Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02158
- Subject:
- XR_001746421.1
- Aligned Length:
- 2937
- Identities:
- 1241
- Gaps:
- 1620
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTCCTTTCATTCCCGCTCCTACCGAGATGCCGGGAAAGCACTCCCGCGCCGATGCGAGGTGATACTCTCTGGA 74
Query 1 ------------------------------ATGATACTCCTGGTAAACCTCTTTGTGCTGCTCTCTGTGGTTTG 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATCATAGGATTAACAACTTGGAAAAGGCCTATGATACTCCTGGTAAACCTCTTTGTGCTGCTCTCTGTGGTTTG 148
Query 45 TGTCCTCTTAAATCTAGCTGGATTTATCCTAGGCTGCCAAGGGGCCCAGTTTGTGTCCAGCGTGCCCAGGTGTG 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TGTCCTCTTAAATCTAGCTGGATTTATCCTAGGCTGCCAAGGGGCCCAGTTTGTGTCCAGCGTGCCCAGGTGTG 222
Query 119 ATCTGGTGGACTTAGGTGAAGGCAAGATTTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGCACAGACAAA 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ATCTGGTGGACTTAGGTGAAGGCAAGATTTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGCACAGACAAA 296
Query 193 GAAAATGCCTTGAAACTCTTTCCGGTTCAGCCCTGTAGTGCTGTTCACCTTCTACTTAAGAAAGTCCTCTTTGC 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAAAATGCCTTGAAACTCTTTCCGGTTCAGCCCTGTAGTGCTGTTCACCTTCTACTTAAGAAAGTCCTCTTTGC 370
Query 267 CCTGTGTGCCTTGAATGCCCTGACCACCACCGTCTGCTTGGTGGCCGCTGCCCTCCGCTACCTCCAGATATTCG 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCTGTGTGCCTTGAATGCCCTGACCACCACCGTCTGCTTGGTGGCCGCTGCCCTCCGCTACCTCCAGATATTCG 444
Query 341 CAACCAGGAGATCCTGCATCGATGAATCCCAGATTTCTGCTGAAGAAGCGGAGGATCATGGACGCATCCCCGAC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CAACCAGGAGATCCTGCATCGATGAATCCCAGATTTCTGCTGAAGAAGCGGAGGATCATGGACGCATCCCCGAC 518
Query 415 CCTGATGATTTTGTGCCGCCTGTGCCTCCCCCTTCCTATTTTGCCACGTTTTACTCGTGCACACCCCGGATGAA 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCTGATGATTTTGTGCCGCCTGTGCCTCCCCCTTCCTATTTTGCCACGTTTTACTCGTGCACACCCCGGATGAA 592
Query 489 CCGCAGGATGGTTGGTCCTGATGTTATTCCCCTGCCACACATCTACGGAGCTCGAATCAAAGGTGTGGAAGTGT 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCGCAGGATGGTTGGTCCTGATGTTATTCCCCTGCCACACATCTACGGAGCTCGAATCAAAGGTGTGGAAGTGT 666
Query 563 TCTGTCCTCTGGATCCCCCGCCGCCATATGAAGCTGTGGTGAGCCAGATGGACCAGGAGCAGGGATCTTCATTC 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCTGTCCTCTGGATCCCCCGCCGCCATATGAAGCTGTGGTGAGCCAGATGGACCAGGAGCAGGGATCTTCATTC 740
Query 637 CAAATGTCAGAAGGATCAGAAGCTGCTGTGATCCCATTGGATCTGGGCTGCACACAAGTGACTCAAGATGGGGA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CAAATGTCAGAAGGATCAGAAGCTGCTGTGATCCCATTGGATCTGGGCTGCACACAAGTGACTCAAGATGGGGA 814
Query 711 CATTCCTAACATACCTGCCGAAGAAAATGCATCCACCTCAACTCCCAGTTCAACCCTGGTGCGTCCTATCAGAA 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CATTCCTAACATACCTGCCGAAGAAAATGCATCCACCTCAACTCCCAGTTCAACCCTGGTGCGTCCTATCAGAA 888
Query 785 GCCGGAGAGCCCTCCCACCCTTGAGGACCAGGTCGAAGAGTGACCCTGTGCTCCATCCTTCTGAGGAGAGAGCT 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 889 GCCGGAGAGCCCTCCCACCCTTGAGGACCAGGTCGAAGAGTGACCCTGTGCTCCATCCTTCTGAGGAGAGAGGT 962
Query 859 G--------CCCCAGTGCTC-------AGCTGTGAAGC-----TGCAACACAGACTGAAAGGAGAC-------- 904
| ||||| .|||| .|||||| .|| ||| || |||||||.|
Sbjct 963 GATGTCATTCCCCA-AGCTCTTCGCAGGGCTGTG-TGCTTATTTGC--------CT-AAAGGAGCCAGGTGAAG 1025
Query 905 -----TGGATCTGG-------------CTGCAGT-------GAC-TCTG-AGGAGAGGCT--TGAGATCTAGAG 949
|||.||||| ||||||| |.| |.|| |||| ||| ||||.|||.|.|
Sbjct 1026 GCAGGTGGCTCTGGCCAGCTCAGGACCCTGCAGTTTAAGTGGTCATTTGAAGGA---GCTTATGAGGTCTTGGG 1096
Query 950 -------------CTTCG-CGATG-CAG------------ACCGCGGTCTTTGATAGAT--TA----------- 983
||.|| |.||| .|| ||| ..||||||.|..||| ||
Sbjct 1097 AAAGTAAAATATTCTACGTCCATGTTAGGAATATATATCTACC-ATGTCTTTTAAGGATGGTAGGGTTTTTTTG 1169
Query 984 -----------------------CAAA-------------------------------TCCTAC---------- 993
|||| |.||||
Sbjct 1170 TTTTTTTTTAAAGTCATTGTCATCAAAAGAATTTGGTTGTACATGATACTATGCTAGGTACTACATGAAGACAA 1243
Query 994 --ATGGACACCAAGCTGCTGGTGGCGAGGT-------TCCT---GGA----GCAGT------------------ 1033
|||.|||||.|| |.|||.|..|.||.| |||| ||| |||.|
Sbjct 1244 TTATGCACACCTAG-TTCTGATTTCTAGATGCTGCAATCCTATAGGAATATGCATTGTCTTAAAAAAAGTCAAA 1316
Query 1034 -----------------CCTCTTGTACCA--------------------------------------------- 1045
||||||.||..|
Sbjct 1317 AGGATTTTTGTATACTCCCTCTTTTATAATTTGTTATATTTTTACTATGTATGAGTAGATGATTGAATTATTGA 1390
Query 1046 ----TGAC--------------------------------------CCCAGACATCCATGAAC----------- 1066
|||| ||||.||| ||..||
Sbjct 1391 AATCTGACCTTGTTTTTAGAACTTTGGATAGAATGAAGTACACGCACCCACACA---ATTCACCTCTCTCTCTG 1461
Query 1067 --TTG--------TAGA----------------AAACATTAAA--------TCTG---TTTTGAAATCTG---- 1099
||| |||| |||.|||||| .||| |||| ||||
Sbjct 1462 TGTTGTTTGTGTATAGATGTTACCTGAATAATTAAAAATTAAAATAATAACACTGACTTTTT----TCTGAATA 1531
Query 1100 -ATGA-----GGAGCA----------------CATGG-----------------------------AGGAAG-- 1120
|||| .||.|| |||.| ||||||
Sbjct 1532 TATGAATACCTGAACATCTCTAAATATCTCTTCATTGTAGAAAATTATAAAAAATAAAGAAACTAAAGGAAGAA 1605
Query 1121 -----------------------CCATCAC---------------AAGT------GC-CAGTT----------- 1138
|||.||| |||| || .||||
Sbjct 1606 AATTAAAATCTCCTGTAACTCCACCAGCACCAGCTTCTTCTTGTGAAGTAGTCTAGCAGAGTTGACCTCTGCTG 1679
Query 1139 TTCTAGAACA-------------------GATAAT---------------------GGCC----------CCAT 1162
|||||.|||| |||||| ||.| ||.|
Sbjct 1680 TTCTAAAACACCTATGCAAATAAAACTTTGATAATCCTCCACCCTGCTCTCTCTAAGGTCCTGTCTTGAGCCCT 1753
Query 1163 TGCAG-CCCAG-------------------------------CACATC-CAGGGCCCACAAGCTGC-------- 1195
||||| |.||| ||||.| |.||.|..||.|..|||
Sbjct 1754 TGCAGTCTCAGTTCTGGCTCTCTGACAGTGTGTGTTATTTGCCACAGCTCTGGACTGACCATGTGCGAGCCAGA 1827
Query 1196 ---------CCTC----------------------GCGGAGA-------------------------------- 1206
|||| |.|||||
Sbjct 1828 GAGAACATTCCTCTTGTCTCTACAGCAGCTTCTAAGTGGAGAGGAAGTCCTGCCGCCTGGTACTGAGCGTGTCT 1901
Query 1207 -------------------CAGCCTGGC---------------------------------CTGCTGCAC---- 1224
||||||||| ||.||.|||
Sbjct 1902 CTGAAACACAGTGGCCAGGCAGCCTGGCTTCTGATTCCCAAGACCTGCCTTCACTGTGGGTCTCCTACACCCTA 1975
Query 1225 ----------------CTCCAG---------------AGCTG------CGGC-----GA--------------- 1241
|||||| ||||| |.|| ||
Sbjct 1976 CCTGGCAAGTTGAGGACTCCAGCCTCAACGGGAACTTAGCTGTTTGCACAGCTTAGGGAAATCTTTCCAGAACC 2049
Query 1242 CCTTCACA-CCTTCACACCAGCGGGG---AG----GC-----CCCGAGCC-------GAGAGGAGGCCCC---- 1291
|||||.|| .||.||.|||.|||||| || || |..||||| |.| |.||||.||
Sbjct 2050 CCTTCTCATTCTGCAGACCTGCGGGGGCAAGAACAGCAGCTGCTGGAGCCCTCCATTGTG-GAAGGCGCCAGGT 2122
Query 1292 ------------GGCGAGTGGAG--GCTGAGC---GGCCACAC---AGCCTCATTGGGGTCATCCGAG------ 1339
|..|||||||| .|||| | |.||.||| ||..||.|||| ||||
Sbjct 2123 TGCCTTCAAGTGGAAGAGTGGAGACCCTGA-CTCTGTCCTCACACGAGTGTCTTTGG-------CGAGTGCTTC 2188
Query 1340 ----AGA------CTGTCCTG----------------------------------------------------- 1350
||| |||| |||
Sbjct 2189 TGGAAGACTCTTGCTGT-CTGTGACGTGCATATGGCTGCCTGAGAGGACAGTCTCGAATCCTGGTTTAGAGCTC 2261
Query 1351 -------------------------------------------------------------------------- 1350
Sbjct 2262 CCCACACCTGCCTTTCTCCAGAAGAAAGGGGGTGCTCCCCTTCTTCCACCTGCTCTCTCGCCCCCTGCTTCTTG 2335
Query 1351 -------------------------------------------------------------------------- 1350
Sbjct 2336 TCTTCTTTGAATTTCTAAATTGCTGCTTATCAGGCCTTCATAGACTGAAGATGCCAATGTTGTGTATGCTGAAG 2409
Query 1351 -------------------------------------------------------------------------- 1350
Sbjct 2410 GCTGCTGGCTGACTTCTGGACACATAATGACCAGATCTGAGTTTTGCTTCACACACTTCACAGTGCAGAAGCAT 2483
Query 1351 -------------------------------------------------------------------------- 1350
Sbjct 2484 TGCTGGTCTTTACACCCTTGCTGATATAGGCAGCCATGGAAATTAGAGCCTGCAGTGGATTTCCCAGGCTCTCT 2557
Query 1351 -------------------------------------------------------------------------- 1350
Sbjct 2558 GTTGACTTCCAGAATGATGTGTACTTTTTCTGCACCTAAATTTCTCTTTTGGTAATAGCTATAGATCTACCTCA 2631
Query 1351 -------------------------------------------------------------------------- 1350
Sbjct 2632 TATCCATGGTGTGAGCATCGATAACACAAGTCAGTACAACGTCCTTGAGGACGTTTGGGACAAAGCTGCCCCAG 2705
Query 1351 -------------------------------------------------------------------------- 1350
Sbjct 2706 TGCTCAGCTGTGAAGCTGCAACACAGACTGAAAGGAGACTGGATCTGGCTGCAGTGACTCTGAGGAGAGGCTTG 2779
Query 1351 -------------------------------------------------------------------------- 1350
Sbjct 2780 AGATCTAGAGCTTCGCGATGCAGACCGCGGTCTTTGATAGATTACAAATCCTACATGGACACCAAGCTGCTGGT 2853
Query 1351 --------------------------------------------------- 1350
Sbjct 2854 GGCGAGGTTCCTGGAGCAGTCCTCTTGTACCATGACCCCAGACATCCATGA 2904
