Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01616
- Subject:
- XR_001782568.1
- Aligned Length:
- 3724
- Identities:
- 780
- Gaps:
- 2861
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAGGGTAAAGTCCGGTTATAATTAGAAAGTATCTATGGCCTTTAAGATTGAACACAAAGTCGAGGATACTTCTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAACTTGAGACCAAGTCTTCACTAGCGCCAATTGTTGACCACTACTCTGGTCGATACGCCATTTGTTATCCCCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATCAAATACGGAGGGGAAGGGAATAGGGGCACCGTTGAAGAGGAAGGGCAGTGAGAAGAACCACACTTTTCTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAATTCTTCAAATCCCAGGGCTCTTGACAGCAAGGAGGAGAGAGGTGGGCTTAAGTTTTCCAAATCAAACAAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGTCTTTATCCTACAACTCTGCCCGGTAGTTAAAAGTCAGTTGCTTCTTTTCTCGTACAGGCTAAGCAGAAAAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCTAAGCAGCCTCTGATTTATATAGCTATGGAAACGGACTCTCCTAGATTCCCTCAAGTTATTCAAATTGTTA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTAAAAGGTGACTGGACCGCCTACACGACTTCGAGAGGCCCCACAACCACTAGCATCATAATCCCCAAATTCCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CGCCGCAGCCCGATCCAGGGCATCTCATCTGCAGTTACGCCCTACGGGAACAAGTCTCTGAGCCCGAACCGCAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGATTTTATACCCAACAGGTCCCTTCTTTAAGGCGGAATATCTCTTGAGCATCATCGGAACGTTTTCCCTCATC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAAGGGAGCAGGAACCAGCTTGTCTTCAACCTGAGGAGTCCGCAGAGGGCCGAACAATAAGAACAGTGCGGAAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATACGGAATCGAAGCCAGACAGACCACCCCCGCCTTTTTTTTTTTTTTTTTTTGTTTCTGCCTTTCGAGGGGCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGGGAAGGTGTGCCCGGAATGCTTCCGGCGCTGGAGCGCGCTGGCCCTTTAAGCAGGAGCTCGGGGAGCGGCCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGGTATGGGGCGGGCCCAGGGGCGGGCGAGCCCTGAGCCGGCGCGGTCTCGTAGCCGGATTTGGAGCGCGGCGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CGGCGGGGGCCGGAGGGGGCGGCGCGGCGGACCTCGGTGGCCTCGGACGCTCCTCCTCGAGAGCGGCCGCCGCC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CGCCTCCGCCCGCTCTAGCAGCTCTCTCGCCCCGGCCGGCAGCCGCCGCCGCTCCAGGCCGCTCACTTGGGACG 1110
Query 1 --------------------------------------------ATGAAGGACCGTCTGGAGCAGCTGAAGGCC 30
|||||||||||.||||||||||||||||||
Sbjct 1111 CGCTCACCTGAGACAAGGCGCCCGCCGCCCTCACCTGGGCCAGGATGAAGGACCGGCTGGAGCAGCTGAAGGCC 1184
Query 31 AAGCAGCTGACACAGGATGATGATACTGATGCGGTTGAGATTGCTATCGACAACACGGCTTTTATGGACGAGTT 104
|||||||||||.|||||||||||.||.||.|.||||||||||||.||.||||||||.||.||.|||||||||||
Sbjct 1185 AAGCAGCTGACGCAGGATGATGACACGGACGAGGTTGAGATTGCCATTGACAACACAGCCTTCATGGACGAGTT 1258
Query 105 CTTTTCTGAGATTGAGGAAACTCGGCTTAACATTGACAAGATCTCAGAACATGTAGAGGAGGCTAAGAAACTCT 178
|||.||||||||.||||||||.|||||.|||||||||||||||||.||.|||||||||||.|||||||||||||
Sbjct 1259 CTTCTCTGAGATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCT 1332
Query 179 ACAGTATCATTCTCTCTGCACCGATTCCAGAGCCAAAAACCAAGGATGACCTAGAGCAGCTCACGACTGAGATT 252
|||||||||||||||||||||||||.|||||||||||||||||.||||||||.||.||||||||.||||||||.
Sbjct 1333 ACAGTATCATTCTCTCTGCACCGATCCCAGAGCCAAAAACCAAAGATGACCTTGAACAGCTCACAACTGAGATC 1406
Query 253 AAGAAAAGGGCCAACAACGTCCGGAACAAACTGAAGAGCATGGAGAAGCATATTGAAGAAGATGAGGTCAGGTC 326
|||||||||||||||||||||||||||||.||||||||||||||||||||.|||||.|||||||||||..||||
Sbjct 1407 AAGAAAAGGGCCAACAACGTCCGGAACAAGCTGAAGAGCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTC 1480
Query 327 ATCGGCAGACCTTCGGATTCGGAAATCCCAGCACTCTGTCCTTTCTCGGAAGTTTGTGGAGGTGATGACCAAAT 400
|||.||||||||||||||.||.||.|||||||||||.|||||.||.|||||||||||||||||||||||.||.|
Sbjct 1481 ATCTGCAGACCTTCGGATACGAAAGTCCCAGCACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGT 1554
Query 401 ACAATGAAGCTCAAGTGGACTTCCGAGAACGCAGCAAAGGGCGAATCCAGCGGCAGCTCGAAATTACTGGCAAA 474
|||||||.|||||.|||||||||||.|||||||||||||||||.|||||.||||||||.||||||||||||||.
Sbjct 1555 ACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTACTGGCAAG 1628
Query 475 AAGACAACCGATGAGGAGCTGGAGGAGATGTTGGAGAGTGGCAACCCGGCCATCTTCACTTCTGGGATCATTGA 548
||||||||.||||||||||||||.|||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 1629 AAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGGATCATTGA 1702
Query 549 CTCACAGATTTCCAAGCAAGCCCTCAGTGAGATTGAGGGACGACACAAGGACATTGTGAGGCTGGAGAGCAGCA 622
|||.|||||||||||||||||||||||.|||||||||||.||.|||||||||||.||.||||||||||||||||
Sbjct 1703 CTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCA 1776
Query 623 TCAAGGAGCTTCACGACATGTTTATGGACATCGCCATGCTGGTGGAGAATCAGGGTGAGATGTTAGATAACATA 696
||||||||||.||.||||||||||||||||||||||||||||||||.||||||||.||||||||||||||||||
Sbjct 1777 TCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAGGGGGAGATGTTAGATAACATA 1850
Query 697 GAGTTGAATGTCATGCACACAGTGGACCACGTGGAGAAGGCACGAGATGAAACGAAAAAAGCTGTGAAATACCA 770
|||||||||||||||||||||||||||||.||||||||||||||.||||||||.||||.|||..||||.||.||
Sbjct 1851 GAGTTGAATGTCATGCACACAGTGGACCATGTGGAGAAGGCACGGGATGAAACTAAAAGAGCCATGAAGTATCA 1924
Query 771 GAGTCAGGCCCGGAA---GAAATT---------------GATA---------ATTATCATTG-TGCTAG----- 811
|.|||||||.||||| ||..|| ||.| |||.|..||| |||| |
Sbjct 1925 GGGTCAGGCTCGGAAGGTGAGGTTTTCCTTCTGTCTTCAGACAAGAGAGTCCATTTTGTTTGCTGCT-GCGCTT 1997
Query 812 ---------------------TAGTTGTGTTG----------------CTGGG----------CAT--TTTA-- 834
|..||.||||| ||||| ||| ||.|
Sbjct 1998 TCTCTCTCCTCTCTTTCTGTCTCTTTCTGTTGCCACCACATCTTGCATCTGGGGAAAGGGAGCCATGATTGACC 2071
Query 835 GCATTGATTA----TTGGACTTTCCGT---TGGGCT-----GAAT----------------------------- 867
|||||||..| .||||| |.|| |||||| |||.
Sbjct 2072 GCATTGAGAACAACATGGAC---CAGTCAGTGGGCTTTGTGGAACGGGCTGTGGCAGATACCAAAAAGGCGGTC 2142
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2143 AAGTATCAGAGTGAAGCCCGGAGGAAGAAGATCATGATCATGATCTGCTGTATTATCCTTGCCATCATCTTGGC 2216
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2217 TTCTACCATTGGGGGCATATTTGCCTGAAAAAGATGGGATCTCAACGGGCATCTGCAATCTTCCACCTCTGTGG 2290
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2291 TGCCATCATGTCTCCCCTCAGTCTTCCTCAGCTATGTCTCTTTTCACTAGGAAACTCACAACACAGGGCACCAA 2364
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2365 TCAACTGTTTATTAAATGAACAAATTAATGAAAATGTAGAATTGAAAGAGATAGGGATGAAGGAACAGGGAGCA 2438
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2439 CGGCAATATACAGTTGGTTTAGATGGCCCTTAAAGGTCTGGCCTGCATGGTAGAGAGACATAACGAACGGGTCC 2512
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2513 CTGTTTAGAGCACAACACACACACAGCCTGAAGGCCAGGATGGTGGTGAAGAGGCAGGCATTACAACATGCCCA 2586
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2587 ACTCAACAGGGTCATACTGAACTCAGTGAGGCTGTCTCTCAGATCATGGTACTCCCTACTTTTACTCTAATGGC 2660
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2661 TCTTCTAGGTCGCATTCTTAACCAACCACATGTCTGCTTCCTCTTTCAGGGTCCAAGAATAGTTTTTAATTCAT 2734
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2735 AGATTGTTTAAGGATAGGCACTATGCCTATCTCGAATACTACCATGTCCCTTCTCTTAGCACACAGTGCCTGCC 2808
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2809 ACTTTCAGATGTCTGCTTACTTATAGTCAAGCTTTGATTTCATTCATGGATGAGTCTTTGAGCTTGGCTTTTAA 2882
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2883 CTCTTTAAGGTACCATTGGGAACATGATTTTTTATTAATCAGAGGCACATAGAAAAATATGGCAACACCCCTAT 2956
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2957 TACCATACCATACCTGTCACAGTGTTCTGTTTTGAGGGATGGTGCTTATGTAGAAGCTGGCTTTGTATTGATGG 3030
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3031 TATAAATTTCTATTAGTACTCTCATTTGTCAGAGATGATAGTTGGTCTCAGGATGGAGGTTCATTCAATAAATT 3104
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3105 CATTCCTCCAACAAAAGAAAGAAGTTTATACTATGACCCAGCTCCCAAACAAGCACACCATGTTATCTGGAACA 3178
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3179 ATGGAAGGAAGCCAAGGGGATAAAGTGGGACGAGGCTGCTGCTTCAGCCTCACCATGTCTGTGGTAGAATAGGC 3252
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3253 TGCAGGTCAGTGAAATGTGCAAGAAACTGGTCCAAACACATTTCTAACTCAAGTGTCACTGTGTTCCACTTTAA 3326
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3327 AAATAATTTACTTTGAGACTATTACATTTTACATTCATTAAAAATAAATGAAAATCTGCGTCTAACTTTTGAAA 3400
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3401 GTAAGTGTTAACTTACTTGAATGCTGGTTCCCCCAGAAAAACTGATTACTCTTGTTACGGACAAATGAAGCTGG 3474
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3475 CACCATGAAGTTTTGGATCACATGGGACCCTCAATTATCCAGCAGTGTGTGTGTGCTCTACATACACTAGCTCC 3548
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3549 TAAAGGGACAGAGAGCCAAGATGCCCCTCCTTAGCTAGCTTCAGATCTAGGAAGGGTTTCAACTTTTGTTAAAG 3622
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3623 TTCTTTTGCTAAATTCCTTGTCATATTCCATGTTTTCCCTTCTGAGACTGACAGAAGATGGGCAGCTGGGCATT 3696
Query 868 ------------------------ 867
Sbjct 3697 AATAAATATCTGTTGAACCCACTA 3720
