Nucleotide Global Alignment

Description

• Query: ccsbBroad304_02266
• Subject: XR_945894.2
• Aligned Length: 4509
• Identities: 2088
• Gaps: 2421

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACAAAGCCCGCGCCAGCCTCGGCCGCCCGGCGGGACCCAGAGCCGCCGCGGGAGCTTCCAGCGTCCCCAGGTTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TATAATAATCAAGAAGCACATGAAAGAGGCCTCTTCATCAAGCATTCTTGACTAAGTTATGAAAATGGAATTGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGTTTATTTTCCCCCTTCATATGGTAAGTCCAGCTGTGAGCAGAGTGTTCTGTTCTTCACTTCCAGCAAGCCAG  222

Query    1  ----------ATGGACGCTGACATGGACTACGAAAGACCCAACGTTGAAACTATCAAATGTGTGGTCGTGGGTG  64
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AGTTTCATAAATGGACGCTGACATGGACTACGAAAGACCCAACGTTGAAACTATCAAATGTGTGGTCGTGGGTG  296

Query   65  ACAATGCCGTGGGGAAGACGCGCTTGATCTGTGCCAGGGCGTGCAACACCACACTCACGCAGTATCAGCTGCTG  138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ACAATGCCGTGGGGAAGACGCGCTTGATCTGTGCCAGGGCGTGCAACACCACACTCACGCAGTATCAGCTGCTG  370

Query  139  GCCACCCACGTGCCAACAGTGTGGGCGATTGACCAGTACCGCGTGTGCCAGGAGGTCTTGGAGCGTTCTCGGGA  212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GCCACCCACGTGCCAACAGTGTGGGCGATTGACCAGTACCGCGTGTGCCAGGAGGTCTTGGAGCGTTCTCGGGA  444

Query  213  TGTTGTTGATGAAGTGAGTGTTTCTCTCAGGCTTTGGGATACTTTTGGTGATCATCACAAAGACAGACGCTTTG  286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TGTTGTTGATGAAGTGAGTGTTTCTCTCAGGCTTTGGGATACTTTTGGTGATCATCACAAAGACAGACGCTTTG  518

Query  287  CATATGGCAGGTCTGATGTTGTGGTCCTCTGTTTTTCGATTGCTAATCCCAATTCCCTAAATCATGTGAAAAGC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CATATGGCAGGTCTGATGTTGTGGTCCTCTGTTTTTCGATTGCTAATCCCAATTCCCTAAATCATGTGAAAAGC  592

Query  361  ATGTGGTATCCAGAAATCAAGCACTTTTGCCCTCGAACACCCGTTATCCTTGTTGGGTGCCAGCTTGATCTCCG  434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ATGTGGTATCCAGAAATCAAGCACTTTTGCCCTCGAACACCCGTTATCCTTGTTGGGTGCCAGCTTGATCTCCG  666

Query  435  CTATGCCGACCTGGAAGCTGTTAATCGAGCCAGGCGCCCGTTAGCAAGGCCCATAAAGAGAGGGGATATTTTGC  508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CTATGCCGACCTGGAAGCTGTTAATCGAGCCAGGCGCCCGTTAGCAAGGCCCATAAAGAGAGGGGATATTTTGC  740

Query  509  CCCCAGAAAAAGGCCGAGAGGTAGCAAAGGAACTTGGCTTACCATACTATGAAACAAGCGTGTTTGACCAGTTT  582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CCCCAGAAAAAGGCCGAGAGGTAGCAAAGGAACTTGGCTTACCATACTATGAAACAAGCGTGTTTGACCAGTTT  814

Query  583  GGTATCAAGGATGTGTTTGACAATGCAATCCGAGCAGCGCTGATTTCCCGCAGGCACCTGCAATTCTGGAAATC  656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GGTATCAAGGATGTGTTTGACAATGCAATCCGAGCAGCGCTGATTTCCCGCAGGCACCTGCAATTCTGGAAATC  888

Query  657  CCACCTAAAGAAAGTCCAGAAACCTTTACTTCAGGCACCCTTCCTACCTCCAAAAGCCCCTCCACCGGTCATCA  730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CCACCTAAAGAAAGTCCAGAAACCTTTACTTCAGGCACCCTTCCTACCTCCAAAAGCCCCTCCACCGGTCATCA  962

Query  731  AAATTCCAGAGTGTCCTTCCATGGGGACAAATGAAGCTGCCTGTTTACTGGACAATCCTCTATGTGCCGATGTT  804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AAATTCCAGAGTGTCCTTCCATGGGGACAAATGAAGCTGCCTGTTTACTGGACAATCCTCTATGTGCCGATGTT  1036

Query  805  CTGTTCATCCTTCAGGACCAGGAACACATCTTTGCACATCGAATTTACCTCGCTACCTCTTCTTCCAAATTTTA  878
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CTGTTCATCCTTCAGGACCAGGAACACATCTTTGCACATCGAATTTACCTCGCTACCTCTTCTTCCAAATTTTA  1110

Query  879  TGATCTGTTTTTAATGGAATGTGAAGAATCCCCAAATGGGAGTGAAGGAGCCTGTGAGAAAGAGAAGCAGAGCA  952
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TGATCTGTTTTTAATGGAATGTGAAGAATCCCCAAATGGGAGTGAAGGAGCCTGTGAGAAAGAGAAGCAGAGCA  1184

Query  953  GAGATTTCCAGGGGCGGATATTGAGTGTCGACCCAGAGGAAGAAAGGGAGGAGGGCCCGCCTAGGATTCCTCAG  1026
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GAGATTTCCAGGGGCGGATATTGAGTGTCGACCCAGAGGAAGAAAGGGAGGAGGGCCCGCCTAGGATTCCTCAG  1258

Query 1027  GCCGACCAGTGGAAGTCTTCAAACAAGAGCCTGGTGGAGGCTCTGGGGCTGGAAGCCGAGGGTGCAGTTCCTGA  1100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GCCGACCAGTGGAAGTCTTCAAACAAGAGCCTGGTGGAGGCTCTGGGGCTGGAAGCCGAGGGTGCAGTTCCTGA  1332

Query 1101  GACACAGACTTTGACCGGATGGAGTAAGGGGTTCATTGGCATGCACAGGGAAATGCAAGTCAACCCCATTTCAA  1174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GACACAGACTTTGACCGGATGGAGTAAGGGGTTCATTGGCATGCACAGGGAAATGCAAGTCAACCCCATTTCAA  1406

Query 1175  AGCGGATGGGGCCCATGACTGTGGTCAGGATGGACGCTTCAGTCCAGCCAGGCCCTTTTCGGACCCTGCTCCAG  1248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AGCGGATGGGGCCCATGACTGTGGTCAGGATGGACGCTTCAGTCCAGCCAGGCCCTTTTCGGACCCTGCTCCAG  1480

Query 1249  TTTCTTTATACGGGACAACTGGATGAAAAGGAAAAGGATTTGGTGGGCCTGGCTCAGATCGCAGAGGTCCTCGA  1322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TTTCTTTATACGGGACAACTGGATGAAAAGGAAAAGGATTTGGTGGGCCTGGCTCAGATCGCAGAGGTCCTCGA  1554

Query 1323  GATGTTCGATTTGAGGATGATGGTGGAAAACATCATGAACAAGGAAGCCTTCATGAACCAGGAGATTACGAAAG  1396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GATGTTCGATTTGAGGATGATGGTGGAAAACATCATGAACAAGGAAGCCTTCATGAACCAGGAGATTACGAAAG  1628

Query 1397  CCTTTCACGTAAGGAAAGCCAATCGGATAAAAGAGTGTCTCAGCAAGGGAACGTTCTCGGACGTGACATTTAAA  1470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CCTTTCACGTAAGGAAAGCCAATCGGATAAAAGAGTGTCTCAGCAAGGGAACGTTCTCGGACGTGACATTTAAA  1702

Query 1471  TTGGACGATGGAGCCATCAGTGCCCACAAGCCGCTGCTGATCTGTAGCTGTGAGTGGATGGCAGCCATGTTCGG  1544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TTGGACGATGGAGCCATCAGTGCCCACAAGCCGCTGCTGATCTGTAGCTGTGAGTGGATGGCAGCCATGTTCGG  1776

Query 1545  GGGGTCATTTGTGGAAAGTGCCAACAGTGAGGTGTATCTCCCGAACATAAACAAGATATCAATGCAAGCAGTAT  1618
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GGGGTCATTTGTGGAAAGTGCCAACAGTGAGGTGTATCTCCCGAACATAAACAAGATATCAATGCAAGCAGTAT  1850

Query 1619  TGGATTATCTCTATACCAAGCAGTTGTCTCCTAACTTGGATCTGGACCCGCTGGAATTAATTGCCTTGGCAAAC  1692
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  TGGATTATCTCTATACCAAGCAGTTGTCTCCTAACTTGGATCTGGACCCGCTGGAATTAATTGCCTTGGCAAAC  1924

Query 1693  AGATTTTGCCTGCCACACTTGGTTGCACTTGCAGAACAGCATGCCGTTCAGGAGTTGACCAAAGCCGCCACGAG  1766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AGATTTTGCCTGCCACACTTGGTTGCACTTGCAGAACAGCATGCCGTTCAGGAGTTGACCAAAGCCGCCACGAG  1998

Query 1767  TGGCGTGGGCATTGACGGAGAAGTGCTCTCTTACTTGGAATTGGCTCAGTTTCACAATGCCCACCAGTTGGCCG  1840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  TGGCGTGGGCATTGACGGAGAAGTGCTCTCTTACTTGGAATTGGCTCAGTTTCACAATGCCCACCAGTTGGCCG  2072

Query 1841  CCTGGTGTTTGCACCACATCTGCACCAACTACAACAGTGTATGCTCCAAGTTCCGTAAGGAAATCAAATCAAAA  1914
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CCTGGTGTTTGCACCACATCTGCACCAACTACAACAGTGTATGCTCCAAGTTCCGTAAGGAAATCAAATCAAAA  2146

Query 1915  TCTGCAG-------------------------------------------------------------------  1921
            |||||||                                                                   
Sbjct 2147  TCTGCAGGTGAGACTGTGTGAGGCCCCCATTCATCCAGCTCTCCTCACCTCTCATGGAAGCTTTTATCTTCTAT  2220

Query 1922  --------------------------------------------------------------------------  1921
                                                                                      
Sbjct 2221  GTCCCTGGAAAGGAACATGGTCAGCAGGCAGCTCATGGATGATTCCTCGAGACTGGCTGGTGGTCACATATTAA  2294

Query 1922  -ACAACCAGGAATACTTCGAGCGGCACCGCTGGCCCCCTGTGTGGTACCTGAAGGAAGAAGATCACTACCAGCG  1994
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  TACAACCAGGAATACTTCGAGCGGCACCGCTGGCCCCCTGTGTGGTACCTGAAGGAAGAAGATCACTACCAGCG  2368

Query 1995  TGTGAAAAGGGAACGAGAGAAGGAAGATATTGCACTAAATAAGCATCGCTCAAGACGAAAGTGGTGCTTCTGGA  2068
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  TGTGAAAAGGGAACGAGAGAAGGAAGATATTGCACTAAATAAGCATCGCTCAAGACGAAAGTGGTGCTTCTGGA  2442

Query 2069  ATTCATCTCCAGCAGTGGCC------------------------------------------------------  2088
            ||||||||||||||||||||                                                      
Sbjct 2443  ATTCATCTCCAGCAGTGGCCTGAAGAGGAAGAGAAAAAAAACAAAAAACAGAAACCAATCGGTAATCTGATCCA  2516

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 2517  CCACTTTTCAAAGCACTACTATAAAATTCGTCTTGTTAGAGATACGACATAGTTCAGGTTTCGGGCACTGATCT  2590

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 2591  TCCTCCACTTTTGTGCATTTATCTTTGTTAGGATCAAAGCACAAGCTCACCATCAATGAGCCTGGACAAAAAGG  2664

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 2665  GAAGCTGACTCTCACTGCATTCCTTAAACTGATATGTATATTTTTTTTGTTAGGAGGCTTAATAAACTTTAGTC  2738

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 2739  TGTTATTTTGTTTCTTTTTATACAAAGAAAAAAAATTCAGCTTTCATGTTTCTGATTCCAGATTGGAAAATATT  2812

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 2813  TTTATATGGTCTGTTGTATTTTGTTGAAATGAAAATACTGTGTATTACTTTATTTTACAGGCCACAATTGATTA  2886

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 2887  TGAAGTCACCCTGTGATTCTCTTTGCCCACATGACCACCGAGCATTATTACGTAATTAGAGGGTTATCCTTTTG  2960

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 2961  TTGTGAAAGGAAGGAGGGGACTGAAATCTCCCAAAGTGCAAATTGGAGAGTGTTTAATCTTTGTTCTGTTGAAT  3034

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 3035  AACATCGGTGTAATTACAAAGTCAACTCCAAGAATGTGTATTTACAATATTTGCCATGTTAAGTGCTGGTAATT  3108

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 3109  ATATGGTTATATGTGCCATGTAAAATATAGTGATATCAAATATTCTGTTGTTTCCAATGTCTAGTTTCAAGAGG  3182

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 3183  ACAATCTTTATAATCATTAGAAGGGCTTATTAAATCCCAGCATTATCCAGGGCAAACTCACTGGTGGACCTGAA  3256

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 3257  TACATAAGATACCATTAGTGCGCTGGTGTTCGGATTGCTGTATTAGGGTTTACATCTCTCAGTATTCCTTGAAC  3330

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 3331  TTGCCATGCTTCTGCATGCAGATTCTTCACTGACTTGAATTGAGATGGGCAAGGGAAAAGGTCCCTGGACTCCC  3404

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 3405  TCCTGCCATCTACAGGCTTGTCACATCTCACCACCAGAAACAGGCTTCCTCAGGCTTCTCACCTGTGGCCAACT  3478

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 3479  TCACTTTGTAAGACCCATATTTTTAACTCTTCCCAGGGAAAATTCATGTTGCTGCAGAAGTAGGCTAAGGCAGA  3552

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 3553  CCACCCACTTCTGCTGAAATGCATTGGGAGCCTGTGAAAGCACAAAGCTGGAGGCTGGGCGCCTGCGTTCTCCT  3626

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 3627  ACACGGAAAGGAATCTAATTCCAAGAGTCTAGGAAATGGTGCTATTGTGAGTTCGTTCTGACTCTTTCTCATTC  3700

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 3701  TGAGTTTTCAGTGTTAAACTAGGAAGTGTGACAGCAGGGGAGCTTTCGTGAGGCAGTCAGTCATTGCTTCTCTG  3774

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 3775  TAAATTAAAATGTTACAGCACACACATACACACACAGAGAGCATTTCAAGGCCACAGCTCCACACCTGCCATGG  3848

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 3849  GATGTTAATGTGGCAGGGGGTGGGGCTCATTCTGTTGGGAGGTCAAATTACCAATGCCAAGGACTGTTGATTTT  3922

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 3923  GTTTTTATTTTTATTTTTTCTTCTAGCTTTTCAGAAGATGGAAATGAGACAGTTGAGTCCAAACCCCAATGCTG  3996

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 3997  ACAGCCATATGCATTTGAAAATCTATCTAGATTACAGATGGGCATTTATTACTGGCAGTGGAAACACCAGATAG  4070

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 4071  AAGATCTTAGGAGAGGCCCAGAAATGCATCACCTTGTCATGACAAAAGAGAAGGCAGTAGAGTAGGGATAGTTA  4144

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 4145  CAAATGCATCCATCTTAATTATTTTCAATAGGCTTGTAAATCTTATCGATGGAAGGAGAAAGGAGACAAGATGT  4218

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 4219  GGAAGAATTGACATGTATCCCACCATAAAATGGTAGAAGATGAGTTTTCAATGAGTAGTCATAGTTGAAATTTT  4292

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 4293  ACAACCAAAGCTCCCATTTGATTGTAATCTTGCCAAAATATAATGGATGTATAAATGAACTTGGGGTATAAGCA  4366

Query 2089  --------------------------------------------------------------------------  2088
                                                                                      
Sbjct 4367  ATAATATCCACTAGTGTTGTTATCAGCTACTGTAACCAAGTGGCTGGTTCATTTGGTTGATGCTGATTATGGCC  4440

Query 2089  ---------------------------------------------------------------------  2088
                                                                                 
Sbjct 4441  TTTAACCATGGTGGTTTGTTGTGTGTTTTTTATTTCACAAAAAGCCAATAAAATTGTTTAGCTATAAAA  4509