Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01965
- Subject:
- NR_104579.1
- Aligned Length:
- 1716
- Identities:
- 574
- Gaps:
- 1142
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAGCAAGGGGAGGAAGAGGCCGGGAGAAGAGGGCTAGAGCAAAGACCGAGAGCCGGAGAAAGGCGAAAGGCGC 74
Query 1 ----------------------------------------------------------------------ATGC 4
||||
Sbjct 75 GGTGAGCAATCGCCGACGTAGAGAGGGCAGCCCTCCGCGCTGCAATATTGAGAAGGCACCCGCGGGACGCATGC 148
Query 5 GCACGGCGGACGGAGGCGAGCCGGCCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGTGGGCTCCAGATGGGA 78
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCACGGCGGACGGAGGCGAGCCGGCCGGGGCTTCCTCCCCGGCCGGCAGGGTGGACGGTGGGCTC--------- 213
Query 79 TCAGAGCGGATGGAGATGCGGAAGCGGCAGATGCCCGCCGCCCAGGACACACCAGGCGCCGCCCCAGGCCAGCC 152
Sbjct 214 -------------------------------------------------------------------------- 213
Query 153 CGGAGCGGGGAGTCGCGGGTCCAACGCATGCTGCTTCTGCTGGTGCTGCTGTTGTAGCTGCTCGTGTCTCACTG 226
||||||||
Sbjct 214 ------------------------------------------------------------------TCTCACTG 221
Query 227 TTAGAAACCAGGAAGATCAGAGGCCCACAATAGCTTCCCACGAACTCAGAGCAGATCTTCCAACCTGGGAAGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TTAGAAACCAGGAAGATCAGAGGCCCACAATAGCTTCCCACGAACTCAGAGCAGATCTTCCAACCTGGGAAGAA 295
Query 301 AGCCCTGCTCCTACTCTGGAAGAAGTCAACGCCTGGGCTCAGTCATTTGACAAATTAATGGTCACTCCAGCAGG 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 AGCCCTGCTCCTACTCTGGAAGAAGTCAACGCCTGGGCTCAGTCATTTGACAAATTAATGGTCACTCCAGCAGG 369
Query 375 AAGGAATGCATTCCGTGAATTCCTCCGAACAGAATTCAGTGAGGAAAATATGCTCTTCTGGATGGCCTGTGAGG 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 AAGGAATGCATTCCGTGAATTCCTCCGAACAGAATTCAGTGAGGAAAATATGCTCTTCTGGATGGCCTGTGAGG 443
Query 449 AACTGAAAAAGGAAGCTAATAAAAACATTATTGAAGAGAAAGCAAGGATAATCTATGAAGACTACATTTCTATA 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 AACTGAAAAAGGAAGCTAATAAAAACATTATTGAAGAGAAAGCAAGGATAATCTATGAAGACTACATTTCTATA 517
Query 523 CTTTCTCCTAAGGAGGTGAGCTTAGACTCCCGGGTGAGAGAAGTGATCAACAGAAACATGGTGGAGCCATCCCA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 CTTTCTCCTAAGGAGGTGAGCTTAGACTCCCGGGTGAGAGAAGTGATCAACAGAAACATGGTGGAGCCATCCCA 591
Query 597 ACACATATTCGATGATGCTCAACTTCAGATTTACACCCTGATGCACAGAGACTCATATCCTCGATTCATGAACT 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 ACACATATTCGATGATGCTCAACTTCAGATTTACACCCTGATGCACAGAGACTCATATCCTCGATTCATGAACT 665
Query 671 CTGCTGTCTATAAGGACTTGCTTCAGTCCTTATCGGAGAAATCTATTGAAGCA--------------------- 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CTGCTGTCTATAAGGACTTGCTTCAGTCCTTATCGGAGAAATCTATTGAAGCATAGGATTTTTCAAATATATTT 739
Query 724 -------------------------------------------------------------------------- 723
Sbjct 740 ATTATTAATAAAATAATAAAAGAATTCATGGGCTACAACTAGCACAGGGAATTTAGAGGTTGTAGCATCTTCTG 813
Query 724 -------------------------------------------------------------------------- 723
Sbjct 814 CTGGAGTAATACTCAGGCTATTCTAATAACAGATGATTCCTTCAACAGACTGCTATATATTCACCATGTAAACT 887
Query 724 -------------------------------------------------------------------------- 723
Sbjct 888 GCAGCCACCTTTAGTGATACTTTTGAAAAAAAAAAATAAAGGGATATGGCTGTTGTAGAAAGATAGCGTATTTG 961
Query 724 -------------------------------------------------------------------------- 723
Sbjct 962 CATTTACAATAACAGTAGCATGTTGTCAGTGGCCAAGGCTACACAGAAGGCTCCCTGCTGCCCGGAGCAGGTAC 1035
Query 724 -------------------------------------------------------------------------- 723
Sbjct 1036 ATCCACCAGAGCAAAGGGAACCACTTTTATTTTGCATGAGTTTGGTAACTGATTACTCTCCCCTCAAAGAAAAG 1109
Query 724 -------------------------------------------------------------------------- 723
Sbjct 1110 ACATTCAGGTGTTTCTCAACGACATCTTCTGTCCAGCAAGCTCGGTTTGAATACGTCACTTACCAGTGCCATTG 1183
Query 724 -------------------------------------------------------------------------- 723
Sbjct 1184 CAGGACCCAAATTCACAGTTCATAAAAGATGTGACCACTACATGTAAAAATAGCATTCTACTTGATCTTACAGT 1257
Query 724 -------------------------------------------------------------------------- 723
Sbjct 1258 ATGTATGTATGTATGTATGGAGACATATGTGTGCGTGTGGATGTCTACATGGTTAATGGAAAGCACTGTGCTCT 1331
Query 724 -------------------------------------------------------------------------- 723
Sbjct 1332 GAAGTGGATCAGTCTCAAGTGTCTGGTAACAGCAGCAGTGCTTAGAAAATTCTTTTGTTGAAAAGAGTTACTGT 1405
Query 724 -------------------------------------------------------------------------- 723
Sbjct 1406 TATTATCAGAATTTGCCAACCTAAAGAATGAATTTTTAAATTCATAACTTGGTCATGTTCACAACAAAACTGTC 1479
Query 724 -------------------------------------------------------------------------- 723
Sbjct 1480 AAATAAGCATATTTCCATTTTTATTACTGAAAGAAATATGGGCATTTTCATTCTTTAAAGAAATAAAGCACAAG 1553
Query 724 -------------- 723
Sbjct 1554 AATTTTATCTCAAT 1567
