Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01806
- Subject:
- XR_001743622.2
- Aligned Length:
- 2848
- Identities:
- 1543
- Gaps:
- 1303
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGGGCGCTCAGCCTCGCTGGCCATGCGTCACCCCGGCCTTGGTGGGGGCGGGGCTCCGAAGAGCTCGGTTCAGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCCGGCCGCCTGGGCTCCAGGAGCCCCGGAACCAGGATAAGTTGGATGGCTGCCGCGGCGAAGCGGGGGGCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGTGGACCGTGCCCGGTATTTTCTATACGGGTTCCGGGGCCCGGTAGAGGCGCGCCAAGAGGAAAGGAAAGTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGCGGCCCTGGAACCTGGATATCGCGCGAGATTTGTGACCCAGAAGGAAATCTCTGACCTCAGCTGTGGCTCTT 296
Query 1 ----------------------------------------------------ATGGAGAGCTTGGGGCTGCACA 22
||||||||||||||||||||||
Sbjct 297 GGTGCTGGCCAGAAGCCAACTTCATGTCTGAGTGCACGAGCAGCAGTTTGCCATGGAGAGCTTGGGGCTGCACA 370
Query 23 CGGTGACCCTTAGTGATGGGACAACAGCCTACGTCCAGCAAGCTGTCAAAGGAGAGAAGCTTCTTGAAGGGCAG 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CGGTGACCCTTAGTGATGGGACAACAGCCTACGTCCAGCAAGCTGTCAAAGGAGAGAAGCTTCTTGAAGGGCAG 444
Query 97 GTGATCCAGCTCGAGGATGGGACCACCGCATACATTCACCAGGTGACGGTACAGAAAGAAGCTCTCTCCTTTGA 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTGATCCAGCTCGAGGATGGGACCACCGCATACATTCACCAGGTGACGGTACAGAAAGAAGCTCTCTCCTTTGA 518
Query 171 GGATGGTCAGCCTGTGCAGCTGGAAGATGGCAGCATGGCTTACATACACCGCACACCCAG-------------- 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGATGGTCAGCCTGTGCAGCTGGAAGATGGCAGCATGGCTTACATACACCGCACACCCAGAGGGCTAACCGCGT 592
Query 231 ---------AGAAGGCTATGACCCCAGCACCCTGGAAGCCGTCCAACTGGAAGATGGCTCCACTGCCTACATTC 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTTCCCTGCAGAAGGCTATGACCCCAGCACCCTGGAAGCCGTCCAACTGGAAGATGGCTCCACTGCCTACATTC 666
Query 296 ACCACCCTGTGGCTGTGCCATCGGAGAGCACCATCCTGGCCGTACAGACAGAGGTGGGCTTGGAGGACCTGGCA 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACCACCCTGTGGCTGTGCCATCGGAGAGCACCATCCTGGCCGTACAGACAGAGGTGGGCTTGGAGGACCTGGCA 740
Query 370 GCAGAGGATGATGAGGGCTTCAGTGCAGACGCAGTGGTGGCCCTGGAGCAGTATGCCAGCA------------- 430
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCAGAGGATGATGAGGGCTTCAGTGCAGACGCAGTGGTGGCCCTGGAGCAGTATGCCAGCAAGACTTTTCCCCC 814
Query 431 AGGTTCTTCATGACAGCCAGATTCCCCGTAATGGAAAAGGGCAGCAAGTTGGAGACAGAGCATTCCGCTGTGGC 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AGGTTCTTCATGACAGCCAGATTCCCCGTAATGGAAAAGGGCAGCAAGTTGGAGACAGAGCATTCCGCTGTGGC 888
Query 505 TACAAGGGCTGTGGGCGTCTCTACACCACCGCTCATCACTTAAAGGTGCATGAACGAGCTCATACAGGTGACCG 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TACAAGGGCTGTGGGCGTCTCTACACCACCGCTCATCACTTAAAGGTGCATGAACGAGCTCATACAGGTGACCG 962
Query 579 TCCATACAGATGTGACTTCCCCAGCTGTGGAAAGGCCTTTGCCACAGGCTATGGACTGAAGAGCCACGTTCGTA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TCCATACAGATGTGACTTCCCCAGCTGTGGAAAGGCCTTTGCCACAGGCTATGGACTGAAGAGCCACGTTCGTA 1036
Query 653 CCCACACTGGTGAGAAACCATACAAGTGCCCAGAGGAGCTGTGCAGCAAGGCCTTCAAGACCTCAGGAGACCTG 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCCACACTGGTGAGAAACCATACAAGTGCCCAGAGGAGCTGTGCAGCAAGGCCTTCAAGACCTCAGGAGACCTG 1110
Query 727 CAGAAGCATGTCCGTACCCACACTGGTGAACGCCCGTTCCAGTGCCCTTTTGAGGGCTGTGGCCGCTCCTTCAC 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CAGAAGCATGTCCGTACCCACACTGGTGAACGCCCGTTCCAGTGCCCTTTTGAGGGCTGTGGCCGCTCCTTCAC 1184
Query 801 CACATCTAACATCCGCAAGGTACATGTGCGCACCCACACAGGCGAGAGGCCCTACACCTGCCCGGAGCCCCACT 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CACATCTAACATCCGCAAGGTACATGTGCGCACCCACACAGGCGAGAGGCCCTACACCTGCCCGGAGCCCCACT 1258
Query 875 GTGGCCGCGGCTTCACCAGCGCCACCAACTATAAGAATCACGTGCGCATCCACA--------------CAGGGG 934
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1259 GTGGCCGCGGCTTCACCAGCGCCACCAACTATAAGAATCACGTGCGCATCCACACAGCCCAGTGTCCCCAGGGG 1332
Query 935 AGAAGCCATACGTTTGCACGGTGCCAGGCTGCGGGAAACGCTTCACCGAGTACTCGAGCTTGTATAAGCACCAC 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGAAGCCATACGTTTGCACGGTGCCAGGCTGCGGGAAACGCTTCACCGAGTACTCGAGCTTGTATAAGCACCAC 1406
Query 1009 GTGGTGCACACACACTGCAAGCCCTACACCTGCAGCACCTGCGGCAAGACCTACCGGCAGACCTCCACCTTGGC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GTGGTGCACACACACTGCAAGCCCTACACCTGCAGCACCTGCGGCAAGACCTACCGGCAGACCTCCACCTTGGC 1480
Query 1083 CATGCACAAGCGCAGTGCCCATGGCGAGCTGGAGGCCACGGAGGAGAGTGAGCAGGCCCTCTATGAGCAGCAGC 1156
|||||||||||||||||||||.||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1481 CATGCACAAGCGCAGTGCCCACGGCGAGCTGGAGGCCACGGAGGAGAGCGAGCAGGCCCTCTATGAGCAGCAGC 1554
Query 1157 AACTTGAGGCCGCCTCTGCAGCCGAGGAGAGTCCGCCACCCAAACGACCCCGGATAGCTTACCTTTCGGAGGTG 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AACTTGAGGCCGCCTCTGCAGCCGAGGAGAGTCCGCCACCCAAACGACCCCGGATAGCTTACCTTTCGGAGGTG 1628
Query 1231 AAGGAAGAGAGAGATGACATCCCAGCCCAGGTGGCGATGGTGACTGAAGAAGATGGGGCCCCCCAGGTGGCTCT 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AAGGAAGAGAGAGATGACATCCCAGCCCAGGTGGCGATGGTGACTGAAGAAGATGGGGCCCCCCAGGTGGCTCT 1702
Query 1305 GATCACTCAGGATGGTGCCCAGCAGGTCAGCCTGTCCCCGGAAGACCTGCAGGCCCTGGGGAGTGCCATCAGTA 1378
|||||||||||||||||||||||||
Sbjct 1703 GATCACTCAGGATGGTGCCCAGCAG------------------------------------------------- 1727
Query 1379 TGGTCACCCAGCACGGCAGCACCACCCTCACCATCCCCAGTCCTGATGCCGACCTGGCCACATCTGGCACACAT 1452
Sbjct 1728 -------------------------------------------------------------------------- 1727
Query 1453 ACAGTCACCATGGTCAGCGCCGATGGCACCCAGACGCAGCCCGTCACAATCATTACCTCTGGGGCTGTGGTGGC 1526
||||||||||||||||||||||||||||||||
Sbjct 1728 ------------------------------------------GTCACAATCATTACCTCTGGGGCTGTGGTGGC 1759
Query 1527 TGAGGACTCAAGTGTAGCATCTCTTCGTCATCAACAGGTGGCACTGTTGGCCACAGCCAACGGAACGCACATTG 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760 TGAGGACTCAAGTGTAGCATCTCTTCGTCATCAACAGGTGGCACTGTTGGCCACAGCCAACGGAACGCACATTG 1833
Query 1601 CAGTGCAGCTGGAGGAACAGCAGACCTTAGAGGAGGCCATCAATGTGGCCACTGCGGCCATGCAGCAAGGGGCT 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 CAGTGCAGCTGGAGGAACAGCAGACCTTAGAGGAGGCCATCAATGTGGCCACTGCGGCCATGCAGCAAGGGGCT 1907
Query 1675 GTGACCCTGGAGACAACAGTGTCGGAGAGTGGCTGC-------------------------------------- 1710
||||||||||||||||||||||||||||||||||||
Sbjct 1908 GTGACCCTGGAGACAACAGTGTCGGAGAGTGGCTGCTGAGTCCAAGAGGGCTGGGTCCCACACCATGCTGGAGG 1981
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 1982 AAGTGCCATCTGCATGGCCACTCTTGCCCCCAAGGGCCCAGGCTGTGGCTGACACATAGAAGGTGGCCACATAG 2055
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2056 GTCTCTGGGGTGAGAAGACAGCAAGAAAACTGCCTAACTGAAGGGAATGGGGGCCCTGCTCAAGAAGGGGGCCA 2129
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2130 GGCAGCTGGAATCAGGGGAGTGCATCATCCTCGGGAGCTGACAACAGCCAGGCTACACCAGGGCACCCGCCTCT 2203
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2204 CAAAATCAGCTGGGCGCCCACTCTCCTCCTAAAGAACACCCTTCTGGCCCTCAGTCTGTTCCCCTTCTCAGGTA 2277
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2278 GAGATTGGGGCTGCTATGGGGACTGGCCCTGTAGGGTTGAGCCACAGACAGCTCTTCAGCCCAGTAGCAGTGGA 2351
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2352 GCAGGCCCTGTCCTGCCCTCCCAGCAATAACCACCTCCCTGGAGGCCAGCTGAGATGCCTGGCTACTTGGCACC 2425
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2426 AGGGACTTCCTGACACCACAGTCAATTAATTCCTCAGGGGCCTGTGGCTGAAGAAAAGGTGCCCAGCCCCCACC 2499
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2500 ACTCCTCAGCTGCCCCCCAACCTCTCTATGGCAGAGAGGCAGGGAGTGGCCCTGTACATAGACTGCTGGGGATT 2573
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2574 GGGTTTGATTTGTTTTGTTTTTTTTAATTCCATTTTGATAATTTTTTTCCTGCTCTGGGTGGTGGTGGCACATG 2647
Query 1711 ------------------------------------ 1710
Sbjct 2648 GATGAATGAGTATTTAATAAAAGTTCCAAATTTCCA 2683
