Nucleotide Global Alignment

Description

Query:
ccsbBroad304_02140
Subject:
NR_104011.2
Aligned Length:
2039
Identities:
389
Gaps:
1633

Alignment

Query    1  -------------------ATGGCGTCGCTCAAATGTAGCACCGTCGTCTGCGTGATCTGCTTGGAGAAGCCCA  55
                               |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  AGTCTCCTTCCACAAAACCATGGCGTCGCTCAAATGTAGCACCGTCGTCTGCGTGATCTGCTTGGAGAAGCCCA  74

Query   56  AATACCGCTGTCCAGCCTGCCGCGTGCCCTACTGCTCGGTAGTCTGCTTCCGGAAGCACAAAGAACAGTGCAAC  129
            |||||||||||||||||||||||||||||||                                |||||||||||
Sbjct   75  AATACCGCTGTCCAGCCTGCCGCGTGCCCTA--------------------------------AACAGTGCAAC  116

Query  130  CCTGAAACTCGTCCTGTTGAGAAAAAAATAAGATCAGCTCTTCCTACCAAAACCGTAAAGCCTGTGGAAAACAA  203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  117  CCTGAAACTCGTCCTGTTGAGAAAAAAATAAGATCAGCTCTTCCTACCAAAACCGTAAAGCCTGTGGAAAACAA  190

Query  204  AGATGATGATGACTCTATAGCTGATTTTCTCAATAGTGATGAGGAAGAAGACAGAGTTTCTTTGCAGAATTTAA  277
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  191  AGATGATGATGACTCTATAGCTGATTTTCTCAATAGTGATGAGGAAGAAGACAGAGTTTCTTTGCAGAATTTAA  264

Query  278  AGAATTTAG-GGGAAT-----------------------------------------------CTGCAAC----  299
            ||||||||| .|||.|                                               |||||||    
Sbjct  265  AGAATTTAGATGGACTCTCGTCCTGTCACCCAGGCTGGAGTGCAGCGGCGCAATCTCGGCTCACTGCAACCTCT  338

Query  300  ---------ATT-AAGAAGCTTATTGCTCAATCCACA-CCT------------------CAGGC----------  334
                     ||| |||.|    ||| ||||..||.|| |||                  |||||          
Sbjct  339  CCCTCCCAGATTCAAGCA----ATT-CTCATGCCTCAGCCTCCCGAGCAGCTGGGACTACAGGCGCCTGCCACT  407

Query  335  -------------------------AGTTGA---------------------------TGGTC---AA------  347
                                     |||.||                           |||||   ||      
Sbjct  408  ACGCCCAACCAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTG  481

Query  348  -------------------CCTCGA-----------TCAGGGA----------GAAGACA--------------  367
                               ||||||           .|.||||          | ||.||              
Sbjct  482  ACCTCAGGTGATACACCCGCCTCGACTTCCCAAAGTACTGGGATTATAGGCGTG-AGCCACCGCTCCAGGCCCT  554

Query  368  AAGCAAA----------------GCTCATGAGAGCTTACATGCAAGAGCCTTTGTT-------TGTGGAGTT--  416
            ||||.||                ||||.|||   ||  ||| |.|.||||||.|||       ||||  |||  
Sbjct  555  AAGCTAAACTTTCATCACCTCCTGCTCCTGA---CT--CAT-CTAAAGCCTTGGTTCTCACAGTGTG--GTTCA  620

Query  417  TG------CAGA--CTGCTG-----TT--TAG-------GAATTG----TGGAGCCATCCCAGAATGAGGAGTC  464
            ||      ||||  |.||||     ||  |||       |.||||    ||||          |||| |||  |
Sbjct  621  TGGAGCATCAGAATCAGCTGGGAGCTTGCTAGAAACGCAGCATTGCATTTGGA----------AATG-GGA--C  681

Query  465  T-------------------------------------------------------------------------  465
            |                                                                         
Sbjct  682  TAGAAGATTTAGAGATGCTGAAATAATTAGAAGCAGTTTTTAAAAAGATAAAGGGCTCTGGAAGATTCCCAGTT  755

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct  756  ATAACAAAATAAATAATCCAAACCTGCAGCTGATTGGGACATGCAGCCCTCTGGTTTACCCAGTAGGGTTAGGG  829

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct  830  ATGGATCTTGTCCCAGCCTCAGTCTCATTCCCGCTGTGAACTTGTAGGCTTTGCTCCTGCTGTTCTCAGGAACA  903

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct  904  AAGCTGTCATGGCCATCACACACAACGTACCTGAGGCAGCGCTCGGATGGACGTGACACCAGCCTGGTCTTGTG  977

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct  978  CTGTCTGGACAGTGTAGCTACTGGGGCTGCCCCTGGGGAGCTGGAGGCAAGCCCAGACCACTAATTTCCTCTGA  1051

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct 1052  AAGCTGCCTACACCCATAGCCGTATTGGCCAGGACCAGTCCCAGGGGCCAGAGGCGGATTATTGCCTCCAGGAG  1125

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct 1126  CCTGGTCTGCAGCGGCGAGGTGCTCAGGGAACAGGGAGCTTGAGAGAAGTGTTTTTCTTCCACACCATCCAGCT  1199

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct 1200  CTTTAGCAGCAAGGCAGGCCATTCTGATCTTAAAAAGCAAATATCCCTTTATAGCTTTAGATTTATCTAGCCCT  1273

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct 1274  CTTAGCAGAAAATGGAAATCAAAACTATCTTTAACAAATCATCTTAACAAGGTGAACTGAAGGCACCTGGTTGC  1347

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct 1348  AAACAGCTGGCTGCCCTGAACCAAACTGGTTCCATATGCCACAAGTCTATACACCCCAGGCAACTGTGCTTAGG  1421

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct 1422  CCTTACATATGCTACTTGAAAACAAGATAAGAGTCCATCAAGATATAACTGATATGCCATAAAACCCAGTCTTC  1495

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct 1496  TAAAGTGTACATCCCAGAGTTTGGTATATTCCCAGAGTTGCTTATACCACTCTTCACCTACATAACCACCCTGC  1569

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct 1570  AGGGTAGGTGTTACTGTGCCCACTGCATACATGAGGAATATGAGGCTCAGAGAGGCTAAACAACCTGCCCAAGG  1643

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct 1644  CCACCTGCATTGCAGTGGCAGAGCCAGCATTCCCACTCGGGTCCATCTGGTCCCCAAAATTGATCCACTGCCCA  1717

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct 1718  CCCCGACTTCTTGGGTCTTACTTACTCTCCACTTCTGCCATGCACGCTTGATGACTGTGGCAGCTGCATGCAGC  1791

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct 1792  CTCTGGATGTGTTTCCGAGTTAACCAGGAACGAATGGCTAAGAGGTTTGCCCAGAAACAGGAAAGAGATAATAA  1865

Query  466  --------------------------------------------------------------------------  465
                                                                                      
Sbjct 1866  AGGGGCCATTAGAGCTGTCAGTGACCTCGCTGCAGCAGCACCACAGTTGCTGTCAAAGTTTCAAATACGTTTTT  1939

Query  466  -----------------------------------------  465
                                                     
Sbjct 1940  TTTTTTTCAATAAATTGCTACAAATAAGGTTCTAAAATCAA  1980

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