Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02173
- Subject:
- XR_001743757.2
- Aligned Length:
- 3352
- Identities:
- 825
- Gaps:
- 2527
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGACTTGTGGTGCGCTGCCAGGGCTCCGCAGCGTTGCCGGTTGTATTCGCTGGATACCAGAGGGCGGAAGTGCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAGGGTTCAGCTCCGACCTCCGCGCCGGTGCTTTTTGCGGCTGCGCGGGCTTCCTGGAGTCCTGCTACCGCGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCCGCAGGACAGTGTGTCAGGCGGGCAGCTTGCCCCGCCGCCCCACCGGAGCGCGGAATCTGGGCGTCCCCAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGTGCGGGGAGCCGGAAGGAGGAGCCATAGCTTGGAGTAGGTTTGGCTTTGGTTGAAATAAGAATTTAGCCTG 296
Query 1 --------------------------ATGACAGATGACAAAGATGTGCTTCGAGATGTGTGGTTTGGACGAATT 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TATGTACTGCTTTAACTCCTGGAAGAATGACAGATGACAAAGATGTGCTTCGAGATGTGTGGTTTGGACGAATT 370
Query 49 CCAACTTGTTTCACGCTATATCAGGATGAGATAACTGAAAGGGAAGCAGAACCATACTATTTGCTTTTGCCAAG 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCAACTTGTTTCACGCTATATCAGGATGAGATAACTGAAAGGGAAGCAGAACCATACTATTTGCTTTTGCCAAG 444
Query 123 AGTAAGTTATTTGACGTTGGTAACTGACAAAGTGAAAAAGCACTTTCAGAAGGTTATGAGACAAGAAGACATTA 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGTAAGTTATTTGACGTTGGTAACTGACAAAGTGAAAAAGCACTTTCAGAAGGTTATGAGACAAGAAGACATTA 518
Query 197 GTGAGATATGGTTTGAATATGAAGGCACACCACTGAAATGGCATTATCCAATTGGTTTGCTATTTGATCTTCTT 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GTGAGATATGGTTTGAATATGAAGGCACACCACTGAAATGGCATTATCCAATTGGTTTGCTATTTGATCTTCTT 592
Query 271 GCATCAAGTTCAGCTCTTCCTTGGAACATCACAGTACATTTTAAGAGTTTTCCAGAAAAAGACCTTCTGCACTG 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCATCAAGTTCAGCTCTTCCTTGGAACATCACAGTACATTTTAAGAGTTTTCCAGAAAAAGACCTTCTGCACTG 666
Query 345 TCCATCTAAGGATGCAATTGAAGCTCATTTTATGTCATGTATGAAAGAAGCTGATGCTTTAAAACATAAAAGTC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TCCATCTAAGGATGCAATTGAAGCTCATTTTATGTCATGTATGAAAGAAGCTGATGCTTTAAAACATAAAAGTC 740
Query 419 AAGTAATCAATGAAATGCAGAAAAAAGATCACAAGCAACTCTGGATGGGATTGCAAAATGACAGATTTGACCAG 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAGTAATCAATGAAATGCAGAAAAAAGATCACAAGCAACTCTGGATGGGATTGCAAAATGACAGATTTGACCAG 814
Query 493 TTTTGGGCCATCAATCGGAAACTCATGGAATATCCTGCAGAAGAAAATGGATTTCGTTATATCCCCTTTAGAAT 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TTTTGGGCCATCAATCGGAAACTCATGGAATATCCTGCAGAAGAAAATGGATTTCGTTATATCCCCTTTAGAAT 888
Query 567 ATATCAG------------------------------------------------------------------- 573
|||||||
Sbjct 889 ATATCAGGTCACAGCAGTGTGGGTGGGAATCCAGAGGTTCCAAGCTAGTGAGGAAGAAAGTGAAGATGAGGAGT 962
Query 574 -----------------------------------------------------------------------ACA 576
|||
Sbjct 963 TCTTGGCTACCCTAACTGGTGGCGAGCGTTCTGGAAAAGCTCGCAAACAGTGGACGCAGTGAGTCCACAATACA 1036
Query 577 ACGACTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCAGATGGACAGTTGCACACACTAGGAGA 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ACGACTGAAAGACCTTTCATTCAGAAGCTGTTTCGTCCTGTGGCTGCAGATGGACAGTTGCACACACTAGGAGA 1110
Query 651 TCTCCTCAAAGAAGTTTGTCCTTCTGCTATTGATCCTGAAGATGGGGAAAAAAAGAATCAAGTGATGATTCATG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TCTCCTCAAAGAAGTTTGTCCTTCTGCTATTGATCCTGAAGATGGGGAAAAAAAGAATCAAGTGATGATTCATG 1184
Query 725 GAATTGAGCCAATGTTGGAAACACCTCTGCAGTGGCTGAGTGAACATCTGAGCTACCCGGATAATTTTCTTCAT 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GAATTGAGCCAATGTTGGAAACACCTCTGCAGTGGCTGAGTGAACATCTGAGCTACCCGGATAATTTTCTTCAT 1258
Query 799 ATTAGTATCATCCCACAGCCAACAGAT----------------------------------------------- 825
|||||||||||||||||||||||||||
Sbjct 1259 ATTAGTATCATCCCACAGCCAACAGATTGAAGGATCAACTATTTGCCTGAACAGAATCATCCTTAAATGGGATT 1332
Query 826 -------------------------------------------------------------------------- 825
Sbjct 1333 TATCAGAGCATGTCACCCTTTTGCTTCAATCAGGTTTGGTGGAGGCAACCTGACCAGAAACACTTCGCTGCTGC 1406
Query 826 -------------------------------------------------------------------------- 825
Sbjct 1407 AAGCCAGACAGGAAAAAGATTCCATGTCAGATAAGGCAACTGGGCTGGTCTTACTTTGCATCACCTCTGCTTTC 1480
Query 826 -------------------------------------------------------------------------- 825
Sbjct 1481 CTCCACTGCCATCATTAAACCTCAGCTGTGACATGAAAGACTTACCGGACCACTGAAGGTCTTCTGTAAAATAT 1554
Query 826 -------------------------------------------------------------------------- 825
Sbjct 1555 AATGAAGCTGAAACCTTTGGCCTAAGAAGAAAATGGAAGTATGTGCCACTCGATTTGTATTTCTGATTAACAAA 1628
Query 826 -------------------------------------------------------------------------- 825
Sbjct 1629 TAAACAGGGGTATTTCCTAAGGTGACCATGGTTGAACTTTAGCTCATGAAAGTGGAAACATTGGTTTAATTTTC 1702
Query 826 -------------------------------------------------------------------------- 825
Sbjct 1703 AAGAGAATTAAGAAAGTAAAAGAGAAATTCTGTTATCAATAACTTGCAAGTAATTTTTTGTAAAAGATTGAATT 1776
Query 826 -------------------------------------------------------------------------- 825
Sbjct 1777 ACAGTAAACCCATCTTTCCTTAACGAAAATTTCCTATGTTTACAGTCTGTCTATTGGTATGCAATCTTGTAACT 1850
Query 826 -------------------------------------------------------------------------- 825
Sbjct 1851 TTGATAATGAACAGTGAGAGATTTTTAAATAAAGCCTCTAAATATGTTTTGTCATTTAATAACATACAGTTTTG 1924
Query 826 -------------------------------------------------------------------------- 825
Sbjct 1925 TCACTTTTCAAGTACTTTCTGACTCACATACAGTAGATCACTTTTTACTCTGTGTTACCATTTTGACTGGTCGT 1998
Query 826 -------------------------------------------------------------------------- 825
Sbjct 1999 CATTGGCATGGGGTGGATATAGGGCATAGGATTACTTGTCTCAGAAGCTGTCATAGAATTTCTTGCTGCCAATT 2072
Query 826 -------------------------------------------------------------------------- 825
Sbjct 2073 AAAAAACCTGTGTTCTTTACACACTACACGTATAAATATTGTAACTGTTCATCTTTGTTGTTTTATCACTGTAA 2146
Query 826 -------------------------------------------------------------------------- 825
Sbjct 2147 GCCTGTCAAATCATAGTATCCTAAGCATCTGTAAATGCTAATTTTGCATTTTTGGAAAAACCCATTCCTTCCAA 2220
Query 826 -------------------------------------------------------------------------- 825
Sbjct 2221 GCTAGTGTTTTTCATTGGCTCCAGGTCTAATTTTTCACTGTGGTCCCTGGCAGCCAGTCTTTTGAAGTTTAAAG 2294
Query 826 -------------------------------------------------------------------------- 825
Sbjct 2295 ATTACCTGTCTCTTGACTGCAGTACCTTTTCTTTAATTTTTACCAAAAATATCCAGAGGTTACTGGAGTTCTTA 2368
Query 826 -------------------------------------------------------------------------- 825
Sbjct 2369 TTCAATATAAGGAAAGTTTGCTGCACTTTATTACCAAGCCTCTGGGATTTTACCAGTCAAACATATTTGTGCAT 2442
Query 826 -------------------------------------------------------------------------- 825
Sbjct 2443 TACATTTCATTTCTTGTGAGCTAGCTGGCTGTCCATATTGAATGTTGACCCATTTGAGTACGCTAAAAGGCTTA 2516
Query 826 -------------------------------------------------------------------------- 825
Sbjct 2517 CAGTATCAGACACGATCATGGTTTTAGATCCCATAATAAAAATGAATGTTTTTCTTATAAAAAATTATACAAAT 2590
Query 826 -------------------------------------------------------------------------- 825
Sbjct 2591 GCTGAAGTGAGATTCTACTATTGTTCATTGCTTCCTTTTCTTTTTCCTTTTGCGATTTTCACTGATTAATAGCA 2664
Query 826 -------------------------------------------------------------------------- 825
Sbjct 2665 CATTTCTTCACAAAATTAGATAAAGTTGGTCAAAGACCAGATATTCTGGAATGGAAATTGTAAAGCTTAATCAA 2738
Query 826 -------------------------------------------------------------------------- 825
Sbjct 2739 AAAGAATAGCCAGTACAGCATACAATCTCAGAAACTTAGAAGCAAGTAGAAAATAATTGGTTGATGTAAACGAA 2812
Query 826 -------------------------------------------------------------------------- 825
Sbjct 2813 AGTGCCATTTTAGTAAAGGCAGGAAAAAAATAGCAATATTTGAGTTATGTAAGGATAAAAAATCCACTGACTTG 2886
Query 826 -------------------------------------------------------------------------- 825
Sbjct 2887 TATTTTTGCACAAGAGGCTGGTCTGAATATGATTGTTCACATTAAGAGTGTTTATTCGTCGGTTCATTTTGGGG 2960
Query 826 -------------------------------------------------------------------------- 825
Sbjct 2961 ATTTTCCCCCTTGATGTTTTGACAGATTGAAGTGAGCTTTAGTGAGCAAAAGGATCAGAATGCAGGGAACACTA 3034
Query 826 -------------------------------------------------------------------------- 825
Sbjct 3035 AGCTGTGATGAAGAAAGTGTGGTAAAAAGCCAGAGTAGTTTTATACAGACAAAACCAGTGTCAGGCCTTTGCAG 3108
Query 826 -------------------------------------------------------------------------- 825
Sbjct 3109 TAGGCTTGAGTGAACTTCTGATCTAGATTTGAAAGTAAATTTTATGAAGACATTGCCCATTTTTACTTCCTCAT 3182
Query 826 -------------------------------------------------------------------------- 825
Sbjct 3183 TCATTATTGTACCAGCATCATAGCTTTATTACTCTAATCCCAGGTAAGTCAAGCCTACAATGCCCTAGAGGAAG 3256
Query 826 -------------------------------------------------------------------------- 825
Sbjct 3257 AGTAAAACCAGAAATTCATGCTGGCTTAAATAATCTATTTTTGTTTCTTTTCATTTGAATATTTAAATTTTATG 3330
Query 826 ---------------------- 825
Sbjct 3331 GTTTATTAAAAAATTAAATAAA 3352
