Nucleotide Global Alignment

Description

• Query: ccsbBroad304_02232
• Subject: XR_001737552.2
• Aligned Length: 4105
• Identities: 2227
• Gaps: 1878

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTTCACTTTGTAACTTTTAAGTGGTCGGAACACGCCCCGCGCTGCTGGGTCCCGCCAGACACGCCGCCGCCGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGGAAAGTCTACAGTTTGGTACCCCAGGACTCGCTGGTCAGGAAAGCCCTGCAGGACATGAGTGTTAGGCCCGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGCCTGGCCCTTGGCAGCTTGGGAGGTGGCTGGGGCTGCTTTTGCCTTTGCCAGAGACAGCTCCAACTGAGGAC  222

Query    1  -----------------------------------------------------------ATGATGGACTCCCCG  15
                                                                       |||||||||||||||
Sbjct  223  CTCTCCAACGGGCCCATCCACAGTCCTTCCTTCCCCTAGTGTCTGGGAAGACAGGCGCGATGATGGACTCCCCG  296

Query   16  TTCCTGGAGCTGTGGCAGTCCAAGGCAGTGTCCATCAGGGAGCAGCTGGGACTCGGGGACCGGCCCAACGACTC  89
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TTCCTGGAGCTGTGGCAGTCCAAGGCAGTGTCCATCAGGGAGCAGCTGGGACTCGGGGACCGGCCCAACGACTC  370

Query   90  CTATTGCTACAACTCGGCCAAAAACAGCACCGTGCTCCAGGGGGTCACCTTTGGTGGCATCCCCACTGTCCTGC  163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CTATTGCTACAACTCGGCCAAAAACAGCACCGTGCTCCAGGGGGTCACCTTTGGTGGCATCCCCACTGTCCTGC  444

Query  164  TCATAGACGTCAGCTGCTTCCTGTTCTTAATCTTGGTGTTTTCTATTATAAGAAGAAGATTCTGGGACTATGGC  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCATAGACGTCAGCTGCTTCCTGTTCTTAATCTTGGTGTTTTCTATTATAAGAAGAAGATTCTGGGACTATGGC  518

Query  238  CGCATTGCCCTGGTGTCAGAAGCAGACAGCGAGTCCAGATTTCAGAGATTGTCATCGACTTCCTCCTCAGGTCA  311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CGCATTGCCCTGGTGTCAGAAGCAGACAGCGAGTCCAGATTTCAGAGATTGTCATCGACTTCCTCCTCAGGTCA  592

Query  312  ACAAGACTTTGAAAATGAGCTGGGATGCTGTCCCTGGCTGACTGCCATCTTCCGTCTGCATGATGACCAGATCC  385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACAAGACTTTGAAAATGAGCTGGGATGCTGTCCCTGGCTGACTGCCATCTTCCGTCTGCATGATGACCAGATCC  666

Query  386  TGGAATGGTGTGGGGAGGACGCCATCCACTACCTGTCCTTCCAGAGGCACATCATCTTCCTGTTGGTGGTGGTC  459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TGGAATGGTGTGGGGAGGACGCCATCCACTACCTGTCCTTCCAGAGGCACATCATCTTCCTGTTGGTGGTGGTC  740

Query  460  AGCTTTTTGTCCCTGTGTGTCATCCTGCCTGTCAACCTCTCAGGGGACTTGCTGGACAAAGACCCGTATAGTTT  533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGCTTTTTGTCCCTGTGTGTCATCCTGCCTGTCAACCTCTCAGGGGACTTGCTGGACAAAGACCCGTATAGTTT  814

Query  534  TGGGAGGACAACAATAGCAAACCTACAGACTGACAATGACCTCCTTTGGCTGCACACCATCTTTGCTGTCATTT  607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGGGAGGACAACAATAGCAAACCTACAGACTGACAATGACCTCCTTTGGCTGCACACCATCTTTGCTGTCATTT  888

Query  608  ACCTCTTCCTCACTGTGGGTTTCATGCGGCACCACACTCAGTCCATTAAGTACAAAGAGGAGAACCTGGTGAGG  681
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACCTCTTCCTCACTGTGGGTTTCATGCGGCACCACACTCAGTCCATTAAGTACAAAGAGGAGAACCTGGTGAGG  962

Query  682  CGGACCCTGTTCATCACAGGACTCCCCAGAGATGCCAGGAAGGAGACTGTGGAGAGCCACTTCCGGGACGCGTA  755
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CGGACCCTGTTCATCACAGGACTCCCCAGAGATGCCAGGAAGGAGACTGTGGAGAGCCACTTCCGGGACGCGTA  1036

Query  756  TCCCACGTGTGAGGTGGTTGATGTGCAGCTGTGCTACAACGTGGCCAAACTGATCTACCTGTGCAAGGAGAAAA  829
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TCCCACGTGTGAGGTGGTTGATGTGCAGCTGTGCTACAACGTGGCCAAACTGATCTACCTGTGCAAGGAGAAAA  1110

Query  830  AGAAGACTGAGAAGAGCCTGACCTATTACACAAACCTGCAGGTGAAGACAGGCCAGCGGACCCTCATCAACCCC  903
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AGAAGACTGAGAAGAGCCTGACCTATTACACAAACCTGCAGGTGAAGACAGGCCAGCGGACCCTCATCAACCCC  1184

Query  904  AAGCCCTGTGGCCAGTTTTGCTGCTGTGAAGTGCTGGGCTGTGAGTGGGAAGACGCCATCTCTTACTACACACG  977
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AAGCCCTGTGGCCAGTTTTGCTGCTGTGAAGTGCTGGGCTGTGAGTGGGAAGACGCCATCTCTTACTACACACG  1258

Query  978  GATGAAGGACAGGCTGCTGGAGAGGATCACAGAGGAAGAACGCCACGTCCAGGACCAGCCCCTGGGAATGGCCT  1051
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GATGAAGGACAGGCTGCTGGAGAGGATCACAGAGGAAGAACGCCACGTCCAGGACCAGCCCCTGGGAATGGCCT  1332

Query 1052  TCGTCACCTTCCAGGAGAAGTCCATGGCCACCTACATCCTGAAAGATTTCAATGCCTGCAAGTGTCAGAGCCTT  1125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TCGTCACCTTCCAGGAGAAGTCCATGGCCACCTACATCCTGAAAGATTTCAATGCCTGCAAGTGTCAGAGCCTT  1406

Query 1126  CAGTGCAAAGGTGAGCCCCAGCCGTCCTCCCATAGCAGGGAGCTCTATACCTCCAAGTGGACAGTCACCTTTGC  1199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CAGTGCAAAGGTGAGCCCCAGCCGTCCTCCCATAGCAGGGAGCTCTATACCTCCAAGTGGACAGTCACCTTTGC  1480

Query 1200  TGCTGACCCTGAGGACATCTGCTGGAAGAACCTCTCTATCCAGGGCCTCCGCTGGTGGCTACAGTGGCTGGGCA  1273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGCTGACCCTGAGGACATCTGCTGGAAGAACCTCTCTATCCAGGGCCTCCGCTGGTGGCTACAGTGGCTGGGCA  1554

Query 1274  TCAACTTCACCCTCTTCCTGGGGCTATTTTTCCTGACCACACCCTCCATCATCCTGTCCACCATGGACAAGTTT  1347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TCAACTTCACCCTCTTCCTGGGGCTATTTTTCCTGACCACACCCTCCATCATCCTGTCCACCATGGACAAGTTT  1628

Query 1348  AATGTCACCAAACCCATCCATGCGCTGAATAACCCGATCATCAGCCAGTTCTTCCCCACCCTCCTGCTCTGGTC  1421
            ||||||||||||||||||||||||||||||                                            
Sbjct 1629  AATGTCACCAAACCCATCCATGCGCTGAAT--------------------------------------------  1658

Query 1422  CTTCTCGGCCCTGCTCCCCTCCATTGTCTACTACTCTACACTGCTGGAGTCTCACTGGACCAAGTCGGGGGAAA  1495
                                                                                      
Sbjct 1659  --------------------------------------------------------------------------  1658

Query 1496  ACCAGATCATGATGACCAAAGTCTACATATTCTTGATCTTCATGGTGCTGATCCTGCCCTCCCTGGGTCTCACC  1569
                                                                                      
Sbjct 1659  --------------------------------------------------------------------------  1658

Query 1570  AGTCTAGATTTTTTCTTCCGGTGGCTCTTTGACAAAACTTCCTCGGAGGCCTCCATCAGGTTGGAGTGCGTCTT  1643
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659  --TCTAGATTTTTTCTTCCGGTGGCTCTTTGACAAAACTTCCTCGGAGGCCTCCATCAGGTTGGAGTGCGTCTT  1730

Query 1644  CCTGCCTGACCAGGGTGCCTTCTTTGTGAACTATGTCATCGCCTCGGCCTTCATCGGCAATGGCATGGAGCTGC  1717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731  CCTGCCTGACCAGGGTGCCTTCTTTGTGAACTATGTCATCGCCTCGGCCTTCATCGGCAATGGCATGGAGCTGC  1804

Query 1718  TGCGGCTGCCAGGTCTCATCCTCTATACCTTCCGCATGATCATGGCCAAGACGGCTGCTGACCGCAGGAATGTC  1791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1805  TGCGGCTGCCAGGTCTCATCCTCTATACCTTCCGCATGATCATGGCCAAGACGGCTGCTGACCGCAGGAATGTC  1878

Query 1792  AAGCAGAACCAGGCCTTCCAGTACGAGTTTGGAGCCATGTATGCATGGATGCTGTGTGTCTTCACTGTCATCGT  1865
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879  AAGCAGAACCAGGCCTTCCAGTACGAGTTTGGAGCCATGTATGCATGGATGCTGTGTGTCTTCACTGTCATCGT  1952

Query 1866  GGCCTACAGCATCACTTGTCCCATCATCGCGCCATTTGGCCTCATCTACATCCTGCTCAAGCACATGGTGGACC  1939
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953  GGCCTACAGCATCACTTGTCCCATCATCGCGCCATTTGGCCTCATCTACATCCTGCTCAAGCACATGGTGGACC  2026

Query 1940  GGCACAACCTCTACTTCGTCTACCTCCCAGCCAAGCTGGAGAAGGGGATCCACTTTGCCGCTGTGAACCAGGCC  2013
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2027  GGCACAACCTCTACTTCGTCTACCTCCCAGCCAAGCTGGAGAAGGGGATCCACTTTGCCGCTGTGAACCAGGCC  2100

Query 2014  TTGGCAGCCCCCATCCTGTGCCTCTTCTGGCTCTACTTCTTTTCCTTCCTGCGCCTGGGTATGAAGGCCCCCGC  2087
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101  TTGGCAGCCCCCATCCTGTGCCTCTTCTGGCTCTACTTCTTTTCCTTCCTGCGCCTGGGTATGAAGGCCCCCGC  2174

Query 2088  CACTCTGTTCACCTTCCTGGTGCTGCTGCTCACCATCCTGGTCTGCCTGGCTCACACCTGCTTTGGATGCTTCA  2161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2175  CACTCTGTTCACCTTCCTGGTGCTGCTGCTCACCATCCTGGTCTGCCTGGCTCACACCTGCTTTGGATGCTTCA  2248

Query 2162  AGCACCTCAGCCCTCTGAACTACAAAACAGAAGAGCCTGCAAGTGACAAAGGAAGTGAGGCAGAGGCCCACATG  2235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2249  AGCACCTCAGCCCTCTGAACTACAAAACAGAAGAGCCTGCAAGTGACAAAGGAAGTGAGGCAGAGGCCCACATG  2322

Query 2236  CCCCCACCGTTCACACCCTACGTGCCTCGGATTCTGAACGGCTTGGCCTCGGAGAGGACAGCACTGTCTCCGCA  2309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2323  CCCCCACCGTTCACACCCTACGTGCCTCGGATTCTGAACGGCTTGGCCTCGGAGAGGACAGCACTGTCTCCGCA  2396

Query 2310  GCAGCAGCAGCAGCAGACCTATGGTGCCATCCACAACATCAGCGGGACTATCCCTGGACAGTGCTTGGCGCAGA  2383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2397  GCAGCAGCAGCAGCAGACCTATGGTGCCATCCACAACATCAGCGGGACTATCCCTGGACAGTGCTTGGCGCAGA  2470

Query 2384  GCGCCACGGGCAGTGTGGCTGCTGCCCCCCAGGAGGCC------------------------------------  2421
            ||||||||||||||||||||||||||||||||||||||                                    
Sbjct 2471  GCGCCACGGGCAGTGTGGCTGCTGCCCCCCAGGAGGCCTGAGGCTGGGTCTCACTGCTCTGAAAAGACACAACC  2544

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 2545  AGAATGGCCTGGGGCTCAGGCCCTTGGCTGAGTGGGAATGCGTTGGGACTGCCCAGCTGAGCTATCAGGTGCCC  2618

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 2619  ATCTTTTCTGGTCCCAGCAGTGGTGAGGAGAGCACAGGCAGGCCTCGCCCCTCCCTTGCTCACCCAGTTTCCCC  2692

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 2693  TCCGGCACAAGCTTCCAGCTCTGCAGCTGGGGTGACATCCCCAGTGGTTTGTCGCCAAGACCATGTGGTGGACT  2766

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 2767  TTTCGCCCCCCAAACTGATGAGTCCGGGAGAATATATGGAGAGAGAGATGTAACAAGGGGAAGGCCTCCTCCCT  2840

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 2841  TCTGAGCACACACACAACCGATAACCAAAGAGATGCTGCAGTCCAGGTCTGAGGTCCCGCTGGCATCCAGCTCC  2914

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 2915  CTGCTCCATGGCCAGTCCCTCCCCAGCCCAGCAGTCCCTCCAGGCTACATCCAGGAGTAAGCTATGGGGAACAG  2988

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 2989  GTTGGGAGGTGGCCAGTGCTCCTGCCAGCTGTGCACACATCTCTGTATCCCGCTAGAGTTCTGTGTTTTTGTAT  3062

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 3063  CATGTTGTCAGGGACGCTAGCTGGGTCAGGGTTACCCCATAGCAGGCAGGGACAAGGACCACTCATAATATGCC  3136

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 3137  CATTGGACCACAGTTAAGATCCAGCCTCTCTCACCTCTTCAGGGCTGAGTGCATGAGTCTGCACCTCCAGGCAG  3210

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 3211  GCTCTGTGCAGTACTCACCCCCTCCGTCTGCTCCCTCCAAGGTGTGGGGGTGGGCAGTGCTCAGGGCCTCCTCG  3284

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 3285  GAGCCAAAGGACAGCATGGTCGGCACAGAGGAAGGGGTACCTGGGCTGGGTGCAGGGCCATCCCACTGCCCTTG  3358

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 3359  AGCTGTGGCTCTGGCAGGAAGGAGGGGCAGCCCATCCCTCTTCTCCCTCCTGGGGATTCTGGGGAATGGGATGC  3432

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 3433  AACTTAAGACTTCTGCCTGAGAAGCCTCCTCCCTGCTGCCTCCAGGGGGCACCAAGGCACAAGCCTGTGCAGTA  3506

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 3507  GGGGCGGGATGGGGGTGTGGAAGAGCAGGTCCAGGCTCCTAGCACAACTGGCCTGGGGCCTTGGCACCTCTGTA  3580

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 3581  GGCCCTGCCTGTGCCTGTCCGCTGGCCTGGGGGGCCTGGGCTTATCTGGGCCTTCTCACTCAGGGACTCTCTTG  3654

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 3655  ACGCTGACTTGCCCCCGCAGTGGTGGCCAGTGCTGCCTCTGCTCCAAGCTGCCCCTGCGCTGGGAGGGGTGGGG  3728

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 3729  GCGGTGCCATTGGTCTGGTGCAGCATAGCCCTGGCCAGTGGCCTCATCCCCAGCAGGCCTCCCGTGCCTCTGCC  3802

Query 2422  --------------------------------------------------------------------------  2421
                                                                                      
Sbjct 3803  AGCAAGGAGGGGCCGGCCAGCTCTGCTTGCACAGGGGGCCCCATGTGGGGTCAGCGCACGCTCATGTCACTGAG  3876

Query 2422  -----------------------------------  2421
                                               
Sbjct 3877  TTCCAGCCGCTTTTAGAGTAAAGTCGTTTATCATC  3911