Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01562
- Subject:
- NR_161442.2
- Aligned Length:
- 5531
- Identities:
- 1068
- Gaps:
- 4463
Alignment
Query 1 ----ATGGCTGAAGGAAGCCGAGGTGGCCCTACGTGTAGCGGGGTGGGTGGCAGGCAGGACCCAGTCTCCGGCA 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAACATGGCTGAAGGAAGCCGAGGTGGCCCTACGTGTAGCGGGGTGGGTGGCAGGCAGGACCCAGTCTCCGGCA 74
Query 71 GTGGCGGCTGCAACTTTCCAGAGTATGAGCTTCCCGAGCTAAATACGCGCGCTTTCCATGTGGGCGCCTTTGGG 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GTGGCGGCTGCAACTTTCCAGAGTATGAGCTTCCCGAGCTAAATACGCGCGCTTTCCATGTGGGCGCCTTTGGG 148
Query 145 GAGCTGTGGCGGGGCCGTCTGCGCGGGGCCGGGGACTTGTCGCTGAGGGAGCCGCCGGCATCCGCTCTGCCTGG 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GAGCTGTGGCGGGGCCGTCTGCGCGGGGCCGGGGACTTGTCGCTGAGGGAGCCGCCGGCATCCGCTCTGCCTGG 222
Query 219 GAGCCAGGCAGCTGACTCCGACCGGGAGGATGCCGCGGTGGCCAGGGATCTGGACTGCAGCCTGGAGGCGGCGG 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GAGCCAGGCAGCTGACTCCGACCGGGAGGATGCCGCGGTGGCCAGGGATCTGGACTGCAGCCTGGAGGCGGCGG 296
Query 293 CTGAGCTGAGGGCGGTGTGCGGCCTTGATAAACTGAAATGCCTTGAGGACGGTGAGGATCCAGAAGTCATTCCG 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTGAGCTGAGGGCGGTGTGCGGCCTTGATAAACTGAAATGCCTTGAGGACGGTGAGGATCCAGAAGTCATTCCG 370
Query 367 GAGAATACTGACCTGGTGACTTTGGGGGTTAGAAAAAGGTTCTTGGAACATCGGGAAGAAACCATTACAATAGA 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAGAATACTGACCTGGTGACTTTGGGGGTTAGAAAAAGGTTCTTGGAACATCGGGAAGAAACCATTACAATAGA 444
Query 441 TCGAGCCTGCAGACAAGAAACATTCGTTTATGAGATGGAGTCACATGCCATAGGAAAAAAGCCTGAAAATTCAG 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCGAGCCTGCAGACAAGAAACATTCGTTTATGAGATGGAGTCACATGCCATAGGAAAAAAGCCTGAAAATTCAG 518
Query 515 CAGACATGATTGAAGAAGGGGAGCTTATCCTATCTGTGAATATCTTGTACCCTGTTATATTTCATAAGCACAAA 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAGACATGATTGAAGAAGGGGAGCTTATCCTATCTGTGAATATCTTGTACCCTGTTATATTTCATAAGCACAAA 592
Query 589 GAACACAAACCATACCAAACAATGCTGGTGTTGGGCAGTCAAAAACTCACACAACTGAGGGATTCAATTCGATG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAACACAAACCATACCAAACAATGCTGGTGTTGGGCAGTCAAAAACTCACACAACTGAGGGATTCAATTCGATG 666
Query 663 TGTCAGTGACCTCCAGATTGGTGGTGAATTCAGCAACACTCCTGACCAAGCCCCTGAGCACATCAGCAAA---- 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGTCAGTGACCTCCAGATTGGTGGTGAATTCAGCAACACTCCTGACCAAGCCCCTGAGCACATCAGCAAAGTAA 740
Query 733 -GACCTATACAAATCAGCCTTCTTTTATTTTGAAGGAACATTTTATAATGATAAAAGATACCCAGAATGCAGAG 805
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GGACCTATACAAATCAGCCTTCTTTTATTTTGAAGGAACATTTTATAATGATAAAAGATACCCAGAATGCAGAG 814
Query 806 ATTTGAGCAGAACTATCATTGAGTGGTCAGAGTCCCATGATAGAGGCTATGGAAAGTTTCAGACTGCTAGAATG 879
||||||||
Sbjct 815 ATTTGAGC------------------------------------------------------------------ 822
Query 880 GAAGATTTCACCTTCAATGACTTGTGTATTAAACTGGGTTTTCCTTACTTATACTGTCATCAGGGAGACTGTGA 953
Sbjct 823 -------------------------------------------------------------------------- 822
Query 954 ACATGTCATTGTCATTACTGACATAAGGCTTGTGCATCATGATGACTGCTTGGATAGGACATTGTATCCCCTCC 1027
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 -------------------------AGGCTTGTGCATCATGATGACTGCTTGGATAGGACATTGTATCCCCTCC 871
Query 1028 TTATCAAGAAGCATTGGCTATGGACCAGAAAATGTTTTGTTTGTAAAATGTATACAGCCAGATGGGTGACGAAC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 TTATCAAGAAGCATTGGCTATGGACCAGAAAATGTTTTGTTTGTAAAATGTATACAGCCAGATGGGTGACGAAC 945
Query 1102 AATGACAGTTTTGCACCAGAGGACCCATGCTTCTTTTGTGATGTTTGCTTCCGAATGCTGCACTATGATTCAGA 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 AATGACAGTTTTGCACCAGAGGACCCATGCTTCTTTTGTGATGTTTGCTTCCGAATGCTGCACTATGATTCAGA 1019
Query 1176 AGGCAACAAACTGGGGGAATTCCTTGCTTATCCTTATGTTGATCCTGGAACCTTTAAT---------------- 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGGCAACAAACTGGGGGAATTCCTTGCTTATCCTTATGTTGATCCTGGAACCTTTAATTAAGAATAGCTACACT 1093
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1094 CACAAAAATACCCCCTCATGAAATAACTGTTCTCTTGGATGGTTACCTTATTTCTAAGAAACGCCACTGAGGAA 1167
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1168 CAGGATCCACTTTGAACAGTCCGCTAAAGCTATCAAAAAAAAGTCCAAATGACAGATTTTCTTATAATGATAGT 1241
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1242 ATTTAAATGTTTATAACATAGTTTAATTTTATATTTATTCCAGATAGTATTTAATTTAGTGCTTTTTACCCATT 1315
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1316 TTGAGTTGAGTTGTAGTACTTTATATATTCTGACTTTAAATCCTTTGTCAGACACACATATTCTTTCTCCCAAT 1389
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1390 CCATGCCTTCCCTATTCATTCTCTGTCCAGAGTTTTTTGCTAAAGATAGAATTATTAATGATACATCAAGTAGT 1463
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1464 GGAAGTGTTTTGAAAATTCTTTGAAGAATGTGAGAGCTACACCTTCTACCATGAGGCTTCCAAGGTAAAGATCC 1537
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1538 TTCAAATAACTGTAATGGAAACTAGGGAGAATGAATTATTTACAAATAAGACAAAATTAATAGCTTTGGGATTA 1611
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1612 TTTATTTTTTGAGACAAAATCTCGCTCTTGTTGCCCAGGCTGGAATACAGTGGCGCAATCTCAGCTCACTGCAG 1685
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1686 CCTCCGCCTCCCGGATTCAAGTGATTCTCCTGCCACAGCCTCCTGAGTAGCTGGGATTGCAGGCACCTGGCACC 1759
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1760 ATGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTA 1833
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1834 ACCTCAGGCGATCCACCCGCCTAAGCCTCCCAAAATTTTGGGATCACAGGCGTGAGCCACCGCGCCCGGCTGCT 1907
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1908 TTGGGGGAATTTAATCTTAGTGTGCTGTTTAGTAATGTTAGGTTTTGTTTTGGAGGAAACTAGGCATACAAGAC 1981
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 1982 ATGTTAATAAGACTATGTGAATAATGAATTTAAAAAGATCTTGAGTATATACTCATAACTCCAGAAATAACATT 2055
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2056 AACTTGAAGCTTTATTTCTTGACAAAAGCTTTATGAATGTTATGAGTTTAAAATATGTCAATTTAATACTATGA 2129
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2130 TTTAAAAAACAATAGCAGATTTCGTATGACTGTGGGGACATGGAAAAATCAAGATCCTATTGATTGCTAGCTCT 2203
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2204 GGCTCACTTATTCTCCGGTAATGATACTATTGGATATATACCAAAATTATATAAGCAAAAAGAAAAAAAATAAG 2277
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2278 TTTTCCTGGCCCAGGTCTTCCATTCTTCTGGTCCCCTTACTATAGTAATTCTAGTTACTCTCATCTTATTCTGA 2351
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2352 GGAAAAAAAAAAAAACCAAAACTTTTTAAACTTATTTTTTGACATAGGGTCTTACTGTGTCACCCAGGCTGGAG 2425
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2426 TACAGTGGCGTGATCTTGGCTCACTGGAGCCCTGACCTCCCTAGGCTCAGGTGATCCTCCCACCTCAGCCTACC 2499
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2500 GAGTAGCTGAGACATGGTGGCACAGGCCACCATGGCGGGCTAATTTTTTTATTTCTTGTAGATACAGGGTTTCA 2573
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2574 CTATGTTGCGCAGAATAGTCTCGAACTCCTGACCTCAAGTGATCCATCCGCCTTGGCCTCCCAGAGTGCTGCGA 2647
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2648 TTACAGGCATGAACCACAGCGCCCAGCAAAATAAACTTTCTTTATTTTCAGGTCTAGACCATCAGATAGATTTA 2721
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2722 TTCAAATATTTTCTGGGAACCTTTATGGGTAGAACATTTAATACTGTTTAGAAGACTTTTAGGAATACTATAGA 2795
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2796 TTTCAAATGCATCATTTAAAATAAATAAATTCCACTTTCTCTCTCCTAGGTTGTATTTAAATTTGACTGAATAT 2869
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2870 CTGGATGGCTAAGAACAGACATTTATCTTACACATGGAAAACTGACGAAACCTATAAGCCTATGTGTTTGACAG 2943
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 2944 TGAAGTATGTTTTATGGACTTAAATGCCACAAACAGTTAAGTCCATTGGCTTGGAGATGACAAGCACGAGTTTC 3017
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3018 TGGTATGTCTAGTGTTCTCATTCACTGATTCAGTCAGTACACAGATAATCAGTATAGAGAACTTAAGAGGCTGG 3091
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3092 CTTATGTTATACCTAAATTTTTACTTTCTTGTATACAACAATGCTAAAATTGAGCAGATTGATAACTGCCAGCA 3165
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3166 AACCATAGATTTAAGATAAATGAATGATTTACCCAACCCTAAAATTCCATGGGTAAAAATTTTGATTCCTTTAT 3239
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3240 TTTCAATACTGCGTTCCTTATAGGTCTTACATGCATATGCAAGGATATTTTATCTTATTCATTCATTTCATACT 3313
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3314 CTCAAAACACCAAACTTCAAAAAGTTAATTATTGTCATAATGCATTATTCCATGTGTGGTGTCAATACATTTTA 3387
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3388 GCGGACAAAGAAGAAACATGCCAGTTAAAACATTTCTGCTACTGGGATTCTTTATTAATTATTTGAGAATGTTA 3461
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3462 TTTTGCTAGTTCTTAAGGTTAAGTTTTTCATCAAAGACTCAGGTACCTATTATTGTTCCCTGGTGAAACTGAGG 3535
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3536 AGAAAAGTTAATCAACCAGGTTACTCCCACAGTTTGCCCGTGTGTTATGTATCAGTTATACAGGTATCCCACCA 3609
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3610 AGTTCAAGTCAAAAGAAATTCCTAACTTTGTATATTTCTGGAGCTATAAAACCCCTGATTTAAGACAGCTTTTC 3683
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3684 TCTTTTTTCGAGGCAGCTTTTCTTTATGCTTATTTCAATCAAATGTAACACGCCTGTCAAATTACATGTAACAC 3757
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3758 ATTAGCTAATGAAGATAGGCAACTGAAAATGTTGTCATGAACATGTCAACCTGCTTGGTAGTTGAATTTGACTT 3831
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3832 TTATATAATAGTGGATACACATGCACAGAAGTTACTAGAGAAGCAATAGCTATTTCTTTAAACATTCTTCAGGC 3905
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3906 ATCAGTACCATTTAAGGACAATTAGACATTCTAGTTTTACTAGGAGAAAGGTCAGTCATCTCTAACATTGTGTT 3979
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 3980 GCAGAATTACACGACACAAACATAAACACATTTCTGCCTATTAAACCAGTTTCTTTGTTTCTAAAGAGTTTAAT 4053
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4054 GATACAGGTTTGCTATTTCCATTAGAGCATCCTTTTTCTGGCCAATCGGACAAAATAGAGTTAGCAAAGCCCTC 4127
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4128 ACAGCACCCTATGAAAAATCTCTGCTCTTATACAGGATTAGATGCAGACCTCATCTTGACCTAACATCTGTAAC 4201
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4202 CAGGTAAGTGTATGAGTAGGAACACAGACAGCAGTACTGTATCAGCAAAATCTATCATATTATTTGAAATCACT 4275
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4276 GGATATAATATTAATTATAAAGTGTATGGTTCTCTCCAGTTGTTCACATACCAAATCCCAGTCAGTTCTCAGAT 4349
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4350 TCAGATAGATGTATCTGCAATTTCTCCAAGCAGCTAAGAAAACCTTCAATGGTCAGTTCTGCTTGGTCATGGTA 4423
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4424 TGACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCTCCCAGGCTGGAGTGCAGTG 4497
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4498 GGGCAATCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGGAGCT 4571
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4572 GGGATTACAGGCACGTGCCACTGCGCCCGGCTGATGTATGACTCTTTTATCCAGTAATCAAAACACATACGTAC 4645
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4646 ATACACACACATACCAGCCCAAAAGAGGTGTTAAAACATACATATTACACGTACTTTTTGGAGGGGTGGGGTGG 4719
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4720 GGTGGGGTGGGGTGGGGTGGGGGTTATCTATCTCAAAATTACCTTTTGGTGCCTTGTCAAGCTGTGGAGTTTTG 4793
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4794 ACCACACACACAAATTGAGCCAATGAACAATTTCAATGATCCTGAAAGTTCTTAAGTCTTATGAATAATTATCA 4867
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4868 AGAGTTCTGAGAAGTTATCTGTAAATCAGCCTATGACACCATTTCTTGAGAGTTATGATTAAAGAAACAGCAAT 4941
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 4942 TATGCTTGAAGCGAACATACATCAACTAGTTAGAGCAAGGTCAGCCTGTACAAGCTGACATAAATTATGAGAAT 5015
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 5016 GATGCTCTATCTCTAGAATTGGAATATTCTGTGGCTTCTTTGTAAAACTATAGATCTGGTGGGTCATGGGAAGA 5089
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 5090 AAGGGAGGGTGAACAAAAGATAAATATTACCTTTATTTTTTATCATCTTGAGCTTACTGTTTAGTTACCCCGTT 5163
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 5164 TCCCAAAACAGCACAACCTCTGTGACCAGTTAACTAAGAAATTATTTCCTTGGCAGCAAACCCAGAATTCCATC 5237
Query 1234 -------------------------------------------------------------------------- 1233
Sbjct 5238 ACTTACTCTTGTAAATAGCAAGAAAGTAATTTACTAGCAGAGTTTGATAGAAAAATTCTTTAATGAAAACAAGT 5311
Query 1234 ------------------------------------------------------- 1233
Sbjct 5312 TTACACGTTGAACTTATGGCTTAACTAGAATAAATCTAAGTAAGTTAAAACTGTA 5366
