Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01613
- Subject:
- NM_001301853.1
- Aligned Length:
- 1321
- Identities:
- 1044
- Gaps:
- 107
Alignment
Query 1 ATGGAGGTGGTGGACCCGCAGCAGCTGGGCATGTTCACGGAGGGCGAGCTGATGTCGGTGGGTATGGACACGTT 74
|||||.||||.||||||..|||.|.|||||.|.|||.|.|||||||||||||||||||||||.||||||||.||
Sbjct 1 ATGGACGTGGCGGACCCCGAGCCGTTGGGCCTTTTCTCCGAGGGCGAGCTGATGTCGGTGGGCATGGACACCTT 74
Query 75 CATCCACCGCATCGACTCCACCGAGGTCATCTACCAGCCGCGCCGCAAGCGGGCCAAGCTCATCGGCAAGTACC 148
|||||||||||||||||||||||||||.||||||||||||||||||||.||.||||||||||||||||||||||
Sbjct 75 CATCCACCGCATCGACTCCACCGAGGTAATCTACCAGCCGCGCCGCAAACGCGCCAAGCTCATCGGCAAGTACC 148
Query 149 TGATGGGGGACCTGCTGGGGGAAGGCTCTTACGGCAAGGTGAAGGAGGTGCTGGACTCGGAGACGCTGTGCAGG 222
||||||||||||||||.|||||.|||||.|||||||||||||||||||||||||||||.|||||..|.|||.|.
Sbjct 149 TGATGGGGGACCTGCTCGGGGAGGGCTCGTACGGCAAGGTGAAGGAGGTGCTGGACTCCGAGACCTTATGCCGC 222
Query 223 AGGGCCGTCAAGATCCTCAAGAAGAAGAAGTTGCGAAGGATCCCCAACGGGGAGGCCAACGTGAAGAAGGAAAT 296
|||||.||||||||||||||||||||.|||.||||.|||||||||||.||.|||||||||||.||||||||.||
Sbjct 223 AGGGCGGTCAAGATCCTCAAGAAGAAAAAGCTGCGCAGGATCCCCAATGGAGAGGCCAACGTCAAGAAGGAGAT 296
Query 297 TCAACTACTGAGGAGGTTACGGCACAAAAATGTCATCCAGCTGGTGGATGTGTTATACAACGAAGAGAAGCAGA 370
.||.||.|||.||.||.|.|||||....|||||.||||||||.|||||.|||.|.|||||.||.||||||||||
Sbjct 297 CCAGCTGCTGCGGCGGCTGCGGCATCGGAATGTGATCCAGCTTGTGGACGTGCTGTACAATGAGGAGAAGCAGA 370
Query 371 AAATGTATATGGTGATGGAGTACTGCGTGTGTGGCATGCAGGAAATGCTGGACAGCGTGCCGGAGAAGCGTTTC 444
|.||||||||||||||||||||||||||.||||||||||||||.|||||||||||.||||||||||||||.|||
Sbjct 371 AGATGTATATGGTGATGGAGTACTGCGTATGTGGCATGCAGGAGATGCTGGACAGTGTGCCGGAGAAGCGCTTC 444
Query 445 CCAGTGTGCCAGGCCCACGGGTACTTCTGTCAGCTGATTGACGGCCTGGAGTACCTGCATAGCCAGGGCATTGT 518
||.||||||||.||.||.|||||||||.|.||||||||||||||||||||.|||||.||.||||||||||||||
Sbjct 445 CCTGTGTGCCAAGCTCATGGGTACTTCCGCCAGCTGATTGACGGCCTGGAATACCTACACAGCCAGGGCATTGT 518
Query 519 GCACAAGGACATCAAGCCGGGGAACCTGCTGCTCACCACCGGTGGCACCCTCAAAATCTCCGACCTGGGCGTGG 592
.||||||||||||||||||||.||||||||.|||||||||..||||||.|||||.|||||||||||.||.||.|
Sbjct 519 TCACAAGGACATCAAGCCGGGCAACCTGCTACTCACCACCAATGGCACACTCAAGATCTCCGACCTCGGTGTTG 592
Query 593 CCGAGGCACTGCACCCGTTCGCGGCGGACGACACCTGCCGGACCAGCCAGGGCTCCCCGGCTTTCCAGCCGCCC 666
|||||||.||||||||.|||||.|.|||.||||||||||||||.|||||||||||||||||.||||||||.||.
Sbjct 593 CCGAGGCCCTGCACCCTTTCGCTGTGGATGACACCTGCCGGACAAGCCAGGGCTCCCCGGCCTTCCAGCCTCCT 666
Query 667 GAGATTGCCAACGGCCTGGACACTTTCTCCGGCTTCAAGGTGGACATCTGGTCGGCTGGGGTCACCCTCTACAA 740
|||||||||||.||.||||||||.||.||.||.||||||||||||||||||||.|||||||||||.||.|||||
Sbjct 667 GAGATTGCCAATGGACTGGACACCTTTTCAGGTTTCAAGGTGGACATCTGGTCAGCTGGGGTCACACTTTACAA 740
Query 741 CATCACCACGGGTCTGTACCCCTTCGAAGGGGACAACATCTACAAGTTGTTTGAGAACATCGGGAAGGGGAG-C 813
||||||||||||.||||||||.||.||.||||||||.|||||||||.|.|||||||||||.||| ||.|||| |
Sbjct 741 CATCACCACGGGCCTGTACCCATTTGAGGGGGACAATATCTACAAGCTCTTTGAGAACATTGGG-AGAGGAGAC 813
Query 814 TACGCCATCCCGGGCGACTGTGGCCCCCCGCTCTCTGACCTGCTGAAAGGGATGCTTGAGTACGAACCGGCCAA 887
|.|.|||||||..|.|||||.|||||.||.|||||||||||.||...|||||||.|.|||||.||.||||||||
Sbjct 814 TTCACCATCCCTTGTGACTGCGGCCCACCACTCTCTGACCTACTCCGAGGGATGTTGGAGTATGAGCCGGCCAA 887
Query 888 GAGGTTCTCCATCCGGCAGATCCGGCAGCACAGCTGGTTCCGGAAGAAACATCCTCCGGCTGAAGCACCAGTGC 961
|||||||||||||||.|||||..||||||||||||||||||||||||||||.||||.||||||.||.|..||.|
Sbjct 888 GAGGTTCTCCATCCGACAGATTAGGCAGCACAGCTGGTTCCGGAAGAAACACCCTCTGGCTGAGGCGCTCGTAC 961
Query 962 CCATCCCACCGAGCCCAGACACCAAGGACCGGTGGCGCAGCATGACTGTGGTGCCGTACTTGGAGGACCTGCAC 1035
|.||||||||.|||||||||||.||||||||.||||||||.||||||||.|||||.|||.|||||||||||||.
Sbjct 962 CTATCCCACCAAGCCCAGACACTAAGGACCGCTGGCGCAGTATGACTGTAGTGCCCTACCTGGAGGACCTGCAT 1035
Query 1036 GGC---GCGGACGAGGACGAG------GACCTCTTCGACATCGAGGATGACATCATCTACACTCAGGACTTCAC 1100
||| |||||.|||||.||| |||.|.||.|||||.|||||.|.|||.||||||||.|||||||||||
Sbjct 1036 GGCCGTGCGGAGGAGGAGGAGGAGGAAGACTTGTTTGACATTGAGGACGGCATTATCTACACCCAGGACTTCAC 1109
Query 1101 GGTGCCCGGACAGGTCCCAGAAGAGGAGGCCAGTCACAATGGACAGCGCCGGGGCCTCCCCAAGGC----CGTG 1170
.|||||.|| .||| |||||||| .||||.|| ||.||| ||.|
Sbjct 1110 AGTGCCTGG---TGTC------GAGGAGGC----------------GGCCGAGG------CAGGGCTTAGCGAG 1152
Query 1171 --TGTATGAACGGCACAGAGGCGGCGCAGCTGAGCACCAAATCCAGGGCGGAGGGCCGGGCCCCCAACCCTGCC 1242
||.||| ||.|||| .||| ||.|.| |.|.||||||||.||| |||.||
Sbjct 1153 GATGCATG--CGACACA-------TGCA--TGTGGA--AGAGCCAGGGCGCAGG--------------CCTTCC 1199
Query 1243 CGCA-AGGCCTGCTCCGCCAGCAGCAAGATCCGCCGGCTGTCGGCC-----TGCAAGCAGCAG 1299
.|.| ||| .|| ||| ||.|| ||.|.|.||.| ||
Sbjct 1200 TGGAGAGG--AGC-CCG--AGGAG-----------GGGTTTGGGGCTTTAGTG---------- 1236