Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01718
- Subject:
- NR_028395.1
- Aligned Length:
- 3493
- Identities:
- 760
- Gaps:
- 2662
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACGTGAGAGGAGACTTCCGGCCACTGCGTTGTAGTCGGCCCGGCTGCAAAGCGTTTTTCTGCAGGCTGTTTTCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGGTTCCCTCGGCCTGTACCTCGCGCACTCCTCTTGCTCCAGGTCCTTCAGTCTCCGCTCGTCTCACCGTAGG 148
Query 1 ----------ATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTGTGACGACATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC 222
Query 65 AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT 296
Query 139 GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT 370
Query 213 TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG 444
Query 287 GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT 518
Query 361 ACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTAT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTAT 592
Query 435 GGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAAC-------------- 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAACTAAGTTTACAGGCA 666
Query 495 ---TCC--CTC-------CTCT---GAT----GC--ACAGGATAAGC-----------AGTTTGGTACT-TGGA 535
||| ||| |||| ||| || |||| |||| |.|||..|||| |.||
Sbjct 667 AGATCCTACTCACAGAGGCTCTTGGGATCAAGGCTGACAG---AAGCTCCATCTGAAGACTTTTATACTATAGA 737
Query 536 GACTG----AGAG------------------------------------------------------------T 545
|.|.| |||| |
Sbjct 738 GGCAGAAAAAGAGTGATGAATCAAGCACTGGCTTCTAAAGCTTCCGCCCAGATGGGAAGCATATCTCCTCTGCT 811
Query 546 CACA----CCTGTCGA---------------------TTACCTTC--------TGGGA---------------G 571
|||| ||||.|.| |.|.|||| ||||| |
Sbjct 812 CACATTTCCCTGACCAAAGCCAGTCACATGGCCATCCTCAGCTTCAGAGAGGTTGGGAAGGCATTCCCACTATG 885
Query 572 TGGCTG----------ACT------TAACTGG-----AGAATT-------------------------GATGCG 599
||.||| ||| ||..||| .|.||| ||.|||
Sbjct 886 TGTCTGGATGCCAGCAACTCAGAAATATTTGGCAGCCGGGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCG 959
Query 600 G------------------------ATGTGTA--TTAACAGTG--TGGGGAATGGGGACATTGATACCCCCTTT 645
| |||.|.| |..||||.| |||| ||.||| || |||||
Sbjct 960 GCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGACAGGGCCTGGG--ATCGGG---TT-------CCTTT 1021
Query 646 -----GAAGTGAGC-CAGTTTTTACGTCAGGTT--TATGATGGGTTTTCATTCATTGG----------CAACAC 701
|.||||.|| ||.|.| ||.|||| .|.||.||||.| .||| ||.|||
Sbjct 1022 CCCCAGCAGTGGGCACACTGT-----TCCGGTTCCCAGGAGGGGTGT-------CTGGCGAGGAGTCCCACCAC 1083
Query 702 T-GGA---------------------CCTT---ACGAG----------------------GTTTCTAAGA---- 724
| ||| |||| .|||| |||||.||||
Sbjct 1084 TCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGTTTCCAAGAGTGC 1157
Query 725 AG---------CTGTATACCT---TGAAA----------CAAAGTTTGG---------CCAAAGTGG----AGA 763
|| |||| .|||| |||.| |..|.||||| |..|.|||| |||
Sbjct 1158 AGCAGCCCCTACTGT-GACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAGGTGGCACCAGA 1230
Query 764 ATGCTTG------TTA-----------TGCCTTGAAAGT-CAGAGGGTCAGAAATTCCAAAACATATGTTGGCA 819
.|||.|| ||| .|||.||..||| |.|.|.|.||| |||.| |||.|||
Sbjct 1231 TTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAG------CAAGA-----GTTTGCA 1293
Query 820 G--ATG---TGTTTT--------------CAGTT------AAAACAGAAATGATAGATCAAGAAG----AGGGC 864
| ||| .|||.| |||.| .|..|.|.|..|||.||.||||..| .||||
Sbjct 1294 GCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTCCGGGC 1367
Query 865 A------TTTCT-------------------------------------------------------------- 870
| |.|||
Sbjct 1368 AGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCCCCCAA 1441
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1442 CCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCGGGGAA 1515
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1516 CGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATGGGAGC 1589
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1590 CAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCGGCCCTTCAGTCTCTTGGCTACAC 1663
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1664 GGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTACCAGAC 1737
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1738 ATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGCTCAGG 1811
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1812 GGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAACCGGA 1885
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1886 GGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATGATTAT 1959
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1960 GATAAAGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCAACTTCC 2033
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2034 TTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCCGTGGGG 2107
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2108 CCACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCCACTGCT 2181
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2182 CAGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAAAGCAGCAGCTACAGAAAGAAAT 2255
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2256 CGAAGCTCTCCAAGCAAGGATGTTTGTGCTGGAAGCCAAAGATCAACAGCTGAGAAGGGAAATAGAGGAGCAAG 2329
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2330 AGCAGCAACTCCAGTGGCAGGGCTGCGACCTGACCCCACTGGTGGGCCAGCTGTCCCTGGGTCAGCTGCAGGAG 2403
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2404 GTCAGCAAGGCCTTGCAGGACACCCTGGCCTCAGCCGGTCAGATTCCCTTCCATGCAGAGCCACCGGAAACCAT 2477
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2478 AAGGAGCCTCCAGGAAAGAATAAAATCCCTCAACTTGTCACTTAAAGAAATCACTACTAAGGAAACCATTTCTG 2551
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2552 GACGGCTAAAGACCTCACCGAGGAGATTAGATCATTAACATCAGAGAGAGAAGGGCTGGAGGGACTCCTCAGCA 2625
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2626 AGCTGTTGGTGTTGAGTTCCAGGAATGTCAAAAAGCTGGGAAGTGTTAAAGAAGATTACAACAGACTGAGAAGA 2699
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2700 GAAGTGGAGCACCAGGAGACTGCCTATGGTAGGTAGTGCACAACTGTTCCCCGGCAAGATATTGATGATATTTG 2773
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2774 TTGTGTTTTGTGGCCAGGCAGAATGTTCTGTGCCTTATGTGAACGTCACTGTGAAGAGCGTCATGGAGCACATG 2847
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2848 GCCCTTTTCCTTGGGGACATTTTTGGCAGGTGCCTTGGCAAACCGAATGGAATTACTTGTCAGCTTTTGTTTTC 2921
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2922 ATATTCACATGTGACATCTTTTCTTTTTCTGTTCCCTGTCTCAACCTGTGTTTGCTAATAGCCTTGTTATTATT 2995
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2996 TAGAGCAGTCTCTCCCTTGGCAAGGTCTTGAGCATTTTCTTTGTGTGACAATTATCTTCCTTTTGTCCCTTGGC 3069
Query 871 -------------------------------------------------------------------------- 870
Sbjct 3070 TCCGTCTCCTTGTCTGCACAATCATAGACTAAATCAGGCTGATCTGAGAAAATTGAGGGAAGACCATAAAGTGG 3143
Query 871 -------------------------------------------------------------------------- 870
Sbjct 3144 CTCTTCTATGTGTGGACTTTTCTGAGAGCTTCTTTCCCCAGGAAGGATGATGTAGAAGATGTGAATGCCGCCTT 3217
Query 871 -------------------------------------------------------------------------- 870
Sbjct 3218 AGCCAAAGTGTCTGCTTGTCAGAGGAGTTCAAGTGTTCCTGTGTTCTTTCCTTTTCCAGTCGTTAGGAGTAACT 3291
Query 871 -------------------------------------------------------------------------- 870
Sbjct 3292 GAGCTTACTCTGAGATTTGCACCCAGAGGGATGGTCTCAGAAGACGCTGGTTCAGTGCAAATTGAGATGGTAAA 3365
Query 871 -------------------------------------------------------------------------- 870
Sbjct 3366 AACTTATTTCTTAAAAAATGGTTCCTAAATAAATGTCATTTACTAAAACAAATGAAAGAAATATATATATGAAT 3439
Query 871 --------------- 870
Sbjct 3440 AAATGGCTATATTTT 3454
