Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01616
- Subject:
- XR_001782567.1
- Aligned Length:
- 5514
- Identities:
- 771
- Gaps:
- 4665
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGGGTAAAGTCCGGTTATAATTAGAAAGTATCTATGGCCTTTAAGATTGAACACAAAGTCGAGGATACTTCTCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACTTGAGACCAAGTCTTCACTAGCGCCAATTGTTGACCACTACTCTGGTCGATACGCCATTTGTTATCCCCAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCAAATACGGAGGGGAAGGGAATAGGGGCACCGTTGAAGAGGAAGGGCAGTGAGAAGAACCACACTTTTCTAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAATTCTTCAAATCCCAGGGCTCTTGACAGCAAGGAGGAGAGAGGTGGGCTTAAGTTTTCCAAATCAAACAAAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTCTTTATCCTACAACTCTGCCCGGTAGTTAAAAGTCAGTTGCTTCTTTTCTCGTACAGGCTAAGCAGAAAATT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCTAAGCAGCCTCTGATTTATATAGCTATGGAAACGGACTCTCCTAGATTCCCTCAAGTTATTCAAATTGTTAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TAAAAGGTGACTGGACCGCCTACACGACTTCGAGAGGCCCCACAACCACTAGCATCATAATCCCCAAATTCCTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCGCAGCCCGATCCAGGGCATCTCATCTGCAGTTACGCCCTACGGGAACAAGTCTCTGAGCCCGAACCGCACA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GATTTTATACCCAACAGGTCCCTTCTTTAAGGCGGAATATCTCTTGAGCATCATCGGAACGTTTTCCCTCATCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAGGGAGCAGGAACCAGCTTGTCTTCAACCTGAGGAGTCCGCAGAGGGCCGAACAATAAGAACAGTGCGGAAAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TACGGAATCGAAGCCAGACAGACCACCCCCGCCTTTTTTTTTTTTTTTTTTTGTTTCTGCCTTTCGAGGGGCAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GGGAAGGTGTGCCCGGAATGCTTCCGGCGCTGGAGCGCGCTGGCCCTTTAAGCAGGAGCTCGGGGAGCGGCCCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGTATGGGGCGGGCCCAGGGGCGGGCGAGCCCTGAGCCGGCGCGGTCTCGTAGCCGGATTTGGAGCGCGGCGCC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGCGGGGGCCGGAGGGGGCGGCGCGGCGGACCTCGGTGGCCTCGGACGCTCCTCCTCGAGAGCGGCCGCCGCCC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCCTCCGCCCGCTCTAGCAGCTCTCTCGCCCCGGCCGGCAGCCGCCGCCGCTCCAGGCCGCTCACTTGGGACGC 1110
Query 1 -------------------------------------------ATGAAGGACCGTCTGGAGCAGCTGAAGGCCA 31
|||||||||||.|||||||||||||||||||
Sbjct 1111 GCTCACCTGAGACAAGGCGCCCGCCGCCCTCACCTGGGCCAGGATGAAGGACCGGCTGGAGCAGCTGAAGGCCA 1184
Query 32 AGCAGCTGACACAGGATGATGATACTGATGCGGTTGAGATTGCTATCGACAACACGGCTTTTATGGACGAGTTC 105
||||||||||.|||||||||||.||.||.|.||||||||||||.||.||||||||.||.||.||||||||||||
Sbjct 1185 AGCAGCTGACGCAGGATGATGACACGGACGAGGTTGAGATTGCCATTGACAACACAGCCTTCATGGACGAGTTC 1258
Query 106 TTTTCTGAGATTGAGGAAACTCGGCTTAACATTGACAAGATCTCAGAACATGTAGAGGAGGCTAAGAAACTCTA 179
||.||||||||.||||||||.|||||.|||||||||||||||||.||.|||||||||||.||||||||||||||
Sbjct 1259 TTCTCTGAGATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTA 1332
Query 180 CAGTATCATTCTCTCTGCACCGATTCCAGAGCCAAAAACCAAGGATGACCTAGAGCAGCTCACGACTGAGATTA 253
||||||||||||||||||||||||.|||||||||||||||||.||||||||.||.||||||||.||||||||.|
Sbjct 1333 CAGTATCATTCTCTCTGCACCGATCCCAGAGCCAAAAACCAAAGATGACCTTGAACAGCTCACAACTGAGATCA 1406
Query 254 AGAAAAGGGCCAACAACGTCCGGAACAAACTGAAGAGCATGGAGAAGCATATTGAAGAAGATGAGGTCAGGTCA 327
||||||||||||||||||||||||||||.||||||||||||||||||||.|||||.|||||||||||..|||||
Sbjct 1407 AGAAAAGGGCCAACAACGTCCGGAACAAGCTGAAGAGCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCA 1480
Query 328 TCGGCAGACCTTCGGATTCGGAAATCCCAGCACTCTGTCCTTTCTCGGAAGTTTGTGGAGGTGATGACCAAATA 401
||.||||||||||||||.||.||.|||||||||||.|||||.||.|||||||||||||||||||||||.||.||
Sbjct 1481 TCTGCAGACCTTCGGATACGAAAGTCCCAGCACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTA 1554
Query 402 CAATGAAGCTCAAGTGGACTTCCGAGAACGCAGCAAAGGGCGAATCCAGCGGCAGCTCGAAATTACTGGCAAAA 475
||||||.|||||.|||||||||||.|||||||||||||||||.|||||.||||||||.||||||||||||||.|
Sbjct 1555 CAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTACTGGCAAGA 1628
Query 476 AGACAACCGATGAGGAGCTGGAGGAGATGTTGGAGAGTGGCAACCCGGCCATCTTCACTTCTGGGATCATTGAC 549
|||||||.||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 1629 AGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGGATCATTGAC 1702
Query 550 TCACAGATTTCCAAGCAAGCCCTCAGTGAGATTGAGGGACGACACAAGGACATTGTGAGGCTGGAGAGCAGCAT 623
||.|||||||||||||||||||||||.|||||||||||.||.|||||||||||.||.|||||||||||||||||
Sbjct 1703 TCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCAT 1776
Query 624 CAAGGAGCTTCACGACATGTTTATGGACATCGCCATGCTGGTGGAGAATCAGGGTGAGATGTTAGATAACATAG 697
|||||||||.||.||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||
Sbjct 1777 CAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAGGGGGAGATGTTAGATAACATAG 1850
Query 698 AGTTGAATGTCATGCACACAGTGGACCACGTGGAGAAGGCACGAGATGAAACGAAAAAAGCTGTGAAATACCAG 771
||||||||||||||||||||||||||||.||||||||||||||.||||||||.||||.|||..||||.||.|||
Sbjct 1851 AGTTGAATGTCATGCACACAGTGGACCATGTGGAGAAGGCACGGGATGAAACTAAAAGAGCCATGAAGTATCAG 1924
Query 772 AGTCAGGCCCGGAAGAA----ATTGATAATTATCA-------TTG---TG------CTAGT------------- 812
.|||||||.|||||||| .|| ||| ||| || ||.||
Sbjct 1925 GGTCAGGCTCGGAAGAACCAGCTT--------TCACTCCAGCTTGGCCTGACCACTCTTGTCTCCAGACGGGAA 1990
Query 813 ---AGTTGTG-------TTGCTGGGCAT-----------------TTTAGCATTGATTA---------TTGGAC 850
|||| || |..|||.|.|| |||| .||..||| ||||||
Sbjct 1991 CAGAGTT-TGAAAGGCCTCCCTGAGAATGAGGGGGTACCTGTTACTTTA--TTTCCTTATAACCATCCTTGGAC 2061
Query 851 TTTCCGTTGGGCT-----------------------GAAT---------------------------------- 867
.| |||| ||||
Sbjct 2062 CT-------GGCTCAGCAAACAATCTACCCCCAGAAGAATCTAACCTACCTGATGCAGTCCTGAGTTCTCATCA 2128
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2129 AAACCACCTCCCATCCTAGCAGCTGAAGTACCCTCTTCTGGACTCTGTGAAGCAACCCTGTGTGTTGGTGTGTA 2202
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2203 GGTTATGCTTTGTGCCTTGGACAATCCCCGTGAGACAAGCCAAGGCACTGTATTTCTACCTCATGGAGTATTCT 2276
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2277 CCTGGAATATACTTTGTAGGGGAATAACTAACAAAGTAGAGGAATTCTAAGTTTAGTAGTAAATGTGGCTTGGA 2350
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2351 ACAGAGTCCCTAGCTGGCAGGATGCCAATCCTTAGTTTGTTGTTTGCTGTCCTGAAAACATGAAAGACTAATAG 2424
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2425 ATGCCATTTTGGTCTTACAAGTTGGCTTATTTGAAATTTACCTTTTAATTAAGCTCTAACTTCATTGTGGGTCA 2498
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2499 CATTGGTTTTTCTCTATATTCACTCTTGTTTATTTAGAGAGACCAGGGTGACAGGTCTTCTGAAGCTACCATTG 2572
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2573 GCAAAGAGTAAGGTTATAGAATTTGCTGGCTAGTCACTGTTAGATAATTGCTCTTTGTGAAGACATTACTTTGA 2646
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2647 GGCCAACCAGAACCAGGGATTTAAAACTGGTCCAGGGACAAGGTGCTACAGTCTCAGGCTCTGGAAATGTCAGT 2720
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2721 CATTTGTGTGTTCCAGGTGTACTTTTGTAATTATGTATGTGAGAGATATGTACATAATTGTCTGCCTCTCAGGA 2794
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2795 AGTAGGAAAACTAGAAGATACTATGACCTCAAAAAAAAAAAAAAAAAAAAAGACAAAGGTAAGCAGCAGCTAAA 2868
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2869 ATCAGCTAGGGAATATATGCTTACCTCAAGTGAATCACTGTAGAAATGTGATTTTTTCCCCCCTTGCCATCAAG 2942
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2943 CTTGTTTTCTGGATGGCTGCTGATATGGGAATCAAATGAGACCTTTGGAGTAAGGACTAAATTGGTTCCCATCG 3016
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3017 AAGTTTTCTGCATAGCAGATAGTGTGTAATATTTACCTCCATCTGTTGCTTACAAGAGGGTTGTCCAGAGAACC 3090
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3091 TCTCACACCCGTCTGATGTTATTTACACTATCCATGTGATGTTTCTGTCTGGCGGAAGAATTGGGAGGCTCTAG 3164
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3165 AGCAGTTCTTCCTGCTTTCTTTTGTCTCCTGTAATTCTTATCATGGAGGCAATAGCCTGGAAATCGTTAGTGAT 3238
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3239 AAGCCTCAGACCTTTGGTGGTCCCTGCCAGTATCCCGGATTTTGGGTATATAACCCCCCAATTTAATGTTTCTA 3312
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3313 TGGGATAGATGAGTAGTAATCTAGTCTAGGCACTGCCTATGAGCTTTCTTTGTAAAGGTACCTCCTCAGTCACC 3386
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3387 CAGCATTCAAGATGGAGCCTCAGGGATGCCTTCCTCCCTTTGGCTGTGATGTCTGGCAGGACTGACTCCGGCTA 3460
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3461 GGAGGGGAAACAACCCTTAGTGCAGGCCTTTTCTCTCCTCCTTCAGGCCAGCTGAAAGTTTGAAATGCCACATA 3534
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3535 TGAAGGGCTTTTGTTGTTTGTAATTTTTTAAATGTAAACTTGATTATTTTATTGCTAATTTAAAAATAAATGAC 3608
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3609 TTTATACTGATTGTAAAACAGCTCTGGGGCCATCTCTCTGCAATGTTTTGGTGATTTGGCGCCACCATGTGGTA 3682
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3683 ACTTTTGGTGCCGCAGAAGCTCTAGAAATATCTGTTAGAATGCTATTCAGAAGGCAGAGAGGACACTCACATCA 3756
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3757 TGGTCTGATTCTAAGTGTCTAACCTGGAAACATTCTCTACACAAGCCAGATCCATCCGTTTTCCTTCTGCATTC 3830
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3831 CCTGTCCCTTCTGTCCCTCCACGTCTGGCCCCATCTGTCTCCTTTTTGTCAAAGTGTGTATCTGCACAGTGATG 3904
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3905 TCGATTCTCATGTATTTCTCTCTCCTTGTGATGAGCAGAAGAAGATCATGATCATGATCTGCTGTATTATCCTT 3978
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3979 GCCATCATCTTGGCTTCTACCATTGGGGGCATATTTGCCTGAAAAAGATGGGATCTCAACGGGCATCTGCAATC 4052
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4053 TTCCACCTCTGTGGTGCCATCATGTCTCCCCTCAGTCTTCCTCAGCTATGTCTCTTTTCACTAGGAAACTCACA 4126
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4127 ACACAGGGCACCAATCAACTGTTTATTAAATGAACAAATTAATGAAAATGTAGAATTGAAAGAGATAGGGATGA 4200
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4201 AGGAACAGGGAGCACGGCAATATACAGTTGGTTTAGATGGCCCTTAAAGGTCTGGCCTGCATGGTAGAGAGACA 4274
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4275 TAACGAACGGGTCCCTGTTTAGAGCACAACACACACACAGCCTGAAGGCCAGGATGGTGGTGAAGAGGCAGGCA 4348
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4349 TTACAACATGCCCAACTCAACAGGGTCATACTGAACTCAGTGAGGCTGTCTCTCAGATCATGGTACTCCCTACT 4422
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4423 TTTACTCTAATGGCTCTTCTAGGTCGCATTCTTAACCAACCACATGTCTGCTTCCTCTTTCAGGGTCCAAGAAT 4496
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4497 AGTTTTTAATTCATAGATTGTTTAAGGATAGGCACTATGCCTATCTCGAATACTACCATGTCCCTTCTCTTAGC 4570
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4571 ACACAGTGCCTGCCACTTTCAGATGTCTGCTTACTTATAGTCAAGCTTTGATTTCATTCATGGATGAGTCTTTG 4644
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4645 AGCTTGGCTTTTAACTCTTTAAGGTACCATTGGGAACATGATTTTTTATTAATCAGAGGCACATAGAAAAATAT 4718
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4719 GGCAACACCCCTATTACCATACCATACCTGTCACAGTGTTCTGTTTTGAGGGATGGTGCTTATGTAGAAGCTGG 4792
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4793 CTTTGTATTGATGGTATAAATTTCTATTAGTACTCTCATTTGTCAGAGATGATAGTTGGTCTCAGGATGGAGGT 4866
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4867 TCATTCAATAAATTCATTCCTCCAACAAAAGAAAGAAGTTTATACTATGACCCAGCTCCCAAACAAGCACACCA 4940
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4941 TGTTATCTGGAACAATGGAAGGAAGCCAAGGGGATAAAGTGGGACGAGGCTGCTGCTTCAGCCTCACCATGTCT 5014
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5015 GTGGTAGAATAGGCTGCAGGTCAGTGAAATGTGCAAGAAACTGGTCCAAACACATTTCTAACTCAAGTGTCACT 5088
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5089 GTGTTCCACTTTAAAAATAATTTACTTTGAGACTATTACATTTTACATTCATTAAAAATAAATGAAAATCTGCG 5162
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5163 TCTAACTTTTGAAAGTAAGTGTTAACTTACTTGAATGCTGGTTCCCCCAGAAAAACTGATTACTCTTGTTACGG 5236
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5237 ACAAATGAAGCTGGCACCATGAAGTTTTGGATCACATGGGACCCTCAATTATCCAGCAGTGTGTGTGTGCTCTA 5310
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5311 CATACACTAGCTCCTAAAGGGACAGAGAGCCAAGATGCCCCTCCTTAGCTAGCTTCAGATCTAGGAAGGGTTTC 5384
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5385 AACTTTTGTTAAAGTTCTTTTGCTAAATTCCTTGTCATATTCCATGTTTTCCCTTCTGAGACTGACAGAAGATG 5458
Query 868 -------------------------------------- 867
Sbjct 5459 GGCAGCTGGGCATTAATAAATATCTGTTGAACCCACTA 5496
