGAAATCGTAAATCATGTGAAGATGGGACTCTTGGTATTTGTGCGCAATCT 222
Query 30 GCTGCTAGCCCTCTGCCTCTTTCTGGTACTGGGATTTTTGTATTATTCTGCGTGGAAGCTACACTTACTCCAGT 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GCTGCTAGCCCTCTGCCTCTTTCTGGTACTGGGATTTTTGTATTATTCTGCGTGGAAGCTACACTTACTCCAGT 296
Query 104 GGGAGGAGGACTCCA---------------------------------------------ATTCAGTGGTTCTT 132
||||||||||||||| ||||||||||||||
Sbjct 297 GGGAGGAGGACTCCAGTAAGTATAGTCACTCTAGCTCACCCCAGGAGAAGCCTGTTGCAGATTCAGTGGTTCTT 370
Query 133 TCCTTTGACTCCGCTGGACAAACACTAGGCTCAGAGTATGATCGGTTGGGCTTCCTCCTGAATCTGGACTCTAA 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCCTTTGACTCCGCTGGACAAACACTAGGCTCAGAGTATGATCGGTTGGGCTTCCTCCTGAATCTGGACTCTAA 444
Query 207 ACT----------------------------------------------------------------------- 209
|||
Sbjct 445 ACTCTCACCGAGGACTCTCTGCACGGTGGTTTTTGGCCTTGACTGCATATTGGAATCACCTGGAGAGCCTAAAA 518
Query 210 -------------------------------------------------------------------------- 209
Sbjct 519 AATTACTGATGCCTGCATCCCACCCTCTAGAGATTTTGAAGTCACTGAGCGAGGACACAGCCTTTGCATTAGGA 592
Query 210 -----------------GCCTGCTGAATTAGCCACCAAGTACGCAAACTTTTCAGAGGGAGCTTGCAAGCCTGG 266
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTTTTAAAGCTGCCCAGGCCTGCTGAATTAGCCACCAAGTACGCAAACTTTTCAGAGGGAGCTTGCAAGCCTGG 666
Query 267 CTATGCTTCAGCCTTGATGACGGCCATCTTCCCCCGGTTCTCCAAGCCAGCACCCATGTTCCTGGATGACTCCT 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTATGCTTCAGCCTTGATGACGGCCATCTTCCCCCGGTTCTCCAAGCCAGCACCCATGTTCCTGGATGACTCCT 740
Query 341 TTCGCAAGTGGGCTAGAATCCGGGAGTTCGTGCCGCCTTTTGGGATCAAAGGTCAAGACAATCTGATCAAAGCC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTCGCAAGTGGGCTAGAATCCGGGAGTTCGTGCCGCCTTTTGGGATCAAAGGTCAAGACAATCTGATCAAAGCC 814
Query 415 ATCTTGTCAGTCACCAAAGAGTACCGCCTGACCCCTGCCTTGGACAGCCTCCGCTGCCGCCGCTGCATCATCGT 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ATCTTGTCAGTCACCAAAGAGTACCGCCTGACCCCTGCCTTGGACAGCCTCCGCTGCCGCCGCTGCATCATCGT 888
Query 489 GGGCAATGGAGGCGTTCTTGCCAACAAGTCTCTGGGGTCACGAATTGACGACTATGACATTGTGGTGAGACTGA 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GGGCAATGGAGGCGTTCTTGCCAACAAGTCTCTGGGGTCACGAATTGACGACTATGACATTGTGGTGAGACTGA 962
Query 563 ATTCAGCACCAGTGAAAGGCTTTGAGAAGGACGTGGGCAGCAAAACGACACTGCGCATCACCTACCCCGAGGGC 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ATTCAGCACCAGTGAAAGGCTTTGAGAAGGACGTGGGCAGCAAAACGACACTGCGCATCACCTACCCCGAGGGC 1036
Query 637 GCCATGCAGCGGCCTGAGCAGTACGAGCGCGATTCTCTCTTTGTCCTCGCCGGCTTCAAGTGGCAGGACTTTAA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GCCATGCAGCGGCCTGAGCAGTACGAGCGCGATTCTCTCTTTGTCCTCGCCGGCTTCAAGTGGCAGGACTTTAA 1110
Query 711 GTGGTTGAAATACATCGTCTACAAGGAGAGAGTGAGTGCATC--------GGATGGC----TTCTGGAAATCTG 772
|||||||||||||||||||||||||||||||||| .|| |.|.||| |.|.|| |.|
Sbjct 1111 GTGGTTGAAATACATCGTCTACAAGGAGAGAGTG-----CTCTTTCCCAAGCAAGGCCAAGTACAGG----CAG 1175
Query 773 TGGCCACTCG--AGTGCCCAAGGAGCCCCCTGAGATTCGAA-------------TCCTCAACCCATATTTCATC 831
||.|.|.|.| || |||| |..|||| ||| |||..|| ||.
Sbjct 1176 TGTCAAGTAGGTAG----CAAG------CAAGAGA---GAAGACAGAAGTCAGGTCCAGAA----------ATT 1226
Query 832 CAGGAGG------------CCGCCTTCACCCTCATTGGCCTGCCCTTCAACAATGGCCTCATGGGCCGGGGGAA 893
|||||.| ||||| |||||||.|||| |||.|..||.|
Sbjct 1227 CAGGAAGCTGAGGAGCTCTCCGCC-----------TGGCCTGGCCTT----------------GGCAGCAGGCA 1273
Query 894 CAT---------------------CCCTAC----CCTTGGCAGTGT--GGCAGT------GAC----------C 924
.|| |.|||| |.|||| ||||| .||||| ||| .
Sbjct 1274 GATTCAAGTTTTATGTTTCAGTTACTCTACTGGGCTTTGG-AGTGTTCAGCAGTCAAAAAGACAGACACTGTAA 1346
Query 925 ATGG-----CACTACA------CGG----------------------CTGTGACGAGGTGGCAGTCGCAGGATT 965
|||| ||.||.| |.| ||| ||.|.||||||||| |||.||
Sbjct 1347 ATGGCCAGTCATTAGAATAGTCCAGATGAAAGATGATAAGACCTGCCCTG-GAAGTGGTGGCAGT---AGGTTT 1416
Query 966 TGGCT-ATGACATG----------------AGCACA-----CCCAAC----------GCACCCC---------T 998
.||.| |.|..||| ||||.| .|.||| |||.|.| |
Sbjct 1417 GGGATCAAGGGATGGATCTGTACCGTTCTAAGCAGATAGACTCGAACTTGATGACCAGCAGCACAAGGTAAGAT 1490
Query 999 GCACT-------ACTATGAGA---------CCGTTCGCA--TGGCAGCCATCAAAGAGTCCTGGACGCACAAT- 1053
|.||| ..||.|||| |.||||.|| |.||.|...|..|||| |||||.|.|||.|
Sbjct 1491 GGACTGGAAAGGTGTAGGAGAATCTCAAGTCAGTTCCCAGGTTGCTGGTTTGGAAGA---CTGGATGGACAGTA 1561
Query 1054 ----ATCCAGCGA-----GAGAAAGAGTTTCTGCGGAAG----CTGGTGAAAGCTCGCGTCATCACT---GATC 1111
|| ||.|| ||||| ||||| |||| ||||.||.| .|.||.| |||.
Sbjct 1562 GAGGAT--AGGGAACAAGGAGAA-----------GGAAGAGGTCTGG-GAAAACTAG---AAACAATTTAGATA 1618
Query 1112 T-----AAGCAGTG--------------------GCATC----------------------------------- 1125
| || ||||| .||||
Sbjct 1619 TCCAACAA-CAGTGTTGGTTACATACATTATGGTACATCCATAAGACAAAATTCCTTTTTTTTTGAGACAGGAC 1691
Query 1126 ------- 1125
Sbjct 1692 CTTTCTC 1698
