Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01616
- Subject:
- XR_001782570.1
- Aligned Length:
- 3734
- Identities:
- 687
- Gaps:
- 2971
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCACATCGCAGAGGGTAAAGTCCGGTTATAATTAGAAAGTATCTATGGCCTTTAAGATTGAACACAAAGTCGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GATACTTCTCGAACTTGAGACCAAGTCTTCACTAGCGCCAATTGTTGACCACTACTCTGGTCGATACGCCATTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTTATCCCCAAATCAAATACGGAGGGGAAGGGAATAGGGGCACCGTTGAAGAGGAAGGGCAGTGAGAAGAACCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CACTTTTCTAAAAATTCTTCAAATCCCAGGGCTCTTGACAGCAAGGAGGAGAGAGGTGGGCTTAAGTTTTCCAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATCAAACAAACGTCTTTATCCTACAACTCTGCCCGGTAGTTAAAAGTCAGTTGCTTCTTTTCTCGTACAGGCTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGCAGAAAATTGCTAAGCAGCCTCTGATTTATATAGCTATGGAAACGGACTCTCCTAGATTCCCTCAAGTTATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAAATTGTTAGTAAAAGGTGACTGGACCGCCTACACGACTTCGAGAGGCCCCACAACCACTAGCATCATAATCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCAAATTCCTCGCCGCAGCCCGATCCAGGGCATCTCATCTGCAGTTACGCCCTACGGGAACAAGTCTCTGAGCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CGAACCGCACAGATTTTATACCCAACAGGTCCCTTCTTTAAGGCGGAATATCTCTTGAGCATCATCGGAACGTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTCCCTCATCAAAGGGAGCAGGAACCAGCTTGTCTTCAACCTGAGGAGTCCGCAGAGGGCCGAACAATAAGAAC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGTGCGGAAAATACGGAATCGAAGCCAGACAGACCACCCCCGCCTTTTTTTTTTTTTTTTTTTGTTTCTGCCTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TCGAGGGGCATGGGAAGGTGTGCCCGGAATGCTTCCGGCGCTGGAGCGCGCTGGCCCTTTAAGCAGGAGCTCGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGAGCGGCCCAGGTATGGGGCGGGCCCAGGGGCGGGCGAGCCCTGAGCCGGCGCGGTCTCGTAGCCGGATTTGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGCGCGGCGCCGGCGGGGGCCGGAGGGGGCGGCGCGGCGGACCTCGGTGGCCTCGGACGCTCCTCCTCGAGAGC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGCCGCCGCCCGCCTCCGCCCGCTCTAGCAGCTCTCTCGCCCCGGCCGGCAGCCGCCGCCGCTCCAGGCCGCTC 1110
Query 1 ------------------------------------------------------ATGAAGGACCGTCTGGAGCA 20
|||||||||||.||||||||
Sbjct 1111 ACTTGGGACGCGCTCACCTGAGACAAGGCGCCCGCCGCCCTCACCTGGGCCAGGATGAAGGACCGGCTGGAGCA 1184
Query 21 GCTGAAGGCCAAGCAGCTGACACAGGATGATGATACTGATGCGGTTGAGATTGCTATCGACAACACGGCTTTTA 94
|||||||||||||||||||||.|||||||||||.||.||.|.||||||||||||.||.||||||||.||.||.|
Sbjct 1185 GCTGAAGGCCAAGCAGCTGACGCAGGATGATGACACGGACGAGGTTGAGATTGCCATTGACAACACAGCCTTCA 1258
Query 95 TGGACGAGTTCTTTTCTGAGATTGAGGAAACTCGGCTTAACATTGACAAGATCTCAGAACATGTAGAGGAGGCT 168
|||||||||||||.||||||
Sbjct 1259 TGGACGAGTTCTTCTCTGAG------------------------------------------------------ 1278
Query 169 AAGAAACTCTACAGTATCATTCTCTCTGCACCGATTCCAGAGCCAAAAACCAAGGATGACCTAGAGCAGCTCAC 242
|||||||.||||||||.||.||||||||
Sbjct 1279 ----------------------------------------------AAACCAAAGATGACCTTGAACAGCTCAC 1306
Query 243 GACTGAGATTAAGAAAAGGGCCAACAACGTCCGGAACAAACTGAAGAGCATGGAGAAGCATATTGAAGAAGATG 316
.||||||||.|||||||||||||||||||||||||||||.||||||||||||||||||||.|||||.|||||||
Sbjct 1307 AACTGAGATCAAGAAAAGGGCCAACAACGTCCGGAACAAGCTGAAGAGCATGGAGAAGCACATTGAGGAAGATG 1380
Query 317 AGGTCAGGTCATCGGCAGACCTTCGGATTCGGAAATCCCAGCACTCTGTCCTTTCTCGGAAGTTTGTGGAGGTG 390
||||..|||||||.||||||||||||||.||.||.|||||||||||.|||||.||.||||||||||||||||||
Sbjct 1381 AGGTTCGGTCATCTGCAGACCTTCGGATACGAAAGTCCCAGCACTCCGTCCTCTCCCGGAAGTTTGTGGAGGTG 1454
Query 391 ATGACCAAATACAATGAAGCTCAAGTGGACTTCCGAGAACGCAGCAAAGGGCGAATCCAGCGGCAGCTCGAAAT 464
|||||.||.||||||||.|||||.|||||||||||.|||||||||||||||||.|||||.||||||||.|||||
Sbjct 1455 ATGACAAAGTACAATGAGGCTCAGGTGGACTTCCGTGAACGCAGCAAAGGGCGCATCCAACGGCAGCTTGAAAT 1528
Query 465 TACTGGCAAAAAGACAACCGATGAGGAGCTGGAGGAGATGTTGGAGAGTGGCAACCCGGCCATCTTCACTTCTG 538
|||||||||.||||||||.||||||||||||||.|||||||||||||||||||||||.||||||||||||||||
Sbjct 1529 TACTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTG 1602
Query 539 GGATCATTGACTCACAGATTTCCAAGCAAGCCCTCAGTGAGATTGAGGGACGACACAAGGACATTGTGAGGCTG 612
|||||||||||||.|||||||||||||||||||||||.|||||||||||.||.|||||||||||.||.||||||
Sbjct 1603 GGATCATTGACTCCCAGATTTCCAAGCAAGCCCTCAGCGAGATTGAGGGTCGGCACAAGGACATCGTAAGGCTG 1676
Query 613 GAGAGCAGCATCAAGGAGCTTCACGACATGTTTATGGACATCGCCATGCTGGTGGAGAATCAGGGTGAGATGTT 686
||||||||||||||||||||.||.||||||||||||||||||||||||||||||||.||||||||.||||||||
Sbjct 1677 GAGAGCAGCATCAAGGAGCTCCATGACATGTTTATGGACATCGCCATGCTGGTGGAAAATCAGGGGGAGATGTT 1750
Query 687 AGATAACATAGAGTTGAATGTCATGCACACAGTGGACCACGTGGAGAAGGCACGAGATGAAACGAAAAAAGCTG 760
|||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||.||||.|||..
Sbjct 1751 AGATAACATAGAGTTGAATGTCATGCACACAGTGGACCATGTGGAGAAGGCACGGGATGAAACTAAAAGAGCCA 1824
Query 761 TGAAATACCAGAGTCAGGCCCGGAA---GAAATT---------------GATA---------ATTATCATTG-T 806
||||.||.|||.|||||||.||||| ||..|| ||.| |||.|..||| |
Sbjct 1825 TGAAGTATCAGGGTCAGGCTCGGAAGGTGAGGTTTTCCTTCTGTCTTCAGACAAGAGAGTCCATTTTGTTTGCT 1898
Query 807 GCTAG--------------------------TAGTTGTGTTG----------------CTGGG----------C 828
||| | |..||.||||| ||||| |
Sbjct 1899 GCT-GCGCTTTCTCTCTCCTCTCTTTCTGTCTCTTTCTGTTGCCACCACATCTTGCATCTGGGGAAAGGGAGCC 1971
Query 829 AT--TTTA--GCATTGATTA----TTGGACTTTCCGT---TGGGCT-----GAAT------------------- 867
|| ||.| |||||||..| .||||| |.|| |||||| |||.
Sbjct 1972 ATGATTGACCGCATTGAGAACAACATGGAC---CAGTCAGTGGGCTTTGTGGAACGGGCTGTGGCAGATACCAA 2042
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2043 AAAGGCGGTCAAGTATCAGAGTGAAGCCCGGAGGAAGAAGATCATGATCATGATCTGCTGTATTATCCTTGCCA 2116
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2117 TCATCTTGGCTTCTACCATTGGGGGCATATTTGCCTGAAAAAGATGGGATCTCAACGGGCATCTGCAATCTTCC 2190
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2191 ACCTCTGTGGTGCCATCATGTCTCCCCTCAGTCTTCCTCAGCTATGTCTCTTTTCACTAGGAAACTCACAACAC 2264
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2265 AGGGCACCAATCAACTGTTTATTAAATGAACAAATTAATGAAAATGTAGAATTGAAAGAGATAGGGATGAAGGA 2338
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2339 ACAGGGAGCACGGCAATATACAGTTGGTTTAGATGGCCCTTAAAGGTCTGGCCTGCATGGTAGAGAGACATAAC 2412
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2413 GAACGGGTCCCTGTTTAGAGCACAACACACACACAGCCTGAAGGCCAGGATGGTGGTGAAGAGGCAGGCATTAC 2486
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2487 AACATGCCCAACTCAACAGGGTCATACTGAACTCAGTGAGGCTGTCTCTCAGATCATGGTACTCCCTACTTTTA 2560
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2561 CTCTAATGGCTCTTCTAGGTCGCATTCTTAACCAACCACATGTCTGCTTCCTCTTTCAGGGTCCAAGAATAGTT 2634
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2635 TTTAATTCATAGATTGTTTAAGGATAGGCACTATGCCTATCTCGAATACTACCATGTCCCTTCTCTTAGCACAC 2708
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2709 AGTGCCTGCCACTTTCAGATGTCTGCTTACTTATAGTCAAGCTTTGATTTCATTCATGGATGAGTCTTTGAGCT 2782
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2783 TGGCTTTTAACTCTTTAAGGTACCATTGGGAACATGATTTTTTATTAATCAGAGGCACATAGAAAAATATGGCA 2856
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2857 ACACCCCTATTACCATACCATACCTGTCACAGTGTTCTGTTTTGAGGGATGGTGCTTATGTAGAAGCTGGCTTT 2930
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2931 GTATTGATGGTATAAATTTCTATTAGTACTCTCATTTGTCAGAGATGATAGTTGGTCTCAGGATGGAGGTTCAT 3004
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3005 TCAATAAATTCATTCCTCCAACAAAAGAAAGAAGTTTATACTATGACCCAGCTCCCAAACAAGCACACCATGTT 3078
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3079 ATCTGGAACAATGGAAGGAAGCCAAGGGGATAAAGTGGGACGAGGCTGCTGCTTCAGCCTCACCATGTCTGTGG 3152
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3153 TAGAATAGGCTGCAGGTCAGTGAAATGTGCAAGAAACTGGTCCAAACACATTTCTAACTCAAGTGTCACTGTGT 3226
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3227 TCCACTTTAAAAATAATTTACTTTGAGACTATTACATTTTACATTCATTAAAAATAAATGAAAATCTGCGTCTA 3300
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3301 ACTTTTGAAAGTAAGTGTTAACTTACTTGAATGCTGGTTCCCCCAGAAAAACTGATTACTCTTGTTACGGACAA 3374
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3375 ATGAAGCTGGCACCATGAAGTTTTGGATCACATGGGACCCTCAATTATCCAGCAGTGTGTGTGTGCTCTACATA 3448
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3449 CACTAGCTCCTAAAGGGACAGAGAGCCAAGATGCCCCTCCTTAGCTAGCTTCAGATCTAGGAAGGGTTTCAACT 3522
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3523 TTTGTTAAAGTTCTTTTGCTAAATTCCTTGTCATATTCCATGTTTTCCCTTCTGAGACTGACAGAAGATGGGCA 3596
Query 868 ---------------------------------- 867
Sbjct 3597 GCTGGGCATTAATAAATATCTGTTGAACCCACTA 3630
