Nucleotide Global Alignment

Description

• Query: ccsbBroad304_01821
• Subject: NM_001260488.1
• Aligned Length: 2157
• Identities: 1398
• Gaps: 549

Alignment

Query    1  ---------------------------------------ATGACCACGTTGAAGGAGGCAGTGACCTTCAAGGA  35
                                                   ||.|      ||.||||||||||||||||||||||
Sbjct    1  ATGATAAAGAGAAGCAAAGTACTTGTATTCTGTTCAAAGATTA------TGGAGGAGGCAGTGACCTTCAAGGA  68

Query   36  CGTGGCTGTGGTCTTCACTGAGGAAGAGCTGAGGCTGCTGGACCTTGCCCAGAGGAAACTGTACCGAGAAGTGA  109
            .|||||||||||||||||||||||.||||||.||||||||||||.||||||||||||.|||||||||||.||||
Sbjct   69  TGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGAGGAAGCTGTACCGAGATGTGA  142

Query  110  TGCTGGAGAACTTCAGGAACCTGCTCTCAGTGGGGCATCAATCACTCCACAGAGATACTTTCCACTTCCTAAAG  183
            |||||||||||||||||||||||||||||||||||||||||.|..|||||..||||||||.|||||||||||.|
Sbjct  143  TGCTGGAGAACTTCAGGAACCTGCTCTCAGTGGGGCATCAACCGTTCCACCAAGATACTTGCCACTTCCTAAGG  216

Query  184  GAAGAAAAGTTTTGGATGATGGAGACAGCAACCCAAAGAGAAGGGAATTTAGGAGGCAAGATCCAAATGGAGAT  257
            ||||||||||||||||||||||.||||||||||||||||||||||||||.|||||||||||||||||..|||.|
Sbjct  217  GAAGAAAAGTTTTGGATGATGGGGACAGCAACCCAAAGAGAAGGGAATTCAGGAGGCAAGATCCAAACTGAGTT  290

Query  258  GGAGACTGTTTCAGAATCAGGAACACATGAAGGCTTGTTCAGTCATCAAACCTGGGAACAAATTTCAAGTGACT  331
            ||||.|||||.|||||.|||||.|||||||||..|.||.|.|.||.||||.|||||||||||||.|||..||||
Sbjct  291  GGAGTCTGTTCCAGAAGCAGGAGCACATGAAGAGTGGTCCTGCCAGCAAATCTGGGAACAAATTGCAAAAGACT  364

Query  332  TAACCAGGTTTCAAGACTCCATGGTAAACAGCTTTCAGTTCTCCAAACAAGATGATATGCCCTGCCAGGTTGAT  405
            |||||||||.|||.|||||.||..||||.|.||.||||||||...||.|.|.||||.|.||||.|||||||||.
Sbjct  365  TAACCAGGTCTCAGGACTCTATCATAAATAACTCTCAGTTCTTTGAAAATGGTGATGTCCCCTCCCAGGTTGAA  438

Query  406  GCAGGACTATCTATAATTCACGTAAGACAGAAACCTTCTGAGGGTAGGACGTGTAAAAAGTCCTTTAGTGATGT  479
            |||||||||.|.|.||||||...|.|||||||||||||..|||||.|||.|||||||.|||||||.||||||||
Sbjct  439  GCAGGACTACCCACAATTCATACAGGACAGAAACCTTCCCAGGGTGGGAAGTGTAAACAGTCCTTCAGTGATGT  512

Query  480  CTCCGTCCTTGATCTTCATCAACAACTACAGTCAAGAGAGAAGTCTCATACATGTGATGAATGTGGAAAGAGTT  553
            ..||.||.|||||||||.|||.||..||.|.|||..||||||||||.|||||||||||||.||||||||.||..
Sbjct  513  TCCCATCTTTGATCTTCCTCAGCAGTTATACTCAGAAGAGAAGTCTTATACATGTGATGAGTGTGGAAAAAGCA  586

Query  554  TCTGTTATAGCTCAGCTCTTCGTATTCATCAGAGAGTTCACATGGGGGAGAAACTCTATAATTGTGATGTGTGT  627
            |||||||.|.|||||||||||.|.|||||||||||||.|||.||||.||||||||||.||..||||||||||||
Sbjct  587  TCTGTTACATCTCAGCTCTTCATGTTCATCAGAGAGTCCACGTGGGAGAGAAACTCTTTATGTGTGATGTGTGT  660

Query  628  GGTAAGGAATTCAATCAGAGCTCACATCTGCAAATTCATCAGAGAATCCACACTGGAGAGAAACCATTCAAATG  701
            ||.||||||||.|.|||.||||||||||||||||.||||||||||.||||||||||||||||||||||||||||
Sbjct  661  GGCAAGGAATTTAGTCAAAGCTCACATCTGCAAACTCATCAGAGAGTCCACACTGGAGAGAAACCATTCAAATG  734

Query  702  TGAGCAGTGTGGGAAAGGCTTTAGTCGTAGATCAGGACTTTATGTTCATCGTAAATTACACACAGGAGTGAAAC  775
            ||||||.|||||||||||.||.|||||||||||||.||||.|||||||||||||||||||||||||||.|||||
Sbjct  735  TGAGCAATGTGGGAAAGGTTTCAGTCGTAGATCAGCACTTAATGTTCATCGTAAATTACACACAGGAGAGAAAC  808

Query  776  CTCATATTTGTGAGAAATGTGGGAAGGCCTTCATTCATGATTCCCAGCTTCAGGAACATCAAAGAATCCATACT  849
            ||.|.|||||||||..||||||||||||||||||||||||||||||||||.||||||||.|.||||||||||||
Sbjct  809  CTTACATTTGTGAGGCATGTGGGAAGGCCTTCATTCATGATTCCCAGCTTAAGGAACATAAGAGAATCCATACT  882

Query  850  GGGGAGAAGCCATTCAAATGTGATATATGTTGTAAGAGCTTCCGTAGTAGAGCAAATCTTAATAGGCATTCCAT  923
            ||||||||.|||||||||||||||||||||.||||||.||||..|..|||..|||..|||||.||.||||||||
Sbjct  883  GGGGAGAAACCATTCAAATGTGATATATGTGGTAAGACCTTCTATTTTAGGTCAAGACTTAAGAGCCATTCCAT  956

Query  924  GGTTCACATGCGAGAGAAACCATTCAGATGTGATACATGTGGTAAGAGCTTTGGTCTGAAATCAGCACTTAATA  997
            ||||||||...||||.||||||||.||.|||||||||||||.||||||||||..||.||.||||||||||||||
Sbjct  957  GGTTCACACAGGAGAAAAACCATTTAGGTGTGATACATGTGATAAGAGCTTTCATCAGAGATCAGCACTTAATA  1030

Query  998  GTCATCGCATGGTCCACACAGGAGAGAAACGGTACAAATGTGAGGAATGTGGAAAACGCTTCATTTATAGGCAA  1071
            |.|||.||||||||||||||||||||||||.|||||.|||||||.|.|||||||||.||||.|||..|||||.|
Sbjct 1031  GGCATTGCATGGTCCACACAGGAGAGAAACCGTACAGATGTGAGCAGTGTGGAAAAGGCTTTATTGGTAGGCTA  1104

Query 1072  GATCTTTATAAGCATCAGATAGACCACACAGGGGAGAAGCCATATAATTGTAAAGAATGTGGAAAGAGCTTCAG  1145
            |||.||||||||||||||.|.|.|||||||||.|||||.|||||||||||||||||||||||.|||||||||||
Sbjct 1105  GATTTTTATAAGCATCAGGTGGTCCACACAGGAGAGAAACCATATAATTGTAAAGAATGTGGGAAGAGCTTCAG  1178

Query 1146  ATGGGCCTCAGGTCTTTCAAGACATGTGCGAGTCCACAGTGGAGAGACAACATTCAAATGTGAAGAATGTGGGA  1219
            ||||.|||||.|.||||..|..|||..||||||||||||||||||.|.||..||||||||||||||||||||.|
Sbjct 1179  ATGGTCCTCATGCCTTTTGAACCATCAGCGAGTCCACAGTGGAGAAAAAAGCTTCAAATGTGAAGAATGTGGAA  1252

Query 1220  AGGGATTTTATACAAATTCACAACGTTATTCTCACCAGAGAGCGCACAGTGGAGAAAAGCCATATAGATGTGAG  1293
            ||||||||||||||||||||||||..|.|||.||.||||||.|.||||||||.|||||||||||||.|||||||
Sbjct 1253  AGGGATTTTATACAAATTCACAACTGTCTTCCCATCAGAGATCCCACAGTGGTGAAAAGCCATATAAATGTGAG  1326

Query 1294  GAGTGTGGGAAGGGCTACAAAAGGAGGTTGGATCTTGACTTTCATCAGAGGGTCCACAGAGGAGAGAAACCCTA  1367
            |||||||||||||||||           ||                                            
Sbjct 1327  GAGTGTGGGAAGGGCTA-----------TG--------------------------------------------  1345

Query 1368  TAATTGTAAGGAATGTGGGAAGAGCTTTGGCTGGGCCTCGTGTCTTTTGAATCATCAGAGAATCCACAGTGGAG  1441
                                                                                      
Sbjct 1346  --------------------------------------------------------------------------  1345

Query 1442  AAAAACCATTTAAATGTGAAGAATGTGGGAAAAGATTTACTCAGAATTCACAACTTTATACCCATCGTAGAGTC  1515
                                                ||||                                  
Sbjct 1346  ------------------------------------TTAC----------------------------------  1349

Query 1516  CACAGTGGAGAAAAACCATTCAAATGTGAAGAGTGTGGGAAAAGATTTACTCAGAATTCACAACTTTATTCTCA  1589
                                                                                      
Sbjct 1350  --------------------------------------------------------------------------  1349

Query 1590  TCGCAGAGTCCACACTGGAGTAAAGCCATACAAATGTGAAGAGTGTGGGAAGGGCTTCAACAGTAAGTTTAATC  1663
                                                                           |||||||||||
Sbjct 1350  ---------------------------------------------------------------TAAGTTTAATC  1360

Query 1664  TTGACATGCACCAGAGGGTCCACACCGGAGAGAGACCTTATAATTGTAAAGAATGTGGGAAGAGCTTTAGCCGG  1737
            |||||.|||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||.||||||||||
Sbjct 1361  TTGACTTGCACCAGAGGGTCCACACGGGAGAGAGACCTTATAATTGTAAGGAATGTGGGAAGAACTTTAGCCGG  1434

Query 1738  GCCTCAAGTATTTTGAATCATAAGAGACTCCATGGTGATGAAAAGCCATTCAAATGTGAAGAGTGTGGGAAGAG  1811
            |||||||||||||||||||||||||||||||                                           
Sbjct 1435  GCCTCAAGTATTTTGAATCATAAGAGACTCC-------------------------------------------  1465

Query 1812  ATTTACTGAGAATTCACAGCTTCATTCCCATCAGAGGGTTCACACTGGGGAAAAGCCATACAAATGTGAGAAGT  1885
                ||||                   |||                  |.||||.||||.||            
Sbjct 1466  ----ACTG-------------------CCA------------------GAAAAAACCATTCA------------  1486

Query 1886  GTGGAAAGAGCTTCAGATGGGCCTCAACTCATCTAACCCATCAGAGACTCCACAGTAGAGAAAAACTACTTCAA  1959
                                                                                    ||
Sbjct 1487  ------------------------------------------------------------------------AA  1488

Query 1960  TGTGAGGACTGTGGGAAGAGCATTGTGCACAGTTCATGCCTTAAAGACCAACAAAGAGACCAAAGTGGAGAGAA  2033
            ||||||||||||||.|||||..||||.|||||..|||.||.|||||||||.|..||||||.|.|||||.||.||
Sbjct 1489  TGTGAGGACTGTGGAAAGAGGCTTGTACACAGGACATACCGTAAAGACCAGCCGAGAGACTATAGTGGGGAAAA  1562

Query 2034  AACATCTAAATGTGAGGACTGTGGGAAGCGCTACAAGAGGCGCTTGAATCTTGATACGCTTTTGTCATTATTTT  2107
            ..||||.|||||||||||.|||||||..|||||||||||||||||||||||.||||..|||||.|||||||||.
Sbjct 1563  CCCATCCAAATGTGAGGATTGTGGGAGACGCTACAAGAGGCGCTTGAATCTGGATATACTTTTATCATTATTTC  1636

Query 2108  TAAATGACACA  2118
            |||||||||||
Sbjct 1637  TAAATGACACA  1647