Nucleotide Global Alignment

Description

Query:
ccsbBroad304_02266
Subject:
NM_001350907.2
Aligned Length:
2088
Identities:
1728
Gaps:
360

Alignment

Query    1  ATGGACGCTGACATGGACTACGAAAGACCCAACGTTGAAACTATCAAATGTGTGGTCGTGGGTGACAATGCCGT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GGGGAAGACGCGCTTGATCTGTGCCAGGGCGTGCAACACCACACTCACGCAGTATCAGCTGCTGGCCACCCACG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TGCCAACAGTGTGGGCGATTGACCAGTACCGCGTGTGCCAGGAGGTCTTGGAGCGTTCTCGGGATGTTGTTGAT  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GAAGTGAGTGTTTCTCTCAGGCTTTGGGATACTTTTGGTGATCATCACAAAGACAGACGCTTTGCATATGGCAG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GTCTGATGTTGTGGTCCTCTGTTTTTCGATTGCTAATCCCAATTCCCTAAATCATGTGAAAAGCATGTGGTATC  370
                                                                            ||||||||||
Sbjct    1  ----------------------------------------------------------------ATGTGGTATC  10

Query  371  CAGAAATCAAGCACTTTTGCCCTCGAACACCCGTTATCCTTGTTGGGTGCCAGCTTGATCTCCGCTATGCCGAC  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   11  CAGAAATCAAGCACTTTTGCCCTCGAACACCCGTTATCCTTGTTGGGTGCCAGCTTGATCTCCGCTATGCCGAC  84

Query  445  CTGGAAGCTGTTAATCGAGCCAGGCGCCCGTTAGCAAGGCCCATAAAGAGAGGGGATATTTTGCCCCCAGAAAA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   85  CTGGAAGCTGTTAATCGAGCCAGGCGCCCGTTAGCAAGGCCCATAAAGAGAGGGGATATTTTGCCCCCAGAAAA  158

Query  519  AGGCCGAGAGGTAGCAAAGGAACTTGGCTTACCATACTATGAAACAAGCGTGTTTGACCAGTTTGGTATCAAGG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  159  AGGCCGAGAGGTAGCAAAGGAACTTGGCTTACCATACTATGAAACAAGCGTGTTTGACCAGTTTGGTATCAAGG  232

Query  593  ATGTGTTTGACAATGCAATCCGAGCAGCGCTGATTTCCCGCAGGCACCTGCAATTCTGGAAATCCCACCTAAAG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  233  ATGTGTTTGACAATGCAATCCGAGCAGCGCTGATTTCCCGCAGGCACCTGCAATTCTGGAAATCCCACCTAAAG  306

Query  667  AAAGTCCAGAAACCTTTACTTCAGGCACCCTTCCTACCTCCAAAAGCCCCTCCACCGGTCATCAAAATTCCAGA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  307  AAAGTCCAGAAACCTTTACTTCAGGCACCCTTCCTACCTCCAAAAGCCCCTCCACCGGTCATCAAAATTCCAGA  380

Query  741  GTGTCCTTCCATGGGGACAAATGAAGCTGCCTGTTTACTGGACAATCCTCTATGTGCCGATGTTCTGTTCATCC  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  381  GTGTCCTTCCATGGGGACAAATGAAGCTGCCTGTTTACTGGACAATCCTCTATGTGCCGATGTTCTGTTCATCC  454

Query  815  TTCAGGACCAGGAACACATCTTTGCACATCGAATTTACCTCGCTACCTCTTCTTCCAAATTTTATGATCTGTTT  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  455  TTCAGGACCAGGAACACATCTTTGCACATCGAATTTACCTCGCTACCTCTTCTTCCAAATTTTATGATCTGTTT  528

Query  889  TTAATGGAATGTGAAGAATCCCCAAATGGGAGTGAAGGAGCCTGTGAGAAAGAGAAGCAGAGCAGAGATTTCCA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  529  TTAATGGAATGTGAAGAATCCCCAAATGGGAGTGAAGGAGCCTGTGAGAAAGAGAAGCAGAGCAGAGATTTCCA  602

Query  963  GGGGCGGATATTGAGTGTCGACCCAGAGGAAGAAAGGGAGGAGGGCCCGCCTAGGATTCCTCAGGCCGACCAGT  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  603  GGGGCGGATATTGAGTGTCGACCCAGAGGAAGAAAGGGAGGAGGGCCCGCCTAGGATTCCTCAGGCCGACCAGT  676

Query 1037  GGAAGTCTTCAAACAAGAGCCTGGTGGAGGCTCTGGGGCTGGAAGCCGAGGGTGCAGTTCCTGAGACACAGACT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  677  GGAAGTCTTCAAACAAGAGCCTGGTGGAGGCTCTGGGGCTGGAAGCCGAGGGTGCAGTTCCTGAGACACAGACT  750

Query 1111  TTGACCGGATGGAGTAAGGGGTTCATTGGCATGCACAGGGAAATGCAAGTCAACCCCATTTCAAAGCGGATGGG  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  751  TTGACCGGATGGAGTAAGGGGTTCATTGGCATGCACAGGGAAATGCAAGTCAACCCCATTTCAAAGCGGATGGG  824

Query 1185  GCCCATGACTGTGGTCAGGATGGACGCTTCAGTCCAGCCAGGCCCTTTTCGGACCCTGCTCCAGTTTCTTTATA  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  825  GCCCATGACTGTGGTCAGGATGGACGCTTCAGTCCAGCCAGGCCCTTTTCGGACCCTGCTCCAGTTTCTTTATA  898

Query 1259  CGGGACAACTGGATGAAAAGGAAAAGGATTTGGTGGGCCTGGCTCAGATCGCAGAGGTCCTCGAGATGTTCGAT  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  899  CGGGACAACTGGATGAAAAGGAAAAGGATTTGGTGGGCCTGGCTCAGATCGCAGAGGTCCTCGAGATGTTCGAT  972

Query 1333  TTGAGGATGATGGTGGAAAACATCATGAACAAGGAAGCCTTCATGAACCAGGAGATTACGAAAGCCTTTCACGT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  973  TTGAGGATGATGGTGGAAAACATCATGAACAAGGAAGCCTTCATGAACCAGGAGATTACGAAAGCCTTTCACGT  1046

Query 1407  AAGGAAAGCCAATCGGATAAAAGAGTGTCTCAGCAAGGGAACGTTCTCGGACGTGACATTTAAATTGGACGATG  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047  AAGGAAAGCCAATCGGATAAAAGAGTGTCTCAGCAAGGGAACGTTCTCGGACGTGACATTTAAATTGGACGATG  1120

Query 1481  GAGCCATCAGTGCCCACAAGCCGCTGCTGATCTGTAGCTGTGAGTGGATGGCAGCCATGTTCGGGGGGTCATTT  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121  GAGCCATCAGTGCCCACAAGCCGCTGCTGATCTGTAGCTGTGAGTGGATGGCAGCCATGTTCGGGGGGTCATTT  1194

Query 1555  GTGGAAAGTGCCAACAGTGAGGTGTATCTCCCGAACATAAACAAGATATCAATGCAAGCAGTATTGGATTATCT  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195  GTGGAAAGTGCCAACAGTGAGGTGTATCTCCCGAACATAAACAAGATATCAATGCAAGCAGTATTGGATTATCT  1268

Query 1629  CTATACCAAGCAGTTGTCTCCTAACTTGGATCTGGACCCGCTGGAATTAATTGCCTTGGCAAACAGATTTTGCC  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269  CTATACCAAGCAGTTGTCTCCTAACTTGGATCTGGACCCGCTGGAATTAATTGCCTTGGCAAACAGATTTTGCC  1342

Query 1703  TGCCACACTTGGTTGCACTTGCAGAACAGCATGCCGTTCAGGAGTTGACCAAAGCCGCCACGAGTGGCGTGGGC  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343  TGCCACACTTGGTTGCACTTGCAGAACAGCATGCCGTTCAGGAGTTGACCAAAGCCGCCACGAGTGGCGTGGGC  1416

Query 1777  ATTGACGGAGAAGTGCTCTCTTACTTGGAATTGGCTCAGTTTCACAATGCCCACCAGTTGGCCGCCTGGTGTTT  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417  ATTGACGGAGAAGTGCTCTCTTACTTGGAATTGGCTCAGTTTCACAATGCCCACCAGTTGGCCGCCTGGTGTTT  1490

Query 1851  GCACCACATCTGCACCAACTACAACAGTGTATGCTCCAAGTTCCGTAAGGAAATCAAATCAAAATCTGCAGACA  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491  GCACCACATCTGCACCAACTACAACAGTGTATGCTCCAAGTTCCGTAAGGAAATCAAATCAAAATCTGCAGACA  1564

Query 1925  ACCAGGAATACTTCGAGCGGCACCGCTGGCCCCCTGTGTGGTACCTGAAGGAAGAAGATCACTACCAGCGTGTG  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565  ACCAGGAATACTTCGAGCGGCACCGCTGGCCCCCTGTGTGGTACCTGAAGGAAGAAGATCACTACCAGCGTGTG  1638

Query 1999  AAAAGGGAACGAGAGAAGGAAGATATTGCACTAAATAAGCATCGCTCAAGACGAAAGTGGTGCTTCTGGAATTC  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639  AAAAGGGAACGAGAGAAGGAAGATATTGCACTAAATAAGCATCGCTCAAGACGAAAGTGGTGCTTCTGGAATTC  1712

Query 2073  ATCTCCAGCAGTGGCC  2088
            ||||||||||||||||
Sbjct 1713  ATCTCCAGCAGTGGCC  1728

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