Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01697
- Subject:
- NR_105033.2
- Aligned Length:
- 4564
- Identities:
- 548
- Gaps:
- 4014
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTGTCTGATGTTTGCCTGAACTGTTTGTACCTCTGGGCCATATTGCAGAACCCTGCCCTTCTTTGTTGACTGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAAAGCTCGCTCCCTGCCCAGGTTTTTCATTGTTGATCGAAATTAACACCAGGTGGTGAATAGAGCCCCTCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAGGTTGCTCAGGATAAATCATTTATTAAATAGGTCTGCTTATCAGGAGGGGCGTGAAGGCTCCCAAAAGGAAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCTGGCACCTGGGCCCAGAAGCCAGGGCCTCTAACTCCTGGGGTTGATTTCTTCAGTGAAGTTGCACCCTACA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAGGGAATATGGCCAAAGCGGCACTCAACTGAAGGCTGATATCAGGCGATTAGACAGCCATGCATTCTGCGTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTCTGGAATGGATTGTAGAGAGATGGACTTATATGAGGACTACCAGTCCCCGTTTGATTTTGATGCAGGAGTGA 444
Query 1 ---------------------------ATGG------------ACCGCGG-------------CGAGCAA---G 19
.||| ||| ||| | ||.|| |
Sbjct 445 ACAAAAGCTATCTCTACTTGTCTCCTAGTGGAAATTCATCTCCACC-CGGATCACCTACTCTTC-AGAAATTTG 516
Query 20 GTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGCCACAGAGACCCTC 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 GTCTGCTGAGAACAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGCCACAGAGACCCTC 590
Query 94 TCGGAAGAGGAGCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGT 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TCGGAAGAGGAGCAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGT 664
Query 168 GTTAGCAGCAAAAGAGAAGCATCTAGCAGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAAC 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GTTAGCAGCAAAAGAGAAGCATCTAGCAGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAAC 738
Query 242 AGAACATTGCCAAAGGGTGGCAAGACGTGACAGCAACATCTGC------------------------------- 284
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AGAACATTGCCAAAGGGTGGCAAGACGTGACAGCAACATCTGCGAGGAGCAAGCTTCTAGCAGCAGAAACCGAA 812
Query 285 ---------------------------------------TTACAAGAAGACATCTGAAACCTTATCCCAGGCTG 319
|||||||||||||||||||||||||||||||||||
Sbjct 813 CTGCTCTGTCTTCTGTATTGAGAGCCATCTGCAGAGCTGTTACAAGAAGACATCTGAAACCTTATCCCAGGCTG 886
Query 320 GACAGAAGGCCTCAGCTGCTTTTTCGTCTGTTGGCTCAGTCATCACCAAAAAGCTGGAAGATGTAAA------- 386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GACAGAAGGCCTCAGCTGCTTTTTCGTCTGTTGGCTCAGTCATCACCAAAAAGCTGGAAGATGTAAAATTGCAA 960
Query 387 --------------------------------------------------------------AAACTCCCCAAC 398
||||||||||||
Sbjct 961 GCCTTTTCACATTCCTTTAGTATACGTTCCATTCAGCATTCAATTAGCATGCCTGCTATGAGAAACTCCCCAAC 1034
Query 399 TTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGTCTAAAGTAGGGGGAACCAAGCCTGCTGGTGGTGATT 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 TTTTAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGTCTAAAGTAGGGGGAACCAAGCCTGCTGGTGGTGATT 1108
Query 473 TTGGAGAAGTCTTGAATTCGGCTGCAAATGCTAGTGCCACCACCACGGAGCCTCTTCCAGAAAAGACACAGGAG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 TTGGAGAAGTCTTGAATTCGGCTGCAAATGCTAGTGCCACCACCACGGAGCCTCTTCCAGAAAAGACACAGGAG 1182
Query 547 AGCCTG-------------------------------------------------------------------- 552
||||||
Sbjct 1183 AGCCTGTGAGATTCCTACCTTTGTTCTGCTACCCACTGCCAGATGCTGCAAGCGAGGTCCAAGCACATCTTGTC 1256
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1257 AACATGCATTGCCATGAATTTCTACCAGATGTGCTTTTATTTAGCTTTACATATTCCTTTGACCAAATAGTTTG 1330
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1331 TGGGTTAAACAAAATGAAAATATCTTCACCTCTATTCTTGGGAAACACCCTTTAGTGTACATTTATGTTCCTTT 1404
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1405 ATTTAGGAAACACCATTATAAAAACACTTATAGTAAATGGGGACATTCACTATAATGATCTAAGAAGCTACAGA 1478
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1479 TTGTCATAGTTGTTTTCCTGCTTTACAAAATTGCTCCAGATCTGGAATGCCAGTTTGACCTTTGTCTTCTATAA 1552
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1553 TATTTCCTTTTTTTCCCCTCTTTGAATCTCTGTATATTTGATTCTTAACTAAAATTGTTCTCTTAAATATTCTG 1626
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1627 AATCCTGGTAATTAAAAGTTTGGGTGTATTTTCTTTACCTCCAAGGAAAGAACTACTAGCTACAAAAAATATTT 1700
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1701 TGGAATAAGCATTGTTTTGGTATAAGGTACATATTTTGGTTGAAGACACCAGACTGAAGTAAACAGCTGTGCAT 1774
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1775 CCAATTTATTATAGTTTTGTAAGTAACAATATGTAATCAAACTTCTAGGTGACTTGAGAGTGGAACCTCCTATA 1848
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1849 TCATTATTTAGCACCGTTTGTGACAGTAACCATTTCAGTGTATTGTTTATTATACCACTTATATCAACTTATTT 1922
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1923 TTCACCAGGTTAAAATTTTAATTTCTACAAAATAACATTCTGAATCAAGCACACTGTATGTTCAGTAGGTTGAA 1996
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1997 CTATGAACACTGTCATCAATGTTCAGTTCAAAAGCCTGAAAGTTTAGATCTAGAAGCTGGTAAAAATGACAATA 2070
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2071 TCAATCACATTAGGGGAACCATTGTTGTCTTCACTTAATCCATTTAGCACTATTTAAAATAAGCACACCAAGTT 2144
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2145 ATATGACTAATATAACTTGAAAATTTTTTATACTGAGGGGTTGGTGATAACTCTTGAGGATGTAATGCATTAAT 2218
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2219 AAAAATCAACTCATCATTTTCTACTTGTTTTCAATGTGTTGGAAACTGTAAAATGATACTGTAGAACCTGTCTC 2292
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2293 CTACTTTGAAAACTGAATGTCAGGGCTGAGTGAATCAAAGTGTCTAGACATATTTGCATAGAGGCCAAGGTATT 2366
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2367 CTATTCTAATAACTGCTTACTCAACACTACCACCTTTTCCTTATACTGTATATGATTATGGCCTACAATGTTGT 2440
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2441 ATTTGTTATTTATTAAATTGTGATTGTTTTATTATTGTTTATGCCAAATGTTAACTGCCAAGCTTGGAGTGACC 2514
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2515 TAAAGCATTTTTTAAAAGCATGGCTAGATTTACTTCAGTATAAATTATCTTATGAAAACCAAATTTTAAAAGCC 2588
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2589 ACAGGTGTTGATTGTTATAAAATAACATGCTGCCATTCTTGATTGCTAGAGTTTTTGTTAGTACTTTGGATGCA 2662
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2663 ATTAAAACTATGTGCTATCACATGTGAAAAGCTTAATAAATTCCATCTATCAGTAGTATAGGTCTCAATATTTA 2736
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2737 TTATGAGACCAGTGGTCTGGAAACAGCTTGTTGTACCGAATCAACTGGAGTCTATGCTTAAAAAAAAAAAATTT 2810
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2811 TTTTTTAACCATCCTTAAATTATTGCTTAATGGTATCATATTAACATATTCTAAATAAGGGCTTTAAGGCACAG 2884
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2885 GCTGTTGAAGCATTTTCTCAGAGGAGTGGATCTGTAGAAGTCTGTCTTTCTATAGAAATATTGTGCTTACTCAA 2958
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2959 GTGTTAAATTATTTTTTCTATGAACTAGTCTACTTCTTAAAATTCAAACATATTCTTTTGATCACATTGTTTCT 3032
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3033 TGAGCATCCTGCCCTGCTACTAACTTTTCAACAAGGCAAAATGGAGTAAAGTGGCAATTTCTTTAGATGAGTGA 3106
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3107 AATACCCTCAAGTCTCTTTTCTGCCCAAAAAGGGAAAAGTGATAGAAATGGGGGTGGCAAGTGGGGTGAGTGGA 3180
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3181 TGAAGGTGGGTATTGGGGGTGGCTGTGAAAGAAAATAATGGAGAATCACTTTTCTAGACATCTACCTATACTTA 3254
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3255 ATCTAAGAAACAAAGTAATCTACTGTAAAGTACTCTGCCCCTTGAAAGAAGTATTAAAAAGAGTGAGGATGGAT 3328
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3329 TTAGAAAAAAACATGAATTTAGAAATATTCAAAATGGTTTTTGTGGCAGATTCAATATTATGAATTCACAGATA 3402
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3403 TTTAAAGAATGAGAAACATAGTAATTAGTAGAAATGCCAGAAACAGTTCCTGGTTCCTCTTGTGTTTGACACTA 3476
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3477 AGAAAATAGCAAGAGTGTGAAATCTCAGATACTTATGAAATCTCACAGATGTAAGGACTCAAGTGTAGAAGAAA 3550
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3551 ATATCCCCTTCTTACAAAAAGAAATGTCAATTTATGGAGTTTGTGGGAAATAGGGCAAGAATTCTTATGCTTAT 3624
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3625 GAGAGCCAAGTAGTCAGTGGAAGAGAGTAGAGCTCAAAACTGGATTATCACCTTAGCAACTTAGAATAGTTTGA 3698
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3699 AATAGAAAAAAAGTATTTAATTTGGATCTGGATCTGTTAAGATATGCACAGTCTATTTTTTGTATAGTATTGGA 3772
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3773 AAATAAAAATGCTATAATTTGGGTATGGGTTCTTTTGTATACATTACCTGCCCATTGAGGAAAGGGGCAAGTCC 3846
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3847 ATTATGCAACTTCTCTCCAAACCCTTCATATTCTGGATATGATACTTAAAGAGCCATGAGCAGCTACATTCTGC 3920
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3921 CTATCAGAAGGCATTTATTAAATGACTGCTTGCTGAAGATGTGTCCAAAGAGATCCTACATTAAGGTCATTTGT 3994
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3995 CAGAATGATGTTTGTGTTTGTTTAGAGTTGGCTGACCTCCAACTCCTGGGGTCAAGGAATCCTACTGCCTTAGC 4068
Query 553 -------------------------------------------------------------------------- 552
Sbjct 4069 TTCCCAAATAGCTAGGACTATAGGCATGCACCCGGCCATGTGTTTTATTTATAGCTCTTAAAGCCCAGATGAAG 4142
Query 553 -------------------------------------------------------------------------- 552
Sbjct 4143 AAATCACATTTTTGCCCATAGTGAAGAAACATTTGGCCATTGATTAGTCCTTATTTTCAGTGACTGTCCTGTTT 4216
Query 553 -------------------------------------------------------------------------- 552
Sbjct 4217 TCATTAGATTAGAGAGACCCTGTGTGGGCCACAGTTAATATAAACCATTATCACTTTTAAGTAAACCTGCACAT 4290
Query 553 -------------------------------------------------------------------------- 552
Sbjct 4291 CTTAGATTTCATAATTTCCTTATTGTTCTGACTCAAAATGAACTAAGAGCTTTTCACTTTTTGTTTGTAAGTTC 4364
Query 553 -------------------------------------------------------------------------- 552
Sbjct 4365 TCAGAGAGTCGGGTCTGCAAGTGCTTTTGCCTGCCAGGATTTTGTACTCAAATAAATGCTATTTGGCAACTAAA 4438
Query 553 -------------------------------------------------------------------------- 552
Sbjct 4439 ATTCTTGCCAGCTCTCATGTAATTTTGATGTTACTGAGGTTGGTTGGTAGTTTATTTTATTAATTTTGTGGTTC 4512
Query 553 -------------------------------------------------- 552
Sbjct 4513 TTCTATCATATAGAAAAAGCCAAATACAGTTTTGTTTGAATATTTGTAAA 4562
