Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01718
- Subject:
- NR_028399.1
- Aligned Length:
- 2628
- Identities:
- 776
- Gaps:
- 1776
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACGTGAGAGGAGACTTCCGGCCACTGCGTTGTAGTCGGCCCGGCTGCAAAGCGTTTTTCTGCAGGCTGTTTTCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGGTTCCCTCGGCCTGTACCTCGCGCACTCCTCTTGCTCCAGGTCCTTCAGTCTCCGCTCGTCTCACCGTAGG 148
Query 1 ----------ATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTGTGACGACATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC 222
Query 65 AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT 296
Query 139 GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT 370
Query 213 TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG 444
Query 287 GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT 518
Query 361 ACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTAT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTAT 592
Query 435 GGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAAC-------------- 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAACTAAGTTTACAGGCA 666
Query 495 ---TCC--CTC-------CTCT---GAT----GC--ACAGGATAAGC-----------AGTTTGGTACT-TGGA 535
||| ||| |||| ||| || |||| |||| |.|||..|||| |.||
Sbjct 667 AGATCCTACTCACAGAGGCTCTTGGGATCAAGGCTGACAG---AAGCTCCATCTGAAGACTTTTATACTATAGA 737
Query 536 GACTG----AGAG------------------------------------------------------------T 545
|.|.| |||| |
Sbjct 738 GGCAGAAAAAGAGTGATGAATCAAGCACTGGCTTCTAAAGCTTCCGCCCAGATGGGAAGCATATCTCCTCTGCT 811
Query 546 CACA----CCTGTCGA---------------------TTACCTTC--------TGGGA---------------G 571
|||| ||||.|.| |.|.|||| ||||| |
Sbjct 812 CACATTTCCCTGACCAAAGCCAGTCACATGGCCATCCTCAGCTTCAGAGAGGTTGGGAAGGCATTCCCACTATG 885
Query 572 TGGCTG----------AC--------------------------------TTAACTG---------GAGA--AT 592
||.||| || |||||.| |||| ||
Sbjct 886 TGTCTGGATGCCAGCAACTCAGAAATATTTGCCTTACAGAGACCTCACCATTAACAGCATCTGCAAGAGAAGAT 959
Query 593 TGATGCGGATG-----TGTATTAACAGTG-------TGGGGAATGGGGAC-----------------------A 631
|.|.||..|.| |.||.|.||.||| ||.||||...|||| |
Sbjct 960 TAAAGCACACGATTACTTTACTCACTGTGTAACACATGAGGAACATGGACGAGATGGGAAAAAGGCAGCCGGGA 1033
Query 632 TTG-ATACCCCCTTTGAAGTGAGCCAGTTTTT-----------------ACGTCAGG------TTTATGA---- 677
||| .||||.|| ||.||.|.|| ||| ||| .||| |..||||
Sbjct 1034 TTGCTTACCACC--TGCAGCGTGC-----TTTCGGAGGCGGCGGCTGGCACG-GAGGCCGGGCTACATGAGAAG 1099
Query 678 ------------TGGGTT----TTCATT-------CATTGGCAACACTGGACC--TTAC-----GAGGTTTCT- 720
||||.| |||.|| ||.|||..||||||..|| ||.| |.|||.|||
Sbjct 1100 CTCGACAGGGCCTGGGATCGGGTTCCTTTCCCCAGCAGTGGGCACACTGTTCCGGTTCCCAGGAGGGGTGTCTG 1173
Query 721 --AAGAAG---------------------------CTGTAT-ACCTTGAAAC-AAAG----TTTGG-------- 751
.||.|| |.||.| .||||||..| |.|| .||||
Sbjct 1174 GCGAGGAGTCCCACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGC 1247
Query 752 -------CCAA-AGTGGAGAATGC-----TTGTTATGCCT---TGAAAG------------------------- 784
|||| ||||.||.| || .|||.| ||| |||.||
Sbjct 1248 CCTGTTTCCAAGAGTGCAGCA-GCCCCTACTGTGA--CCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCA 1318
Query 785 --TCAGAGG-GTCA-GAAATTCCAAAACA----TA--------TGT------------------TGGCAG-ATG 823
||||||| |.|| .|.|||.|...||| || ||| |||||| |.|
Sbjct 1319 GCTCAGAGGTGGCACCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAGCAAG 1392
Query 824 TGTTTTC----------AGTTAAAACAGA-------------------------------AATGATAGATCAAG 856
.||||.| |||| |.|| |..|||.||.||||
Sbjct 1393 AGTTTGCAGCCATGGATAGTT----CTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAG 1462
Query 857 AAG----AGGGCA------TTTCT-------------------------------------------------- 870
..| .||||| |.|||
Sbjct 1463 GCGTGTCCGGGCAGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTG 1536
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1537 AGGTCCCCCCAACCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGC 1610
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1611 TCTGCCGGGGAACGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCA 1684
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1685 GGAGATGGGAGCCAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCGGCCCTTCAGTC 1758
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1759 TCTTGGCTACACGGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCAT 1832
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1833 TCTTTACCAGACATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAG 1906
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1907 CAGCGGCTCAGGGGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGC 1980
Query 871 -------------------------------------------------------------------------- 870
Sbjct 1981 TGAGAAACCGGAGGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAG 2054
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2055 AATGATGATTATGATAAAGGTGAGTTTTAATTTGTTTATTGATTGTTTTGTCATCATGTCCCAATTTTCTTTCC 2128
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2129 ATCTTTACTCATATCTACCTTTTGAATCCCAAAAGAATTGTACAATCTGTTCCTCTGATCATCTCTACCAGGGA 2202
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2203 ATAGTTGACTCTTTTACAGCATTATTGTTTTGTAGATTTCAAAGTACTTCATGAACATTAATCCTTTGGGTTAT 2276
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2277 AAATATAACCTTATCAATTGTCCAGAAACACTTAGCATACTCACACAATAAAAATTATATTAGCTTGCCACCTG 2350
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2351 TCTGCCCATGGTGTGATGTATCTATAATCCACTTGTTCATAAAAAATATTCGTCTGACACCTATGATATGCTAG 2424
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2425 GGAATATGGGAGACAATAGGAAAGTAAGACAGACATGGTATCTGCCCTTGTGATGCCAGTAAACTTAAGCCTTC 2498
Query 871 -------------------------------------------------------------------------- 870
Sbjct 2499 ATGGGGCTCTCTGACTTCATAATTTCCAGAACCAGAGATAGGAAATGAGGTGAATTTGAGAAATGTCAGACTGT 2572
Query 871 -------------------------------------- 870
Sbjct 2573 GCCAAAGGGGGTCACATGCATCAAATTTCCACATACAT 2610
