Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01718
- Subject:
- NR_028397.1
- Aligned Length:
- 3379
- Identities:
- 719
- Gaps:
- 2594
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACGTGAGAGGAGACTTCCGGCCACTGCGTTGTAGTCGGCCCGGCTGCAAAGCGTTTTTCTGCAGGCTGTTTTCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGGTTCCCTCGGCCTGTACCTCGCGCACTCCTCTTGCTCCAGGTCCTTCAGTCTCCGCTCGTCTCACCGTAGG 148
Query 1 ----------ATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTGTGACGACATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC 222
Query 65 AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT 296
Query 139 GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT 370
Query 213 TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG 444
Query 287 GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT 518
Query 361 ACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTAT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTAT 592
Query 435 GGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAACTCCCTCCTCTGATG 508
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 593 GGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAAC------------TG 654
Query 509 CA--CAGGATAAGCAGTTTGGTACTTGGAGACTGAGAGTCACACCTGTCGATTACCTTCTGGGA----GTGGCT 576
|| |.|||| |.||| || ||||||..|..|.|.||| ||| |.||||
Sbjct 655 CAGCCGGGAT-----------TGCTT----AC---------CACCTGCAGCGTGCTTTC--GGAGGCGGCGGCT 702
Query 577 GACTTAACTGGAGAATTGATGCGG------ATGTGTA--TTAACAGTG--TGGGGAATGGGGACATTGATACCC 640
|.| || |||| ||.| |||.|.| |..||||.| |||| ||.||| ||
Sbjct 703 GGC---AC-GGAG-------GCCGGGCTACATGAGAAGCTCGACAGGGCCTGGG--ATCGGG---TT------- 753
Query 641 CCTTT-----GAAGTGAGC-CAGTTTTTACGTCAGGTT--TATGATGGGTTTTCATTCATTGG----------C 696
||||| |.||||.|| ||.|.| ||.|||| .|.||.||||.| .||| |
Sbjct 754 CCTTTCCCCAGCAGTGGGCACACTGT-----TCCGGTTCCCAGGAGGGGTGT-------CTGGCGAGGAGTCCC 815
Query 697 AACACT-GGA---------------------CCTT---ACGAG----------------------GTTTCTAAG 723
|.|||| ||| |||| .|||| |||||.|||
Sbjct 816 ACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGTTTCCAAG 889
Query 724 A----AG---------CTGTATACCT---TGAAA----------CAAAGTTTGG---------CCAAAGTGG-- 760
| || |||| .|||| |||.| |..|.||||| |..|.||||
Sbjct 890 AGTGCAGCAGCCCCTACTGT-GACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAGGTGGCA 962
Query 761 --AGAATGCTTG------TTA-----------TGCCTTGAAAGT-CAGAGGGTCAGAAATTCCAAAACATATGT 814
|||.|||.|| ||| .|||.||..||| |.|.|.|.||| |||.| ||
Sbjct 963 CCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAG------CAAGA-----GT 1025
Query 815 TGGCAG--ATG---TGTTTT--------------CAGTT------AAAACAGAAATGATAGATCAAGAAG---- 859
|.|||| ||| .|||.| |||.| .|..|.|.|..|||.||.||||..|
Sbjct 1026 TTGCAGCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTC 1099
Query 860 AGGGCA------TTTCT--------------------------------------------------------- 870
.||||| |.|||
Sbjct 1100 CGGGCAGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCC 1173
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1174 CCCAACCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCG 1247
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1248 GGGAACGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATG 1321
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1322 GGAGCCAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCGGCCCTTCAGTCTCTTGGC 1395
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1396 TACACGGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTAC 1469
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1470 CAGACATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGC 1543
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1544 TCAGGGGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAA 1617
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1618 CCGGAGGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATG 1691
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1692 ATTATGATAAAGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCAA 1765
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1766 CTTCCTTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCCG 1839
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1840 TGGGGCCACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCCA 1913
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1914 CTGCTCAGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAAAGCAGCAGCTACAGAAA 1987
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1988 GAAATCGAAGCTCTCCAAGCAAGGATGTTTGTGCTGGAAGCCAAAGATCAACAGCTGAGAAGGGAAATAGAGGA 2061
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2062 GCAAGAGCAGCAACTCCAGTGGCAGGGCTGCGACCTGACCCCACTGGTGGGCCAGCTGTCCCTGGGTCAGCTGC 2135
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2136 AGGAGGTCAGCAAGGCCTTGCAGGACACCCTGGCCTCAGCCGGTCAGATTCCCTTCCATGCAGAGCCACCGGAA 2209
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2210 ACCATAAGGAGCCTCCAGGAAAGAATAAAATCCCTCAACTTGTCACTTAAAGAAATCACTACTAAGGTGTGTAT 2283
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2284 GAGTGAGAAATTCTGCAGCACCCTGAGGAAGAAAGTTAACGATATTGAAACCCAACTACCAGCCTTGCTTGAAG 2357
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2358 CCAAAATGCATGCCATATCAGGAAACCATTTCTGGACGGCTAAAGACCTCACCGAGGAGATTAGATCATTAACA 2431
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2432 TCAGAGAGAGAAGGGCTGGAGGGACTCCTCAGCAAGCTGTTGGTGTTGAGTTCCAGGAATGTCAAAAAGCTGGG 2505
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2506 AAGTGTTAAAGAAGATTACAACAGACTGAGAAGAGAAGTGGAGCACCAGGAGACTGCCTATGGTAGGTAGTGCA 2579
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2580 CAACTGTTCCCCGGCAAGATATTGATGATATTTGTTGTGTTTTGTGGCCAGGCAGAATGTTCTGTGCCTTATGT 2653
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2654 GAACGTCACTGTGAAGAGCGTCATGGAGCACATGGCCCTTTTCCTTGGGGACATTTTTGGCAGGTGCCTTGGCA 2727
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2728 AACCGAATGGAATTACTTGTCAGCTTTTGTTTTCATATTCACATGTGACATCTTTTCTTTTTCTGTTCCCTGTC 2801
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2802 TCAACCTGTGTTTGCTAATAGCCTTGTTATTATTTAGAGCAGTCTCTCCCTTGGCAAGGTCTTGAGCATTTTCT 2875
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2876 TTGTGTGACAATTATCTTCCTTTTGTCCCTTGGCTCCGTCTCCTTGTCTGCACAATCATAGACTAAATCAGGCT 2949
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2950 GATCTGAGAAAATTGAGGGAAGACCATAAAGTGGCTCTTCTATGTGTGGACTTTTCTGAGAGCTTCTTTCCCCA 3023
Query 871 -------------------------------------------------------------------------- 870
Sbjct 3024 GGAAGGATGATGTAGAAGATGTGAATGCCGCCTTAGCCAAAGTGTCTGCTTGTCAGAGGAGTTCAAGTGTTCCT 3097
Query 871 -------------------------------------------------------------------------- 870
Sbjct 3098 GTGTTCTTTCCTTTTCCAGTCGTTAGGAGTAACTGAGCTTACTCTGAGATTTGCACCCAGAGGGATGGTCTCAG 3171
Query 871 -------------------------------------------------------------------------- 870
Sbjct 3172 AAGACGCTGGTTCAGTGCAAATTGAGATGGTAAAAACTTATTTCTTAAAAAATGGTTCCTAAATAAATGTCATT 3245
Query 871 ------------------------------------------------- 870
Sbjct 3246 TACTAAAACAAATGAAAGAAATATATATATGAATAAATGGCTATATTTT 3294
