Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01806
- Subject:
- XR_001743627.2
- Aligned Length:
- 2812
- Identities:
- 1543
- Gaps:
- 1267
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGGGCGCTCAGCCTCGCTGGCCATGCGTCACCCCGGCCTTGGTGGGGGCGGGGCTCCGAAGAGCTCGGTTCAGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCCGGCCGCCTGGGCTCCAGGAGCCCCGGAACCAGGATAAGTTGGATGGCTGCCGCGGCGAAGCGGGGGGCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGTGGACCGTGCCCGGTATTTTCTATACGGGTTCCGGGGCCCGGTAGAGGCGCGCCAAGAGGAAAGGAAAGTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGCGGCCCTGGAACCTGGATATCGCGCGAGATTTGTGACCCAGAAGGAAATCTCTGACCTCAGCTGTGGCTCTT 296
Query 1 ----------------------------------------------------ATGGAGAGCTTGGGGCTGCACA 22
||||||||||||||||||||||
Sbjct 297 GGTGCTGGCCAGAAGCCAACTTCATGTCTGAGTGCACGAGCAGCAGTTTGCCATGGAGAGCTTGGGGCTGCACA 370
Query 23 CGGTGACCCTTAGTGATGGGACAACAGCCTACGTCCAGCAAGCTGTCAAAGGAGAGAAGCTTCTTGAAGGGCAG 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CGGTGACCCTTAGTGATGGGACAACAGCCTACGTCCAGCAAGCTGTCAAAGGAGAGAAGCTTCTTGAAGGGCAG 444
Query 97 GTGATCCAGCTCGAGGATGGGACCACCGCATACATTCACCAGGTGACGGTACAGAAAGAAGCTCTCTCCTTTGA 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTGATCCAGCTCGAGGATGGGACCACCGCATACATTCACCAGGTGACGGTACAGAAAGAAGCTCTCTCCTTTGA 518
Query 171 GGATGGTCAGCCTGTGCAGCTGGAAGATGGCAGCATGGCTTACATACACCGCACACCCAGAGAAGGCTATGACC 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGATGGTCAGCCTGTGCAGCTGGAAGATGGCAGCATGGCTTACATACACCGCACACCCAGAGAAGGCTATGACC 592
Query 245 CCAGCACCCTGGAAGCCGTCCAACTGGAAGATGGCTCCACTGCCTACATTCACCACCCTGTGGCTGTGCCATCG 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCAGCACCCTGGAAGCCGTCCAACTGGAAGATGGCTCCACTGCCTACATTCACCACCCTGTGGCTGTGCCATCG 666
Query 319 GAGAGCACCATCCTGGCCGTACAGACAGAGGTGGGCTTGGAGGACCTGGCAGCAGAGGATGATGAGGGCTTCAG 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAGAGCACCATCCTGGCCGTACAGACAGAGGTGGGCTTGGAGGACCTGGCAGCAGAGGATGATGAGGGCTTCAG 740
Query 393 TGCAGACGCAGTGGTGGCCCTGGAGCAGTATGCCAGCAAGGTTCTTCATGACAGCCAGATTCCCCGTAATGGAA 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGCAGACGCAGTGGTGGCCCTGGAGCAGTATGCCAGCAAGGTTCTTCATGACAGCCAGATTCCCCGTAATGGAA 814
Query 467 AAGGGCAGCAAGTTGGAGACAGAGCATTCCGCTGTGGCTACAAGGGCTGTGGGCGTCTCTACACCACCGCTCAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGGGCAGCAAGTTGGAGACAGAGCATTCCGCTGTGGCTACAAGGGCTGTGGGCGTCTCTACACCACCGCTCAT 888
Query 541 CACTTAAAGGTGCATGAACGAGCTCATACAGGTGACCGTCCATACAGATGTGACTTCCCCAGCTGTGGAAAGGC 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CACTTAAAGGTGCATGAACGAGCTCATACAGGTGACCGTCCATACAGATGTGACTTCCCCAGCTGTGGAAAGGC 962
Query 615 CTTTGCCACAGGCTATGGACTGAAGAGCCACGTTCGTACCCACACTGGTGAGAAACCATACAAGTGCCCAGAGG 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTTTGCCACAGGCTATGGACTGAAGAGCCACGTTCGTACCCACACTGGTGAGAAACCATACAAGTGCCCAGAGG 1036
Query 689 AGCTGTGCAGCAAGGCCTTCAAGACCTCAGGAGACCTGCAGAAGCATGTCCGTACCCACACTGGTGAACGCCCG 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGCTGTGCAGCAAGGCCTTCAAGACCTCAGGAGACCTGCAGAAGCATGTCCGTACCCACACTGGTGAACGCCCG 1110
Query 763 TTCCAGTGCCCTTTTGAGGGCTGTGGCCGCTCCTTCACCACATCTAACATCCGCAAGGTACATGTGCGCACCCA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TTCCAGTGCCCTTTTGAGGGCTGTGGCCGCTCCTTCACCACATCTAACATCCGCAAGGTACATGTGCGCACCCA 1184
Query 837 CACAGGCGAGAGGCCCTACACCTGCCCGGAGCCCCACTGTGGCCGCGGCTTCACCAGCGCCACCAACTATAAGA 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CACAGGCGAGAGGCCCTACACCTGCCCGGAGCCCCACTGTGGCCGCGGCTTCACCAGCGCCACCAACTATAAGA 1258
Query 911 ATCACGTGCGCATCCACA--------------CAGGGGAGAAGCCATACGTTTGCACGGTGCCAGGCTGCGGGA 970
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATCACGTGCGCATCCACACAGCCCAGTGTCCCCAGGGGAGAAGCCATACGTTTGCACGGTGCCAGGCTGCGGGA 1332
Query 971 AACGCTTCACCGAGTACTCGAGCTTGTATAAGCACCACGTGGTGCACACACACTGCAAGCCCTACACCTGCAGC 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AACGCTTCACCGAGTACTCGAGCTTGTATAAGCACCACGTGGTGCACACACACTGCAAGCCCTACACCTGCAGC 1406
Query 1045 ACCTGCGGCAAGACCTACCGGCAGACCTCCACCTTGGCCATGCACAAGCGCAGTGCCCATGGCGAGCTGGAGGC 1118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 1407 ACCTGCGGCAAGACCTACCGGCAGACCTCCACCTTGGCCATGCACAAGCGCAGTGCCCACGGCGAGCTGGAGGC 1480
Query 1119 CACGGAGGAGAGTGAGCAGGCCCTCTATGAGCAGCAGCAACTTGAGGCCGCCTCTGCAGCCGAGGAGAGTCCGC 1192
||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CACGGAGGAGAGCGAGCAGGCCCTCTATGAGCAGCAGCAACTTGAGGCCGCCTCTGCAGCCGAGGAGAGTCCGC 1554
Query 1193 CACCCAAACGACCCCGGATAGCTTACCTTTCGGAGGTGAAGGAAGAGAGAGATGACATCCCAGCCCAGGTGGCG 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CACCCAAACGACCCCGGATAGCTTACCTTTCGGAGGTGAAGGAAGAGAGAGATGACATCCCAGCCCAGGTGGCG 1628
Query 1267 ATGGTGACTGAAGAAGATGGGGCCCCCCAGGTGGCTCTGATCACTCAGGATGGTGCCCAGCAGGTCAGCCTGTC 1340
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 ATGGTGACTGAAGAAGATGGGGCCCCCCAGGTGGCTCTGATCACTCAGGATGGTGCCCAGCAG----------- 1691
Query 1341 CCCGGAAGACCTGCAGGCCCTGGGGAGTGCCATCAGTATGGTCACCCAGCACGGCAGCACCACCCTCACCATCC 1414
Sbjct 1692 -------------------------------------------------------------------------- 1691
Query 1415 CCAGTCCTGATGCCGACCTGGCCACATCTGGCACACATACAGTCACCATGGTCAGCGCCGATGGCACCCAGACG 1488
Sbjct 1692 -------------------------------------------------------------------------- 1691
Query 1489 CAGCCCGTCACAATCATTACCTCTGGGGCTGTGGTGGCTGAGGACTCAAGTGTAGCATCTCTTCGTCATCAACA 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 ------GTCACAATCATTACCTCTGGGGCTGTGGTGGCTGAGGACTCAAGTGTAGCATCTCTTCGTCATCAACA 1759
Query 1563 GGTGGCACTGTTGGCCACAGCCAACGGAACGCACATTGCAGTGCAGCTGGAGGAACAGCAGACCTTAGAGGAGG 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760 GGTGGCACTGTTGGCCACAGCCAACGGAACGCACATTGCAGTGCAGCTGGAGGAACAGCAGACCTTAGAGGAGG 1833
Query 1637 CCATCAATGTGGCCACTGCGGCCATGCAGCAAGGGGCTGTGACCCTGGAGACAACAGTGTCGGAGAGTGGCTGC 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 CCATCAATGTGGCCACTGCGGCCATGCAGCAAGGGGCTGTGACCCTGGAGACAACAGTGTCGGAGAGTGGCTGC 1907
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 1908 TGAGTCCAAGAGGGCTGGGTCCCACACCATGCTGGAGGAAGTGCCATCTGCATGGCCACTCTTGCCCCCAAGGG 1981
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 1982 CCCAGGCTGTGGCTGACACATAGAAGGTGGCCACATAGGTCTCTGGGGTGAGAAGACAGCAAGAAAACTGCCTA 2055
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2056 ACTGAAGGGAATGGGGGCCCTGCTCAAGAAGGGGGCCAGGCAGCTGGAATCAGGGGAGTGCATCATCCTCGGGA 2129
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2130 GCTGACAACAGCCAGGCTACACCAGGGCACCCGCCTCTCAAAATCAGCTGGGCGCCCACTCTCCTCCTAAAGAA 2203
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2204 CACCCTTCTGGCCCTCAGTCTGTTCCCCTTCTCAGGTAGAGATTGGGGCTGCTATGGGGACTGGCCCTGTAGGG 2277
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2278 TTGAGCCACAGACAGCTCTTCAGCCCAGTAGCAGTGGAGCAGGCCCTGTCCTGCCCTCCCAGCAATAACCACCT 2351
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2352 CCCTGGAGGCCAGCTGAGATGCCTGGCTACTTGGCACCAGGGACTTCCTGACACCACAGTCAATTAATTCCTCA 2425
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2426 GGGGCCTGTGGCTGAAGAAAAGGTGCCCAGCCCCCACCACTCCTCAGCTGCCCCCCAACCTCTCTATGGCAGAG 2499
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2500 AGGCAGGGAGTGGCCCTGTACATAGACTGCTGGGGATTGGGTTTGATTTGTTTTGTTTTTTTTAATTCCATTTT 2573
Query 1711 -------------------------------------------------------------------------- 1710
Sbjct 2574 GATAATTTTTTTCCTGCTCTGGGTGGTGGTGGCACATGGATGAATGAGTATTTAATAAAAGTTCCAAATTTCCA 2647