Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01616
- Subject:
- XR_001782569.1
- Aligned Length:
- 5608
- Identities:
- 795
- Gaps:
- 4741
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGTAAAGTCCGGTTATAATTAGAAAGTATCTATGGCCTTTAAGATTGAACACAAAGTCGAGGATACTTCTCGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTTGAGACCAAGTCTTCACTAGCGCCAATTGTTGACCACTACTCTGGTCGATACGCCATTTGTTATCCCCAAAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAAATACGGAGGGGAAGGGAATAGGGGCACCGTTGAAGAGGAAGGGCAGTGAGAAGAACCACACTTTTCTAAAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATTCTTCAAATCCCAGGGCTCTTGACAGCAAGGAGGAGAGAGGTGGGCTTAAGTTTTCCAAATCAAACAAACGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTTTATCCTACAACTCTGCCCGGTAGTTAAAAGTCAGTTGCTTCTTTTCTCGTACAGGCTAAGCAGAAAATTGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TAAGCAGCCTCTGATTTATATAGCTATGGAAACGGACTCTCCTAGATTCCCTCAAGTTATTCAAATTGTTAGTA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAAGGTGACTGGACCGCCTACACGACTTCGAGAGGCCCCACAACCACTAGCATCATAATCCCCAAATTCCTCGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CGCAGCCCGATCCAGGGCATCTCATCTGCAGTTACGCCCTACGGGAACAAGTCTCTGAGCCCGAACCGCACAGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTTTATACCCAACAGGTCCCTTCTTTAAGGCGGAATATCTCTTGAGCATCATCGGAACGTTTTCCCTCATCAAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGGAGCAGGAACCAGCTTGTCTTCAACCTGAGGAGTCCGCAGAGGGCCGAACAATAAGAACAGTGCGGAAAATA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CGGAATCGAAGCCAGACAGACCACCCCCGCCTTTTTTTTTTTTTTTTTTTGTTTCTGCCTTTCGAGGGGCATGG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAAGGTGTGCCCGGAATGCTTCCGGCGCTGGAGCGCGCTGGCCCTTTAAGCAGGAGCTCGGGGAGCGGCCCAGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TATGGGGCGGGCCCAGGGGCGGGCGAGCCCTGAGCCGGCGCGGTCTCGTAGCCGGATTTGGAGCGCGGCGCCGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CGGGGGCCGGAGGGGGCGGCGCGGCGGACCTCGGTGGCCTCGGACGCTCCTCCTCGAGAGCGGCCGCCGCCCGC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CTCCGCCCGCTCTAGCAGCTCTCTCGCCCCGGCCGGCAGCCGCCGCCGCTCCAGGCCGCTCACTTGGGACGCGC 1110
Query 1 -----------------------------------------ATGAAGGACCGTCTGGAGCAGCTGAAGGCCAAG 33
|||||||||||.|||||||||||||||||||||
Sbjct 1111 TCACCTGAGACAAGGCGCCCGCCGCCCTCACCTGGGCCAGGATGAAGGACCGGCTGGAGCAGCTGAAGGCCAAG 1184
Query 34 CAGCTGACACAGGATGATGATACTGATGCGGTTGAGATTGCTATCGACAACACGGCTTTTATGGACGAGTTCTT 107
||||||||.|||||||||||.||.||.|.||||||||||||.||.||||||||.||.||.||||||||||||||
Sbjct 1185 CAGCTGACGCAGGATGATGACACGGACGAGGTTGAGATTGCCATTGACAACACAGCCTTCATGGACGAGTTCTT 1258
Query 108 TTCTGAGATTGAGGAAACTCGGCTTAACATTGACAAGATCTCAGAACATGTAGAGGAGGCTAAGAAACTCTACA 181
.||||||||.||||||||.|||||.|||||||||||||||||.||.|||||||||||.||||||||||||||||
Sbjct 1259 CTCTGAGATCGAGGAAACACGGCTCAACATTGACAAGATCTCGGAGCATGTAGAGGAAGCTAAGAAACTCTACA 1332
Query 182 GTATCATTCTCTCTGCACCGATTCCAGAGCCAAAAACCAAGGATGACCTAGAGCAGCTCACGACTGAGATTAAG 255
||||||||||||||||||||||.|||||||||||||||||.||||||||.||.||||||||.||||||||.|||
Sbjct 1333 GTATCATTCTCTCTGCACCGATCCCAGAGCCAAAAACCAAAGATGACCTTGAACAGCTCACAACTGAGATCAAG 1406
Query 256 AAAAGGGCCAACAACGTCCGGAACAAACTGAAGAGCATGGAGAAGCATATTGAAGAAGATGAGGTCAGGTCATC 329
||||||||||||||||||||||||||.||||||||||||||||||||.|||||.|||||||||||..|||||||
Sbjct 1407 AAAAGGGCCAACAACGTCCGGAACAAGCTGAAGAGCATGGAGAAGCACATTGAGGAAGATGAGGTTCGGTCATC 1480
Query 330 GGCAGACCTTCGGATTCGGAAATCCCAGCACTCTGTCCTTTCTCGGAAGTTTGTGGAGGTGATGACCAAATACA 403
.||||||||||||||.||.||.|||||||||||.|||||.||.|||||||||||||||||||||||.||.||||
Sbjct 1481 TGCAGACCTTCGGATACGAAAGTCCCAGCACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTGATGACAAAGTACA 1554
Query 404 ATGAAGCTCAAGTGGACTTCCGAGAACGCAGCAAAGGGCGAATCCAGCGGCAGCTCGAAATTACTGGCAAAAAG 477
||||.|||||.|||||||||||.|||||||||||||||||.|||||.||||||||.||||||||||||||.|||
Sbjct 1555 ATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAATTACTGGCAAGAAG 1628
Query 478 ACAACCGATGAGGAGCTGGAGGAGATGTTGGAGAGTGGCAACCCGGCCATCTTCACTTCTGGGATCATTGACTC 551
|||||.||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 1629 ACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGGATCATTGACTC 1702
Query 552 ACAGATTTCCAAGCAAGCCCTCAGTGAGATTGAGGGACGACACAAGGACATTGTGAGGCTGGAGAGCAGCATCA 625
.|||||||||||||||||||||||.|||||||||||.||.|||||||||||.||.|||||||||||||||||||
Sbjct 1703 CCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTGGAGAGCAGCATCA 1776
Query 626 AGGAGCTTCACGACATGTTTATGGACATCGCCATGCTGGTGGAGAATCAGGGTGAGATGTTAGATAACATAGAG 699
|||||||.||.||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||
Sbjct 1777 AGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAGGGGGAGATGTTAGATAACATAGAG 1850
Query 700 TTGAATGTCATGCACACAGTGGACCACGTGGAGAAGGCACGAGATGAAACGAAAAAAGCTGTGAAATACCAGAG 773
||||||||||||||||||||||||||.||||||||||||||.||||||||.||||.|||..||||.||.|||.|
Sbjct 1851 TTGAATGTCATGCACACAGTGGACCATGTGGAGAAGGCACGGGATGAAACTAAAAGAGCCATGAAGTATCAGGG 1924
Query 774 TCAGGCCCGGAAGAAATTGATAATTATCATTGTGCTAGTAGTTGTGTTGCTGGGCATTTTAGCATTGATTATTG 847
||||||.|||||||||||||||||||||||||||.||||||||||||||||||||||||||||.||||||||||
Sbjct 1925 TCAGGCTCGGAAGAAATTGATAATTATCATTGTGGTAGTAGTTGTGTTGCTGGGCATTTTAGCGTTGATTATTG 1998
Query 848 GACTTTCCGTTGGGCTGAAT------------------------------------------------------ 867
||||.||||||||||||||.
Sbjct 1999 GACTGTCCGTTGGGCTGAAATAAGAGTGGCCTAAGGGGCTGCTGCACTGAAATAACCAGCTTTCACTCCAGCTT 2072
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2073 GGCCTGACCACTCTTGTCTCCAGACGGGAACAGAGTTTGAAAGGCCTCCCTGAGAATGAGGGGGTACCTGTTAC 2146
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2147 TTTATTTCCTTATAACCATCCTTGGACCTGGCTCAGCAAACAATCTACCCCCAGAAGAATCTAACCTACCTGAT 2220
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2221 GCAGTCCTGAGTTCTCATCAAAACCACCTCCCATCCTAGCAGCTGAAGTACCCTCTTCTGGACTCTGTGAAGCA 2294
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2295 ACCCTGTGTGTTGGTGTGTAGGTTATGCTTTGTGCCTTGGACAATCCCCGTGAGACAAGCCAAGGCACTGTATT 2368
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2369 TCTACCTCATGGAGTATTCTCCTGGAATATACTTTGTAGGGGAATAACTAACAAAGTAGAGGAATTCTAAGTTT 2442
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2443 AGTAGTAAATGTGGCTTGGAACAGAGTCCCTAGCTGGCAGGATGCCAATCCTTAGTTTGTTGTTTGCTGTCCTG 2516
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2517 AAAACATGAAAGACTAATAGATGCCATTTTGGTCTTACAAGTTGGCTTATTTGAAATTTACCTTTTAATTAAGC 2590
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2591 TCTAACTTCATTGTGGGTCACATTGGTTTTTCTCTATATTCACTCTTGTTTATTTAGAGAGACCAGGGTGACAG 2664
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2665 GTCTTCTGAAGCTACCATTGGCAAAGAGTAAGGTTATAGAATTTGCTGGCTAGTCACTGTTAGATAATTGCTCT 2738
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2739 TTGTGAAGACATTACTTTGAGGCCAACCAGAACCAGGGATTTAAAACTGGTCCAGGGACAAGGTGCTACAGTCT 2812
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2813 CAGGCTCTGGAAATGTCAGTCATTTGTGTGTTCCAGGTGTACTTTTGTAATTATGTATGTGAGAGATATGTACA 2886
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2887 TAATTGTCTGCCTCTCAGGAAGTAGGAAAACTAGAAGATACTATGACCTCAAAAAAAAAAAAAAAAAAAAAGAC 2960
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2961 AAAGGTAAGCAGCAGCTAAAATCAGCTAGGGAATATATGCTTACCTCAAGTGAATCACTGTAGAAATGTGATTT 3034
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3035 TTTCCCCCCTTGCCATCAAGCTTGTTTTCTGGATGGCTGCTGATATGGGAATCAAATGAGACCTTTGGAGTAAG 3108
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3109 GACTAAATTGGTTCCCATCGAAGTTTTCTGCATAGCAGATAGTGTGTAATATTTACCTCCATCTGTTGCTTACA 3182
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3183 AGAGGGTTGTCCAGAGAACCTCTCACACCCGTCTGATGTTATTTACACTATCCATGTGATGTTTCTGTCTGGCG 3256
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3257 GAAGAATTGGGAGGCTCTAGAGCAGTTCTTCCTGCTTTCTTTTGTCTCCTGTAATTCTTATCATGGAGGCAATA 3330
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3331 GCCTGGAAATCGTTAGTGATAAGCCTCAGACCTTTGGTGGTCCCTGCCAGTATCCCGGATTTTGGGTATATAAC 3404
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3405 CCCCCAATTTAATGTTTCTATGGGATAGATGAGTAGTAATCTAGTCTAGGCACTGCCTATGAGCTTTCTTTGTA 3478
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3479 AAGGTACCTCCTCAGTCACCCAGCATTCAAGATGGAGCCTCAGGGATGCCTTCCTCCCTTTGGCTGTGATGTCT 3552
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3553 GGCAGGACTGACTCCGGCTAGGAGGGGAAACAACCCTTAGTGCAGGCCTTTTCTCTCCTCCTTCAGGCCAGCTG 3626
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3627 AAAGTTTGAAATGCCACATATGAAGGGCTTTTGTTGTTTGTAATTTTTTAAATGTAAACTTGATTATTTTATTG 3700
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3701 CTAATTTAAAAATAAATGACTTTATACTGATTGTAAAACAGCTCTGGGGCCATCTCTCTGCAATGTTTTGGTGA 3774
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3775 TTTGGCGCCACCATGTGGTAACTTTTGGTGCCGCAGAAGCTCTAGAAATATCTGTTAGAATGCTATTCAGAAGG 3848
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3849 CAGAGAGGACACTCACATCATGGTCTGATTCTAAGTGTCTAACCTGGAAACATTCTCTACACAAGCCAGATCCA 3922
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3923 TCCGTTTTCCTTCTGCATTCCCTGTCCCTTCTGTCCCTCCACGTCTGGCCCCATCTGTCTCCTTTTTGTCAAAG 3996
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3997 TGTGTATCTGCACAGTGATGTCGATTCTCATGTATTTCTCTCTCCTTGTGATGAGCAGAAGAAGATCATGATCA 4070
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4071 TGATCTGCTGTATTATCCTTGCCATCATCTTGGCTTCTACCATTGGGGGCATATTTGCCTGAAAAAGATGGGAT 4144
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4145 CTCAACGGGCATCTGCAATCTTCCACCTCTGTGGTGCCATCATGTCTCCCCTCAGTCTTCCTCAGCTATGTCTC 4218
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4219 TTTTCACTAGGAAACTCACAACACAGGGCACCAATCAACTGTTTATTAAATGAACAAATTAATGAAAATGTAGA 4292
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4293 ATTGAAAGAGATAGGGATGAAGGAACAGGGAGCACGGCAATATACAGTTGGTTTAGATGGCCCTTAAAGGTCTG 4366
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4367 GCCTGCATGGTAGAGAGACATAACGAACGGGTCCCTGTTTAGAGCACAACACACACACAGCCTGAAGGCCAGGA 4440
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4441 TGGTGGTGAAGAGGCAGGCATTACAACATGCCCAACTCAACAGGGTCATACTGAACTCAGTGAGGCTGTCTCTC 4514
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4515 AGATCATGGTACTCCCTACTTTTACTCTAATGGCTCTTCTAGGTCGCATTCTTAACCAACCACATGTCTGCTTC 4588
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4589 CTCTTTCAGGGTCCAAGAATAGTTTTTAATTCATAGATTGTTTAAGGATAGGCACTATGCCTATCTCGAATACT 4662
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4663 ACCATGTCCCTTCTCTTAGCACACAGTGCCTGCCACTTTCAGATGTCTGCTTACTTATAGTCAAGCTTTGATTT 4736
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4737 CATTCATGGATGAGTCTTTGAGCTTGGCTTTTAACTCTTTAAGGTACCATTGGGAACATGATTTTTTATTAATC 4810
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4811 AGAGGCACATAGAAAAATATGGCAACACCCCTATTACCATACCATACCTGTCACAGTGTTCTGTTTTGAGGGAT 4884
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4885 GGTGCTTATGTAGAAGCTGGCTTTGTATTGATGGTATAAATTTCTATTAGTACTCTCATTTGTCAGAGATGATA 4958
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4959 GTTGGTCTCAGGATGGAGGTTCATTCAATAAATTCATTCCTCCAACAAAAGAAAGAAGTTTATACTATGACCCA 5032
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5033 GCTCCCAAACAAGCACACCATGTTATCTGGAACAATGGAAGGAAGCCAAGGGGATAAAGTGGGACGAGGCTGCT 5106
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5107 GCTTCAGCCTCACCATGTCTGTGGTAGAATAGGCTGCAGGTCAGTGAAATGTGCAAGAAACTGGTCCAAACACA 5180
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5181 TTTCTAACTCAAGTGTCACTGTGTTCCACTTTAAAAATAATTTACTTTGAGACTATTACATTTTACATTCATTA 5254
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5255 AAAATAAATGAAAATCTGCGTCTAACTTTTGAAAGTAAGTGTTAACTTACTTGAATGCTGGTTCCCCCAGAAAA 5328
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5329 ACTGATTACTCTTGTTACGGACAAATGAAGCTGGCACCATGAAGTTTTGGATCACATGGGACCCTCAATTATCC 5402
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5403 AGCAGTGTGTGTGTGCTCTACATACACTAGCTCCTAAAGGGACAGAGAGCCAAGATGCCCCTCCTTAGCTAGCT 5476
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5477 TCAGATCTAGGAAGGGTTTCAACTTTTGTTAAAGTTCTTTTGCTAAATTCCTTGTCATATTCCATGTTTTCCCT 5550
Query 868 ---------------------------------------------------------- 867
Sbjct 5551 TCTGAGACTGACAGAAGATGGGCAGCTGGGCATTAATAAATATCTGTTGAACCCACTA 5608
