Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01722
- Subject:
- XR_001780033.1
- Aligned Length:
- 2220
- Identities:
- 1209
- Gaps:
- 906
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTAGCTCTTCATGCCTTTCCAGGGAGGAAGCTGTGGACACACTGCAAAGTCAGGAAGGAACCGTCCCTGGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCGCCCCAGCGCGGAGACCACCGTGGACCTCCAGGGATGGAAGGCCGCTCTGGCCCCAAGCGGAGCCTCTCGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGGTAGACGGGCTCGAGGGAGTCCCTCTGGGCGCGGCGCCGCCGAGCGGCTCGATGCTCCGACCGGAAGTGCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TACACCGTCTGCCTCCCACCCGGCTCTCTGGTCCCGGCGGTAAGATGGCGGCTACCGCGGAGTGCGATGTGGTA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATGGCGGCGACCGAGCCTGAACTGCTGGAGGACGAAGACGCCAAGAGGGAAGCAGAATCCTTCAAGGAACAAGG 370
Query 1 ----------------------------------------------------------------ATGTGTCCTA 10
||||||||||
Sbjct 371 GAATGCATATTATGCTAAGAAGGACTACAACGAAGCTTATAACTATTACACAAAAGCCATAGATATGTGTCCTA 444
Query 11 AAAATGCTAGCTATTATGGTAATCGAGCAGCCACCTTGATGATGCTTGGAAGGTTCCGGGAAGCTCTTGGAGAT 84
|.|||||.||||||||.|||||||||||.|||||..||||||||||||||.|||||||||||||||||||||||
Sbjct 445 ACAATGCCAGCTATTACGGTAATCGAGCGGCCACACTGATGATGCTTGGACGGTTCCGGGAAGCTCTTGGAGAT 518
Query 85 GCACAACAGTCAGTGAGGTTGGATGACAGTTTTGTCCGGGGACATCTACGAGAGGGCAAGTGCCACCTCTCTCT 158
||.||.|||||.||||||||||||||||||||||||||||||||.||.|||||.|||||||||||||||||.||
Sbjct 519 GCGCAGCAGTCTGTGAGGTTGGATGACAGTTTTGTCCGGGGACACCTCCGAGAAGGCAAGTGCCACCTCTCACT 592
Query 159 GGGGAATGCCATGGCAGCATGTCGCAGCTTCCAGAGAGCCCTAGAACTGGATCATAAAAATGCTCAGGCACAAC 232
.||||||||.|||||.||||||||.||.|||||.|||||||||||||||||||||||||||||.||||||||.|
Sbjct 593 TGGGAATGCAATGGCGGCATGTCGTAGTTTCCAAAGAGCCCTAGAACTGGATCATAAAAATGCCCAGGCACAGC 666
Query 233 AAGAGTTCAAGAATGCTAATGCAGTCATGGAATATGAGAAAATAGCAGAAACAGATTTTGAGAAGCGAGATTTT 306
|.|||||||||||.||.|||||.||||||||.||||||||||||||||||...||||||||.|||||||||||.
Sbjct 667 AGGAGTTCAAGAACGCCAATGCCGTCATGGAGTATGAGAAAATAGCAGAAGTGGATTTTGAAAAGCGAGATTTC 740
Query 307 CGGAAGGTTGTTTTCTGCATGGACCGTGCCCTAGAATTTGCCCCTGCCTGCCATCGCTTCAAAATCCTCAAGGC 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||.||
Sbjct 741 CGGAAGGTTGTTTTCTGCATGGACCGTGCCCTAGAATTTGCCCCTGCCTGCCATCGATTCAAAATTCTCAAAGC 814
Query 381 AGAATGTTTAGCAATGCTGGGTCGTTATCCAGAAGCACAGTCTGTGGCTAGTGACATTCTACGAATGGATTCCA 454
||||||||||||||||||.|||||.||.|||||||||||||.||||||.|||||||||.|||||||||||||||
Sbjct 815 AGAATGTTTAGCAATGCTTGGTCGATACCCAGAAGCACAGTTTGTGGCCAGTGACATTTTACGAATGGATTCCA 888
Query 455 CCAATGCAGATGCTCTGTATGTACGAGGTCTTTGCCTTTATTACGAAGATTGTATTGAGAAGGCAGTTCAGTTT 528
|||||||.||||||||||||||.||.|||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 889 CCAATGCTGATGCTCTGTATGTCCGGGGTCTTTGCCTTTATTACGAAGATTGTATTGAGAAGGCAGTGCAGTTT 962
Query 529 TTCGTACAGGCTCTCAGGATGGCTCCTGACCACGAGAAGGCCTGCATTGCCTGCAGAAATGCCAAAGCACTCAA 602
||.||||||||||||||||||||||||||||||||||||||.||..|.||.||.||||||||||||||.||.||
Sbjct 963 TTTGTACAGGCTCTCAGGATGGCTCCTGACCACGAGAAGGCTTGTGTCGCTTGTAGAAATGCCAAAGCCCTTAA 1036
Query 603 AGCAAAGAAAGAAGATGGGAATAAAGCATTTAAGGAAGGAAATTACAAACTAGCATATGAACTGTACACAGAAG 676
|||.|||||.|||||||||||||||||.||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1037 AGCCAAGAAGGAAGATGGGAATAAAGCCTTTAAGGAAGGAAATTACAAGCTAGCATATGAACTGTACACAGAAG 1110
Query 677 CCCTGGGGATAGACCCCAACAATATAAAAACAAATGCTAAACTCTACTGTAATCGGGGTACGGTTAATTCCAAG 750
||.||||||||||.||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CCTTGGGGATAGATCCCAACAACATAAAAACAAATGCTAAACTCTACTGTAATCGGGGTACGGTTAATTCCAAG 1184
Query 751 CTTAGGAAACTAGATGATGCAATAGAAGACTGCACAAATGCAGTGAAGCTTGATGACACTTACATAAAAGCCTA 824
||||||.||||.||.|||||.|||||||||||.||||||||.||||||||.||||||||||||||.||||||||
Sbjct 1185 CTTAGGCAACTGGAAGATGCCATAGAAGACTGTACAAATGCGGTGAAGCTCGATGACACTTACATCAAAGCCTA 1258
Query 825 CTTGAGAAGAGCTCAGTGTTACATGGACACAGAACAGTATGAAGAAGCAGTACGAGACTATGAAAAAGTATACC 898
|.|||||||||||||||||||||||||||||||.||||.|||||||||.||.||.||||||||||||||.||.|
Sbjct 1259 CCTGAGAAGAGCTCAGTGTTACATGGACACAGAGCAGTTTGAAGAAGCCGTGCGGGACTATGAAAAAGTGTATC 1332
Query 899 AGACAGAGAAAACAAAAGAACACAAACAGCTCCTAAAAAATGCGCAGCTGGAACTGAAGAAGAGTAAGAGGAAA 972
||||.|||||||||||||||||||||||||||||.||.|||||.||||||||||||||||||||.|||||||||
Sbjct 1333 AGACGGAGAAAACAAAAGAACACAAACAGCTCCTTAAGAATGCACAGCTGGAACTGAAGAAGAGCAAGAGGAAA 1406
Query 973 GATTACTACAAGATTCTAGGAGTGGACAAGAATGCCTCTGAGGACGAGATCAAGAAAGCTTATCGGAAACGGGC 1046
||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 1407 GATTACTACAAGATCCTGGGAGTGGACAAGAATGCCTCTGAGGACGAGATCAAGAAAGCTTACCGGAAACGGGC 1480
Query 1047 CTTGATGCACCATCC----------------------------------------------------------- 1061
|||||||||||||||
Sbjct 1481 CTTGATGCACCATCCAGGTGAGCGCTGGAGGAGGTGCAGCAGAGCCCACAGCGCAGATGCAGTGGGCACCCAGG 1554
Query 1062 -------------------------------------------------------------------------- 1061
Sbjct 1555 AGATCGCTCTTCAGTGGGAAGGAGGGGGTGCTGGACTCCCTGTCCTACAGGCTGTGGGAGGTGCCACATTCCAA 1628
Query 1062 -------------------------------------------------------AGATCGGCATAGTGGAGCC 1080
|||||||||.|||||.|||
Sbjct 1629 ACTTGGACAATAATAGACTTTGTTTTCCTGTGTCCCTGGTTTCACTGAATCCTCTAGATCGGCACAGTGGGGCC 1702
Query 1081 AGTGCTGAGGTTCAGAAGGAGGAGGAGAAGAAGTTCAAGGAAGTTGGAGAGGCCTTTACTATCCTCTCTGATCC 1154
|||||.||.||||||||||||||||||||||||||.||||||||.||||||||||||||.||||||||||||||
Sbjct 1703 AGTGCCGAAGTTCAGAAGGAGGAGGAGAAGAAGTTTAAGGAAGTGGGAGAGGCCTTTACCATCCTCTCTGATCC 1776
Query 1155 CAAGAAAAAGACTCGCTATGACAGTGGACAGGACCTAGATGAGGAGGGCATGAATATGGGTGATTTTGATCCAA 1228
|||||||||||||||.||||||||||||||||||.|.|||||||||||||||||||||||.|||||||||.|||
Sbjct 1777 CAAGAAAAAGACTCGTTATGACAGTGGACAGGACTTGGATGAGGAGGGCATGAATATGGGCGATTTTGATGCAA 1850
Query 1229 ACAATATCTTCAAGGCATTCTTTGGCGGTCCTGGCGGCTTCAGCTTTGAAGCATCTGGTCCAGGGAATTTCTTT 1302
||||.|||||||||||||||||.||.||||||||.|||||||||||||||||||||||.|||||||||||||..
Sbjct 1851 ACAACATCTTCAAGGCATTCTTCGGTGGTCCTGGGGGCTTCAGCTTTGAAGCATCTGGCCCAGGGAATTTCTAC 1924
Query 1303 TTTCAATTTGGC-------------------------------------------------------------- 1314
|||||.||||||
Sbjct 1925 TTTCAGTTTGGCTAATGAAGGCCAACTACTTAAAACCCAGAAAATGCAGACTTGCTTGGTTTAACCATGAGTGT 1998
Query 1315 -------------------------------------------------------------------------- 1314
Sbjct 1999 GGACAGTTCACTTCCTCCATCATGTCCCTGTGTACTTAGAGCAGTTTCGTTTTCTCAGTCGGGTGCCCTGTGTC 2072
Query 1315 -------------------------------------------------------------------------- 1314
Sbjct 2073 TGTATGAGGGGTGAAGGAAAGGGGGCCAGTGCTGAGGACTAGGGAGGGAGGGAAGCCAGGGGTAGACAGGGAAG 2146
Query 1315 -------------------------------------------------------------------------- 1314
Sbjct 2147 CAGGCAGCTTGTGAATTTTTGTTGTATTGTTTAACTTTATTAAAAAAGAAAAAGAATAAAATGTTTTGACCGTT 2220
