Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01697
- Subject:
- NR_105035.2
- Aligned Length:
- 4117
- Identities:
- 552
- Gaps:
- 3565
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GACTTCGCGGGAGTCGCCGGCGGAGGCGAGGAGGAGCTCTGCGCGGCGCGGCGGGCGATCCGAGCCGGGACGGG 74
Query 1 -----------------------------------------------ATGGACCGCGGCGAGCAAG-------- 19
|||||||||||||||||||
Sbjct 75 CTGCAGGCGGGGGTGCTGCAGAGGACACGAGGCGGCGGGCTGGAGACATGGACCGCGGCGAGCAAGCTTTTTAT 148
Query 20 --------------------------------------------------------------GTCTGCTGAGAA 31
||||||||||||
Sbjct 149 TTCATCTGGAATTTCTGGCTTGAATTAGGGAAAGATTTATCTTTTCTCCACTCATATAAAATGTCTGCTGAGAA 222
Query 32 CAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGCCACAGAGACCCTCTCGGAAGAGGAG 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CAGACCCAGTCCCTGAGGAAGGAGAAGATGTTGCTGCCACGATCAGTGCCACAGAGACCCTCTCGGAAGAGGAG 296
Query 106 CAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGTGTTAGCAGCAAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAGGAAGAGCTAAGAAGAGAACTTGCAAAGGTAGAAGAAGAAATCCAGACTCTGTCTCAAGTGTTAGCAGCAAA 370
Query 180 AGAGAAGCATCTAGCAGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCA 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGAGAAGCATCTAGCAGAGATCAAGCGGAAACTTGGAATCAATTCTCTACAGGAACTAAAACAGAACATTGCCA 444
Query 254 AAGGGTGGCAAGACGTGACAGCAACATCTGCTTACAAGAAGACATCTGAAACCTTATCCCAGGCTGGACAGAAG 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAGGGTGGCAAGACGTGACAGCAACATCTGCTTACAAGAAGACATCTGAAACCTTATCCCAGGCTGGACAGAAG 518
Query 328 GCCTCAGCTGCTTTTTCGTCTGTTGGCTCAGTCATCACCAAAAAGCTGGAAGATGTAAAAAACTCCCCAACTTT 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCCTCAGCTGCTTTTTCGTCTGTTGGCTCAGTCATCACCAAAAAGCTGGAAGATGTAAAAAACTCCCCAACTTT 592
Query 402 TAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGTCTAAAGTAGGGGGAACCAAGCCTGCTGGTGGTGATTTTG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TAAATCATTTGAAGAAAAGGTCGAAAACTTAAAGTCTAAAGTAGGGGGAACCAAGCCTGCTGGTGGTGATTTTG 666
Query 476 GAGAAGTCTTGAATTCGGCTGCAAATGCTAGTGCCACCACCACGGAGCCTCTTCCAGAAAAGACACAGGAGAGC 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAGAAGTCTTGAATTCGGCTGCAAATGCTAGTGCCACCACCACGGAGCCTCTTCCAGAAAAGACACAGGAGAGC 740
Query 550 CTG----------------------------------------------------------------------- 552
|||
Sbjct 741 CTGTGAGATTCCTACCTTTGTTCTGCTACCCACTGCCAGATGCTGCAAGCGAGGTCCAAGCACATCTTGTCAAC 814
Query 553 -------------------------------------------------------------------------- 552
Sbjct 815 ATGCATTGCCATGAATTTCTACCAGATGTGCTTTTATTTAGCTTTACATATTCCTTTGACCAAATAGTTTGTGG 888
Query 553 -------------------------------------------------------------------------- 552
Sbjct 889 GTTAAACAAAATGAAAATATCTTCACCTCTATTCTTGGGAAACACCCTTTAGTGTACATTTATGTTCCTTTATT 962
Query 553 -------------------------------------------------------------------------- 552
Sbjct 963 TAGGAAACACCATTATAAAAACACTTATAGTAAATGGGGACATTCACTATAATGATCTAAGAAGCTACAGATTG 1036
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1037 TCATAGTTGTTTTCCTGCTTTACAAAATTGCTCCAGATCTGGAATGCCAGTTTGACCTTTGTCTTCTATAATAT 1110
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1111 TTCCTTTTTTTCCCCTCTTTGAATCTCTGTATATTTGATTCTTAACTAAAATTGTTCTCTTAAATATTCTGAAT 1184
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1185 CCTGGTAATTAAAAGTTTGGGTGTATTTTCTTTACCTCCAAGGAAAGAACTACTAGCTACAAAAAATATTTTGG 1258
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1259 AATAAGCATTGTTTTGGTATAAGGTACATATTTTGGTTGAAGACACCAGACTGAAGTAAACAGCTGTGCATCCA 1332
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1333 ATTTATTATAGTTTTGTAAGTAACAATATGTAATCAAACTTCTAGGTGACTTGAGAGTGGAACCTCCTATATCA 1406
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1407 TTATTTAGCACCGTTTGTGACAGTAACCATTTCAGTGTATTGTTTATTATACCACTTATATCAACTTATTTTTC 1480
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1481 ACCAGGTTAAAATTTTAATTTCTACAAAATAACATTCTGAATCAAGCACACTGTATGTTCAGTAGGTTGAACTA 1554
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1555 TGAACACTGTCATCAATGTTCAGTTCAAAAGCCTGAAAGTTTAGATCTAGAAGCTGGTAAAAATGACAATATCA 1628
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1629 ATCACATTAGGGGAACCATTGTTGTCTTCACTTAATCCATTTAGCACTATTTAAAATAAGCACACCAAGTTATA 1702
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1703 TGACTAATATAACTTGAAAATTTTTTATACTGAGGGGTTGGTGATAACTCTTGAGGATGTAATGCATTAATAAA 1776
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1777 AATCAACTCATCATTTTCTACTTGTTTTCAATGTGTTGGAAACTGTAAAATGATACTGTAGAACCTGTCTCCTA 1850
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1851 CTTTGAAAACTGAATGTCAGGGCTGAGTGAATCAAAGTGTCTAGACATATTTGCATAGAGGCCAAGGTATTCTA 1924
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1925 TTCTAATAACTGCTTACTCAACACTACCACCTTTTCCTTATACTGTATATGATTATGGCCTACAATGTTGTATT 1998
Query 553 -------------------------------------------------------------------------- 552
Sbjct 1999 TGTTATTTATTAAATTGTGATTGTTTTATTATTGTTTATGCCAAATGTTAACTGCCAAGCTTGGAGTGACCTAA 2072
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2073 AGCATTTTTTAAAAGCATGGCTAGATTTACTTCAGTATAAATTATCTTATGAAAACCAAATTTTAAAAGCCACA 2146
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2147 GGTGTTGATTGTTATAAAATAACATGCTGCCATTCTTGATTGCTAGAGTTTTTGTTAGTACTTTGGATGCAATT 2220
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2221 AAAACTATGTGCTATCACATGTGAAAAGCTTAATAAATTCCATCTATCAGTAGTATAGGTCTCAATATTTATTA 2294
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2295 TGAGACCAGTGGTCTGGAAACAGCTTGTTGTACCGAATCAACTGGAGTCTATGCTTAAAAAAAAAAAATTTTTT 2368
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2369 TTTAACCATCCTTAAATTATTGCTTAATGGTATCATATTAACATATTCTAAATAAGGGCTTTAAGGCACAGGCT 2442
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2443 GTTGAAGCATTTTCTCAGAGGAGTGGATCTGTAGAAGTCTGTCTTTCTATAGAAATATTGTGCTTACTCAAGTG 2516
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2517 TTAAATTATTTTTTCTATGAACTAGTCTACTTCTTAAAATTCAAACATATTCTTTTGATCACATTGTTTCTTGA 2590
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2591 GCATCCTGCCCTGCTACTAACTTTTCAACAAGGCAAAATGGAGTAAAGTGGCAATTTCTTTAGATGAGTGAAAT 2664
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2665 ACCCTCAAGTCTCTTTTCTGCCCAAAAAGGGAAAAGTGATAGAAATGGGGGTGGCAAGTGGGGTGAGTGGATGA 2738
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2739 AGGTGGGTATTGGGGGTGGCTGTGAAAGAAAATAATGGAGAATCACTTTTCTAGACATCTACCTATACTTAATC 2812
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2813 TAAGAAACAAAGTAATCTACTGTAAAGTACTCTGCCCCTTGAAAGAAGTATTAAAAAGAGTGAGGATGGATTTA 2886
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2887 GAAAAAAACATGAATTTAGAAATATTCAAAATGGTTTTTGTGGCAGATTCAATATTATGAATTCACAGATATTT 2960
Query 553 -------------------------------------------------------------------------- 552
Sbjct 2961 AAAGAATGAGAAACATAGTAATTAGTAGAAATGCCAGAAACAGTTCCTGGTTCCTCTTGTGTTTGACACTAAGA 3034
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3035 AAATAGCAAGAGTGTGAAATCTCAGATACTTATGAAATCTCACAGATGTAAGGACTCAAGTGTAGAAGAAAATA 3108
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3109 TCCCCTTCTTACAAAAAGAAATGTCAATTTATGGAGTTTGTGGGAAATAGGGCAAGAATTCTTATGCTTATGAG 3182
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3183 AGCCAAGTAGTCAGTGGAAGAGAGTAGAGCTCAAAACTGGATTATCACCTTAGCAACTTAGAATAGTTTGAAAT 3256
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3257 AGAAAAAAAGTATTTAATTTGGATCTGGATCTGTTAAGATATGCACAGTCTATTTTTTGTATAGTATTGGAAAA 3330
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3331 TAAAAATGCTATAATTTGGGTATGGGTTCTTTTGTATACATTACCTGCCCATTGAGGAAAGGGGCAAGTCCATT 3404
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3405 ATGCAACTTCTCTCCAAACCCTTCATATTCTGGATATGATACTTAAAGAGCCATGAGCAGCTACATTCTGCCTA 3478
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3479 TCAGAAGGCATTTATTAAATGACTGCTTGCTGAAGATGTGTCCAAAGAGATCCTACATTAAGGTCATTTGTCAG 3552
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3553 AATGATGTTTGTGTTTGTTTAGAGTTGGCTGACCTCCAACTCCTGGGGTCAAGGAATCCTACTGCCTTAGCTTC 3626
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3627 CCAAATAGCTAGGACTATAGGCATGCACCCGGCCATGTGTTTTATTTATAGCTCTTAAAGCCCAGATGAAGAAA 3700
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3701 TCACATTTTTGCCCATAGTGAAGAAACATTTGGCCATTGATTAGTCCTTATTTTCAGTGACTGTCCTGTTTTCA 3774
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3775 TTAGATTAGAGAGACCCTGTGTGGGCCACAGTTAATATAAACCATTATCACTTTTAAGTAAACCTGCACATCTT 3848
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3849 AGATTTCATAATTTCCTTATTGTTCTGACTCAAAATGAACTAAGAGCTTTTCACTTTTTGTTTGTAAGTTCTCA 3922
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3923 GAGAGTCGGGTCTGCAAGTGCTTTTGCCTGCCAGGATTTTGTACTCAAATAAATGCTATTTGGCAACTAAAATT 3996
Query 553 -------------------------------------------------------------------------- 552
Sbjct 3997 CTTGCCAGCTCTCATGTAATTTTGATGTTACTGAGGTTGGTTGGTAGTTTATTTTATTAATTTTGTGGTTCTTC 4070
Query 553 ----------------------------------------------- 552
Sbjct 4071 TATCATATAGAAAAAGCCAAATACAGTTTTGTTTGAATATTTGTAAA 4117
