Nucleotide Global Alignment

Description

Query:
ccsbBroad304_01806
Subject:
XR_001743622.2
Aligned Length:
2848
Identities:
1543
Gaps:
1303

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TGGGCGCTCAGCCTCGCTGGCCATGCGTCACCCCGGCCTTGGTGGGGGCGGGGCTCCGAAGAGCTCGGTTCAGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCCCGGCCGCCTGGGCTCCAGGAGCCCCGGAACCAGGATAAGTTGGATGGCTGCCGCGGCGAAGCGGGGGGCGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGTGGACCGTGCCCGGTATTTTCTATACGGGTTCCGGGGCCCGGTAGAGGCGCGCCAAGAGGAAAGGAAAGTGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGCGGCCCTGGAACCTGGATATCGCGCGAGATTTGTGACCCAGAAGGAAATCTCTGACCTCAGCTGTGGCTCTT  296

Query    1  ----------------------------------------------------ATGGAGAGCTTGGGGCTGCACA  22
                                                                ||||||||||||||||||||||
Sbjct  297  GGTGCTGGCCAGAAGCCAACTTCATGTCTGAGTGCACGAGCAGCAGTTTGCCATGGAGAGCTTGGGGCTGCACA  370

Query   23  CGGTGACCCTTAGTGATGGGACAACAGCCTACGTCCAGCAAGCTGTCAAAGGAGAGAAGCTTCTTGAAGGGCAG  96
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CGGTGACCCTTAGTGATGGGACAACAGCCTACGTCCAGCAAGCTGTCAAAGGAGAGAAGCTTCTTGAAGGGCAG  444

Query   97  GTGATCCAGCTCGAGGATGGGACCACCGCATACATTCACCAGGTGACGGTACAGAAAGAAGCTCTCTCCTTTGA  170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTGATCCAGCTCGAGGATGGGACCACCGCATACATTCACCAGGTGACGGTACAGAAAGAAGCTCTCTCCTTTGA  518

Query  171  GGATGGTCAGCCTGTGCAGCTGGAAGATGGCAGCATGGCTTACATACACCGCACACCCAG--------------  230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct  519  GGATGGTCAGCCTGTGCAGCTGGAAGATGGCAGCATGGCTTACATACACCGCACACCCAGAGGGCTAACCGCGT  592

Query  231  ---------AGAAGGCTATGACCCCAGCACCCTGGAAGCCGTCCAACTGGAAGATGGCTCCACTGCCTACATTC  295
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTTCCCTGCAGAAGGCTATGACCCCAGCACCCTGGAAGCCGTCCAACTGGAAGATGGCTCCACTGCCTACATTC  666

Query  296  ACCACCCTGTGGCTGTGCCATCGGAGAGCACCATCCTGGCCGTACAGACAGAGGTGGGCTTGGAGGACCTGGCA  369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACCACCCTGTGGCTGTGCCATCGGAGAGCACCATCCTGGCCGTACAGACAGAGGTGGGCTTGGAGGACCTGGCA  740

Query  370  GCAGAGGATGATGAGGGCTTCAGTGCAGACGCAGTGGTGGCCCTGGAGCAGTATGCCAGCA-------------  430
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct  741  GCAGAGGATGATGAGGGCTTCAGTGCAGACGCAGTGGTGGCCCTGGAGCAGTATGCCAGCAAGACTTTTCCCCC  814

Query  431  AGGTTCTTCATGACAGCCAGATTCCCCGTAATGGAAAAGGGCAGCAAGTTGGAGACAGAGCATTCCGCTGTGGC  504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGGTTCTTCATGACAGCCAGATTCCCCGTAATGGAAAAGGGCAGCAAGTTGGAGACAGAGCATTCCGCTGTGGC  888

Query  505  TACAAGGGCTGTGGGCGTCTCTACACCACCGCTCATCACTTAAAGGTGCATGAACGAGCTCATACAGGTGACCG  578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TACAAGGGCTGTGGGCGTCTCTACACCACCGCTCATCACTTAAAGGTGCATGAACGAGCTCATACAGGTGACCG  962

Query  579  TCCATACAGATGTGACTTCCCCAGCTGTGGAAAGGCCTTTGCCACAGGCTATGGACTGAAGAGCCACGTTCGTA  652
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TCCATACAGATGTGACTTCCCCAGCTGTGGAAAGGCCTTTGCCACAGGCTATGGACTGAAGAGCCACGTTCGTA  1036

Query  653  CCCACACTGGTGAGAAACCATACAAGTGCCCAGAGGAGCTGTGCAGCAAGGCCTTCAAGACCTCAGGAGACCTG  726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CCCACACTGGTGAGAAACCATACAAGTGCCCAGAGGAGCTGTGCAGCAAGGCCTTCAAGACCTCAGGAGACCTG  1110

Query  727  CAGAAGCATGTCCGTACCCACACTGGTGAACGCCCGTTCCAGTGCCCTTTTGAGGGCTGTGGCCGCTCCTTCAC  800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CAGAAGCATGTCCGTACCCACACTGGTGAACGCCCGTTCCAGTGCCCTTTTGAGGGCTGTGGCCGCTCCTTCAC  1184

Query  801  CACATCTAACATCCGCAAGGTACATGTGCGCACCCACACAGGCGAGAGGCCCTACACCTGCCCGGAGCCCCACT  874
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CACATCTAACATCCGCAAGGTACATGTGCGCACCCACACAGGCGAGAGGCCCTACACCTGCCCGGAGCCCCACT  1258

Query  875  GTGGCCGCGGCTTCACCAGCGCCACCAACTATAAGAATCACGTGCGCATCCACA--------------CAGGGG  934
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||
Sbjct 1259  GTGGCCGCGGCTTCACCAGCGCCACCAACTATAAGAATCACGTGCGCATCCACACAGCCCAGTGTCCCCAGGGG  1332

Query  935  AGAAGCCATACGTTTGCACGGTGCCAGGCTGCGGGAAACGCTTCACCGAGTACTCGAGCTTGTATAAGCACCAC  1008
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AGAAGCCATACGTTTGCACGGTGCCAGGCTGCGGGAAACGCTTCACCGAGTACTCGAGCTTGTATAAGCACCAC  1406

Query 1009  GTGGTGCACACACACTGCAAGCCCTACACCTGCAGCACCTGCGGCAAGACCTACCGGCAGACCTCCACCTTGGC  1082
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GTGGTGCACACACACTGCAAGCCCTACACCTGCAGCACCTGCGGCAAGACCTACCGGCAGACCTCCACCTTGGC  1480

Query 1083  CATGCACAAGCGCAGTGCCCATGGCGAGCTGGAGGCCACGGAGGAGAGTGAGCAGGCCCTCTATGAGCAGCAGC  1156
            |||||||||||||||||||||.||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1481  CATGCACAAGCGCAGTGCCCACGGCGAGCTGGAGGCCACGGAGGAGAGCGAGCAGGCCCTCTATGAGCAGCAGC  1554

Query 1157  AACTTGAGGCCGCCTCTGCAGCCGAGGAGAGTCCGCCACCCAAACGACCCCGGATAGCTTACCTTTCGGAGGTG  1230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  AACTTGAGGCCGCCTCTGCAGCCGAGGAGAGTCCGCCACCCAAACGACCCCGGATAGCTTACCTTTCGGAGGTG  1628

Query 1231  AAGGAAGAGAGAGATGACATCCCAGCCCAGGTGGCGATGGTGACTGAAGAAGATGGGGCCCCCCAGGTGGCTCT  1304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  AAGGAAGAGAGAGATGACATCCCAGCCCAGGTGGCGATGGTGACTGAAGAAGATGGGGCCCCCCAGGTGGCTCT  1702

Query 1305  GATCACTCAGGATGGTGCCCAGCAGGTCAGCCTGTCCCCGGAAGACCTGCAGGCCCTGGGGAGTGCCATCAGTA  1378
            |||||||||||||||||||||||||                                                 
Sbjct 1703  GATCACTCAGGATGGTGCCCAGCAG-------------------------------------------------  1727

Query 1379  TGGTCACCCAGCACGGCAGCACCACCCTCACCATCCCCAGTCCTGATGCCGACCTGGCCACATCTGGCACACAT  1452
                                                                                      
Sbjct 1728  --------------------------------------------------------------------------  1727

Query 1453  ACAGTCACCATGGTCAGCGCCGATGGCACCCAGACGCAGCCCGTCACAATCATTACCTCTGGGGCTGTGGTGGC  1526
                                                      ||||||||||||||||||||||||||||||||
Sbjct 1728  ------------------------------------------GTCACAATCATTACCTCTGGGGCTGTGGTGGC  1759

Query 1527  TGAGGACTCAAGTGTAGCATCTCTTCGTCATCAACAGGTGGCACTGTTGGCCACAGCCAACGGAACGCACATTG  1600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760  TGAGGACTCAAGTGTAGCATCTCTTCGTCATCAACAGGTGGCACTGTTGGCCACAGCCAACGGAACGCACATTG  1833

Query 1601  CAGTGCAGCTGGAGGAACAGCAGACCTTAGAGGAGGCCATCAATGTGGCCACTGCGGCCATGCAGCAAGGGGCT  1674
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834  CAGTGCAGCTGGAGGAACAGCAGACCTTAGAGGAGGCCATCAATGTGGCCACTGCGGCCATGCAGCAAGGGGCT  1907

Query 1675  GTGACCCTGGAGACAACAGTGTCGGAGAGTGGCTGC--------------------------------------  1710
            ||||||||||||||||||||||||||||||||||||                                      
Sbjct 1908  GTGACCCTGGAGACAACAGTGTCGGAGAGTGGCTGCTGAGTCCAAGAGGGCTGGGTCCCACACCATGCTGGAGG  1981

Query 1711  --------------------------------------------------------------------------  1710
                                                                                      
Sbjct 1982  AAGTGCCATCTGCATGGCCACTCTTGCCCCCAAGGGCCCAGGCTGTGGCTGACACATAGAAGGTGGCCACATAG  2055

Query 1711  --------------------------------------------------------------------------  1710
                                                                                      
Sbjct 2056  GTCTCTGGGGTGAGAAGACAGCAAGAAAACTGCCTAACTGAAGGGAATGGGGGCCCTGCTCAAGAAGGGGGCCA  2129

Query 1711  --------------------------------------------------------------------------  1710
                                                                                      
Sbjct 2130  GGCAGCTGGAATCAGGGGAGTGCATCATCCTCGGGAGCTGACAACAGCCAGGCTACACCAGGGCACCCGCCTCT  2203

Query 1711  --------------------------------------------------------------------------  1710
                                                                                      
Sbjct 2204  CAAAATCAGCTGGGCGCCCACTCTCCTCCTAAAGAACACCCTTCTGGCCCTCAGTCTGTTCCCCTTCTCAGGTA  2277

Query 1711  --------------------------------------------------------------------------  1710
                                                                                      
Sbjct 2278  GAGATTGGGGCTGCTATGGGGACTGGCCCTGTAGGGTTGAGCCACAGACAGCTCTTCAGCCCAGTAGCAGTGGA  2351

Query 1711  --------------------------------------------------------------------------  1710
                                                                                      
Sbjct 2352  GCAGGCCCTGTCCTGCCCTCCCAGCAATAACCACCTCCCTGGAGGCCAGCTGAGATGCCTGGCTACTTGGCACC  2425

Query 1711  --------------------------------------------------------------------------  1710
                                                                                      
Sbjct 2426  AGGGACTTCCTGACACCACAGTCAATTAATTCCTCAGGGGCCTGTGGCTGAAGAAAAGGTGCCCAGCCCCCACC  2499

Query 1711  --------------------------------------------------------------------------  1710
                                                                                      
Sbjct 2500  ACTCCTCAGCTGCCCCCCAACCTCTCTATGGCAGAGAGGCAGGGAGTGGCCCTGTACATAGACTGCTGGGGATT  2573

Query 1711  --------------------------------------------------------------------------  1710
                                                                                      
Sbjct 2574  GGGTTTGATTTGTTTTGTTTTTTTTAATTCCATTTTGATAATTTTTTTCCTGCTCTGGGTGGTGGTGGCACATG  2647

Query 1711  ------------------------------------  1710
                                                
Sbjct 2648  GATGAATGAGTATTTAATAAAAGTTCCAAATTTCCA  2683

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