Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01659
- Subject:
- XR_002958817.1
- Aligned Length:
- 2900
- Identities:
- 1194
- Gaps:
- 1652
Alignment
Query 1 ----------------------------ATGGCGGAG-GATG-----TTTCCTCAGC-----GGCCCCGAGCCC 35
||..|.||| |||| |.|.|.||.| ||||||||||||
Sbjct 1 ATGAGCAGCAGTATAGCCGTTGCTAAGGATATCAGAGAGATGGGCTATGTACACAACAGCTGGGCCCCGAGCCC 74
Query 36 GCGGGGCTGTGCGGATGGTAGGGATGCCGACCCTACTGAGGAGCAGATGGCAGAAACAGAGAGAAACGACGAGG 109
..||||||||||.|||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TTGGGGCTGTGCAGATGGTAGGGATGCCAACCCTACTGAGGAGCAGATGGCAGAAACAGAGAGAAACGACGAGG 148
Query 110 AGCAGTTCGAATGCCAGGAACTGCTCGAGTGCCAGGTGCAGGTGGGGGCCCCCGAGGAGGAGGAGGAGGAGGAG 183
||||||||||.|||||||||||||||||||||..||||||||||||.|||||| ||||||||||||
Sbjct 149 AGCAGTTCGAGTGCCAGGAACTGCTCGAGTGCTGGGTGCAGGTGGGAGCCCCC---------GAGGAGGAGGAG 213
Query 184 GAGGACGCGGGCCTGGTGGCCGAGGCCGAGGCCGTGGCTGCCGGCTGGATGCTCGATTTCCTCTGCCTCTCTCT 257
||||||.|||||||||||||.|||||||||||.||||||||.||||||||||||||||||||||||||||||||
Sbjct 214 GAGGACCCGGGCCTGGTGGCTGAGGCCGAGGCTGTGGCTGCTGGCTGGATGCTCGATTTCCTCTGCCTCTCTCT 287
Query 258 TTGCCGAGCTTTCCGCGACGGCCGCTCCGAGGACTTCCGCAGGACCCGCAACAGCGCAGAGGCTATTATTCATG 331
||||.||||||||||||||||||||.|.|||||||||.||.|||||||||||||||||||||||||||||||||
Sbjct 288 TTGCTGAGCTTTCCGCGACGGCCGCCCTGAGGACTTCTGCCGGACCCGCAACAGCGCAGAGGCTATTATTCATG 361
Query 332 GACTATCCAGTCTAACAGCTTGCCAGTTGAGAACGATATACATATGTCAGTTTTTGACAAGAATTGCAGCAGGA 405
|||||||||||||||||||||.||||||||||||.||||.|||||||||||||||||||||.||||||||||||
Sbjct 362 GACTATCCAGTCTAACAGCTTACCAGTTGAGAACAATATGCATATGTCAGTTTTTGACAAGCATTGCAGCAGGA 435
Query 406 AAAACCCTTGATGCACAGTTTGAAAATGATGAACGAATTACACCCTTGGAATCAGCCCTGATGATTTGGGGTTC 479
|||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 AAAACCCTTGATGTACAGTTTGAAAATGATGAACGAATTACACCCTTGGAATCAGCCCTGATGATTTGGGGTTC 509
Query 480 AATTGAAAAGGAACATGACAAACTTCATGAAGAAATACAGAATTTAATTAAAATTCAGGCTATAGCTGTTTGTA 553
|||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 510 AATTGAAAAGGAACATGACAAACTTCATGAAGAAATATAGAATTTAATTAAAATTCAGGCTATAGCTGTTTGTA 583
Query 554 TGGAAAATGGCAACTTTAAAGAAGCAGAAGAAGTCTTTGAAAGAATATTTGGTGATCCAAATTCTCATATGCCT 627
|||||||||.||||||||.||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 584 TGGAAAATGACAACTTTACAGAAGCAGAAGAAGTCTTTGAAAGAATATTTGGTGATCCAAATTCTTATATGCCT 657
Query 628 TTCAAAAGCAAATTGCTTATGATAATCTCTCAGAAAGATACATTTCATTCCTTTTTTCAACACTTCAGCTACAA 701
.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTCAAAAGCAAATTGCTTATGATAATCTCTCAGAAAGATACATTTCATTCCTTTTTTCAACACTTCAGCTACAA 731
Query 702 CCACATGATGGAGAAAATTAAGAGTTATGTGAATTATGTGCTAAGTGAAAAATCATCAACCTTTCTAATGAAGG 775
.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TCACATGATGGAGAAAATTAAGAGTTATGTGAATTATGTGCTAAGTGAAAAATCATCAACCTTTCTAATGAAGG 805
Query 776 CAGCGGCAAAAGTAGTAGAAAGCAAAAGGACAAGAACAATAACTTCTCAAGATAAACCTAGTGGTAATGATGTT 849
||||.|||||||||||||||||.|||||.|||||||||||||.|||||||||||||||||.|||||||||||||
Sbjct 806 CAGCAGCAAAAGTAGTAGAAAGTAAAAGAACAAGAACAATAATTTCTCAAGATAAACCTAATGGTAATGATGTT 879
Query 850 GAAATGGAAACTGAAGCTAATTTGGATACAAGAAAAAGGTCTCACAAGAATCTTTTCTTATCTAAGTTGCAACA 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GAAATGGAAACTGAAGCTAATTTGGATACAAGAAAAAGGTCTCACAAGAATCTTTTCTTATCTAAGTTGCAACA 953
Query 924 TGGAACCCAGCAACAAGACCTTAATAAGAAAGAAAGAAGAGTAGGAACTCCTCAAAGTACAAAAAAGAAAAAAG 997
||||||||||||||||||||||||||||||||||||.|||||||||||||.|||||||||||||||||||||||
Sbjct 954 TGGAACCCAGCAACAAGACCTTAATAAGAAAGAAAGGAGAGTAGGAACTCTTCAAAGTACAAAAAAGAAAAAAG 1027
Query 998 AAAGCAGAAGAGCCACTGAAAGCAGAATACCTGTTTCAAAGAGTCAGCCGGTAACTCCTGAAAAACATCGAGCT 1071
||||||||||||||||||||||||||||||||.|||||||||||||.|.||||||||||||||||||||.||||
Sbjct 1028 AAAGCAGAAGAGCCACTGAAAGCAGAATACCTATTTCAAAGAGTCAACTGGTAACTCCTGAAAAACATCAAGCT 1101
Query 1072 AGAAAAAGACAGGCATGGCTTTGGGAAGAAGACAAGAATTTGAGATCTGGCGTGAGGAAATATGGAGAGGGAAA 1145
|.|||||.|||.||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1102 AAAAAAAAACAAGCATGGCTTTGGGAAGAAGACAAGAATTTGAGATCTGGCGTGAGGAAACATGGAGAGGGAAA 1175
Query 1146 CTGGTCTAAAATACTGTTGCATTATAAATTCAACAACCGGACAAGTGTCATGTTAAAAGACAGATGGAGGACCA 1219
|||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 1176 CTGGTCTAAAATACTATTGCATTATAAATTCAACAACCGGACAAGTGTCATATTAAAAGACAGATGGAGGACCA 1249
Query 1220 TGAAGAAACTAAAACTGATTTCCTCAGACAGCGAAGAC------------------------------------ 1257
|||||||||||||||||||||.|||||||||.||||||
Sbjct 1250 TGAAGAAACTAAAACTGATTTGCTCAGACAGTGAAGACTGATTGTGTTTGTAAAAGCTTGATGAAAGGACAGTT 1323
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 1324 AAGTATTTTGATCACTGCATTTTGTTTGAAACTTGTGTCATTGATGTATTTTAAAACTTTTGTTTAAACCATTA 1397
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 1398 CAGTATTTTTCTGTGACCATCAATTAATATGTGGGTTTGTGCTATAAGAGTTAAAGCATATGCTATCATTGTAT 1471
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 1472 TCTTTAAGAACTTTATTTTGATAAAATGTAAATTTGTTGAACCCTGCCACATTTAGTATCCCCACCACCAAATC 1545
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 1546 CTGTTTCAATGAAAAAATTAAAACCTGATACAAAAAAAAAAATTTTCAGTTAACCTATTTTGTGTCTGTAGGCT 1619
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 1620 GACCTCAACCCTGTAACATAACCCATTAAAATGAATTTTTTTTTTAAGACAGAGTTTCTCTCTGTCGCCCAGGC 1693
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 1694 TGGAGTGCAATGGCGCAATTTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCC 1767
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 1768 TCCTGAGTAGCTGGGATTACAGGCACACACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGGCGGGGTT 1841
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 1842 TCACCATGCTGGTCAGGATGGTCTCGAACTCCTGACTTCATGATCCACCCACCTCAGCCTCCCAAAGTGCTGAG 1915
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 1916 ATTACAGACGTGAGCCACTGAGTCCTGCCTAAAATGAATTTTCTAGATGATTGAATAACAGTAGTCCTTTGATA 1989
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 1990 GGAGATAATGATTTGGTTTATGGCCTTAATATACTACATAATTATTTAAGATGTTTATTAATAGAATGATAAAT 2063
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 2064 GTACAGAGTGACCTATAAGCATGACATACTTTTGCTTTCAGTAGTTTCATGTAAAGAAAAAAATTTGAAAATAG 2137
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 2138 TAATACCTGAGGACCCATGGGAATAATAGACACTGGGGAGGTAGGTTGGGGAGCGGGAGCAAGAGCTGAAAAAC 2211
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 2212 TACCTACTGGGGACTCTGCTCACTACCTGGGTGACAGGATCATCCATACCCCAAACCTCAACATCACACAGTAT 2285
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 2286 ACCCAGCTAACAGACCTGCCCATGTGTTCCCTGAATCTAAAATAAAAATCAAAAATTTTTTTAAAAAAGAAAAA 2359
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 2360 GACAATAGTATTACCCATGGGACAAAATTTGTATTATTAGCAAGAATCATTTTGTGTCTCATTTAGAAACAATT 2433
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 2434 TGACTTTTGCTCCAGTGTTTAAACTTTGACAAAAATGGTTTTGAATAGATCTTTATAACCTGATGCCATAAATA 2507
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 2508 CAAGATTCTCTGATACCTTCATTTAACATATCAATATTGGGCCTAAAACAGTATTCTGTAAAGCTTAAATTGGT 2581
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 2582 ATTAACTATGATCATCTTCATGTCTGTGATAGATAATAAACAAGGTCATACATACCTTACTAAACAATTTTGGT 2655
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 2656 TTTTCACCAACATTTTATTCTTTAAAAGATTTAGACTAACAGAATTATTTAGGATTTCGAGTCATGTGCTTTAT 2729
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 2730 TTAGCAAGTGAGTAAAAATATTGGAAGATTGAAGTATTTGCATAAAAAATCAAATGGTAGTGTTTTGTAATCTC 2803
Query 1258 -------------------------------------------------------------------------- 1257
Sbjct 2804 TATTGTATTTCCTATTAAGGTTTCATATATTACTTTCCCATTGTTCCTGAATTTGTTATCCTGTATATAAACAG 2877
Query 1258 -------------- 1257
Sbjct 2878 AAACATGGATGAGT 2891
