Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02292
- Subject:
- XR_001738580.2
- Aligned Length:
- 5277
- Identities:
- 414
- Gaps:
- 4863
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCGGCGGTGCCGGCGGCGGCGGGCGCAGAGCGCGAGGGGAGGAGCGGGAGGAGGCGGAGGATGTTCCCGGCGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCGGCCGGGGCAGCGCGGGCCAGAGGCGCGGCGTGCGGAGCCCTCGGCTGCCCGGCGGAGCGCGGCGGCGGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGGCGGGAAGGCGCGGGCTTTGCGCTGCGCCGGGGACTCTGAACCCGAGTCCCGGGCTTTGTCTCCTGCGCTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTTCGTGGTGACGGTCAGGGGGCGCCCGGTCGGCGAAGGGCGCGGGCCGGACGCCGCGGGGCTTGGTCCCTGGC 296
Query 1 ----------------------------------------------ATGGCAAAGCAACCTTCTGATGTAAGTT 28
||||||||||||||||||||||||||||
Sbjct 297 CCGGACGCTGCGCTCTGAAGGGAAGGCGCGGACAAAAAAAGACCAAATGGCAAAGCAACCTTCTGATGTAAGTT 370
Query 29 CTGAGTGTGACCGAGAAGGTAGACAATTGCAGCCTGCGGAGAGGCCTCCCCAGCTCAGACCTGGGGCCCCTACC 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTGAGTGTGACCGAGAAGGTAGACAATTGCAGCCTGCGGAGAGGCCTCCCCAGCTCAGACCTGGGGCCCCTACC 444
Query 103 TCCCTACAGACAGAGCCACAAGGTAATCCTGAAGGCAATCACGGAGGTGAAGGGGACAGCTGCCCCCACGGCAG 176
||||||||||||||||||||
Sbjct 445 TCCCTACAGACAGAGCCACA------------------------------------------------------ 464
Query 177 CCCTCAGGGCCCGCTGGCCCCACCTGCCAGCCCTGGCCCTTTTGCTACCAGATCCCCGCTTTTCATCTTTATGA 250
Sbjct 465 -------------------------------------------------------------------------- 464
Query 251 GAAGATCCTCCCTGCTGTCTCGATCCTCCAGTGGGTATTTCTCTTTTGACACAGACAGGAGCCCAGCACCCATG 324
||||||||||||||||||||||
Sbjct 465 ----------------------------------------------------AGACAGGAGCCCAGCACCCATG 486
Query 325 AGTTGTGACAAATCAACACAAACCCCAAGTCCTCCTTGCCAGGCCTTCAACCACTATCTCAGTGCAATGGCTTC 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 AGTTGTGACAAATCAACACAAACCCCAAGTCCTCCTTGCCAGGCCTTCAACCACTATCTCAGTGCAATGGCTTC 560
Query 399 CATGAGGCAGGCTGAACCTGCAGATATGCGCCCAGAGATATGGATCGCCCAAGAGTTGCGGCGTATTGGAGACG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CATGAGGCAGGCTGAACCTGCAGATATGCGCCCAGAGATATGGATCGCCCAAGAGTTGCGGCGTATTGGAGACG 634
Query 473 AGTTTAACGCTTACTATGCAAGGAG------------------------------------------------- 497
|||||||||||||||||||||||||
Sbjct 635 AGTTTAACGCTTACTATGCAAGGAGGTTAGAGAAATAGAGGAAGTTGTCGTGTAGTTGTCATGTATTCAGTCCA 708
Query 498 -------------------------------------------------------------------------- 497
Sbjct 709 CTTAAGGGCAGTGGGGAAGCGTTTGAGACGGAGCTGTGGAGGCTGAATCCTTGAAGGAGGAGGTGAGAGAGGCA 782
Query 498 --GGTATTTTTGAATAATTACCAAGCAGCCGAAGACCACCCACGAATGGTTATCTTACGACTGTTACGTTACAT 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CAGGTATTTTTGAATAATTACCAAGCAGCCGAAGACCACCCACGAATGGTTATCTTACGACTGTTACGTTACAT 856
Query 570 TGTCCGCCTGGTGTGGAGAATGCAT------------------------------------------------- 594
|||||||||||||||||||||||||
Sbjct 857 TGTCCGCCTGGTGTGGAGAATGCATTGACAGGTTCTTTGCGGAGCCGAGATACCATGCAGACATTTTGCTTGTT 930
Query 595 -------------------------------------------------------------------------- 594
Sbjct 931 CAAACCAACAAGACCCAGCACCGCGGTCTCCTGGTGCCATTATTATGCAGCCAGCGGTTCTCTTGTGGAGGGGG 1004
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1005 CAGGTGACGTTTCAGAAGACACCGAGCTGGATGGGACTACCTTTCTGTTCATCACCACACAGCAGAATTTCTAA 1078
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1079 TGGAAGTTTGTTGTGAATGTAAAGGAGGGAGCATTCTTTGCTTTTTAATATACAAACCATGGTTTTTTGGAGCA 1152
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1153 GGATTTTGTGTAAGAATGGTGTTTACATGCAGTGTGTTTTCCCCCTCACCTTCAATAAGGTTTTTCAAAAAGGA 1226
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1227 AATGGAAACTTTTTAACCAATTTGTGAATAACTTTTGTATTAAAATTTTAAGAACCTACGGCCTATTCTCAGAG 1300
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1301 GATTATGTAACCCCTGCAGTGGAAACTGAGCCAGCTAACTTAAAAAGCTGCCTTAGTTTATTTTTAGAGATTAC 1374
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1375 AGAATTTTTAAACAGGGAGACGTGTGATATACTCCCTCCCTTCCCTACTATTGCCTCTCTGACCTTTTTAAATT 1448
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1449 ATTTTTAATACCAAAAGAGTTCTTTTGAAATGGAACTGATTAAAAGGGCAGAGGGTCTGTTGCCAGCCTGCATT 1522
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1523 GATATACCAGTCCCATTTGTAAATATTTACGTACCTTTATAAATTCAGTTGCATCTGTGGCAAAATTTCAGACT 1596
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1597 ATTTTTGCGTCTTTCCTCATCACTTTTTGTGATGCAACTCCAGTCTGGACTCAGATGCATAGATTTGGTCCAGT 1670
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1671 GTATTTTCATGATAAAGTGAAATTGAGTCAGAACAAGAGTTAATATCTGCCTGTATCTTGCACAGTTCGAGCGA 1744
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1745 TCTGTTATTAACTGGGAAGCATTTGGTGTTGGTTTTCATTCCATTTCGACGAGCATGTTATTGGGAAGTATTCT 1818
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1819 GAAGAGGCAATAGCAGTAATAACAACAGACTTAAGTGCTACGCCCCTTTGTGCTGCTGGCTTTTCTGGTTGCAG 1892
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1893 GCTTTCCCATGGTCACAGGATGCACTGTCAGCATCAGGTCCCAGAGGGCCACCGTGTCCATTACAGCAGAGTCC 1966
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1967 AGCTGCAGCATCCAGCTCACGCCCTCATGGGAATTGGCACAGGCCTGGGGCAGGGCTTCTGATGGCCATTTGCT 2040
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2041 TGGCCTCCTGCATTTTAGTCCAACTCACAGTCCACTAGCTTCACTCCTTTAAATTCACTTTGAAACAGGCCTCA 2114
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2115 TCCCACTTCCACCAGCACCATAGAAGAATAATTCTGGGCAGAAGTCTGTTTTTTTTCATTTTTCCAGGACAGTT 2188
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2189 GGATATTGTCAGGCCACTTGTGACCCCAGCCATGTAGTGAGGGTGCTCTTTCTCTGTGCCTGCTCCTTATGAGT 2262
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2263 GCAGTGGAAGGAAGCCACACACTGGTCAGTCATTTCAGAGGCAGCAGATGCCCAGGGAGACCCAAGAAAGAGTC 2336
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2337 AGGTTAGGGAGCAGTGAAAGTGAGGAGGGAAGACAATTCTGTGAACTCTGTAACTCTTAAAATTTTTGAAAACT 2410
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2411 CCATCGTTAAACAACTTTTAAAAGAAATAACTAAATTTTCAAATGAGTAAGCAGTGCCACCAACTAGTGTTTTG 2484
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2485 CCCGATAGAAGAGCCAGCATGTTCACGTTATTTAAATTAGGTGGAAAAATCTAAACATTTTTATCTTCATAATT 2558
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2559 TAAAAAATATATATGTATATATTGCATATTCACTTTTTCCTTTAGGTAGAGATGATTTCAATCCAAATACTCTT 2632
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2633 ACTTTAAAAAATTTCCTTTCCCCAAGAATCTCCTTGGGACTTTGACTTATTTTTAAAGCTGTGTTGGAGCTCAT 2706
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2707 CTTGTTCCCTGATGTGTCTCGAGCCCATTGGTAGGGTCATACAAAGCCCACGGTTACAAGCAGTGGTAGGATTG 2780
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2781 CAGCCGTGGGCCTGCTGGACACACACATACACCAAAGATGTATTTGGATCTGGGCACCCCCTCCCAGGATCCCT 2854
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2855 GTACTCACGTGCCAGTCTCCTGACTAGAGCACTTTACTCTGTTTCCTCAGCCCTGCAGCCCCTGGGAGCACACA 2928
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2929 CTGGGTGCAGCCCTGGGCCAGGCACGGGAGGCCCTGCCCTGTGCTGCCCAGGGGCTGTGTGCACCACATGAGCA 3002
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3003 CATTTCCCTCTGGCCTGGCGGCCTCCAGGCTGGCTGTGGAAACAGTTCCTGAGGAAATTAGAGATTCTATGAAT 3076
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3077 TGTAGGAGTATTAAAGACCAGGCTGTTGGCACCAGAACTTAAAGCGATGACTGGATGTCTCTGTACTGTATGTA 3150
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3151 TCTGGTTATCAAGATGCCTCTGTGCAGAAAGTATGCCTCCCGTGGGTATACGTTTTTACCTTTTTTAAAAAACA 3224
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3225 TTTTTGTAGAAAAAATAATTAAATCCCCTTTTTGGAAACTTACTGCAGGTTTTGTGCCTTGACAACCTCTCCCT 3298
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3299 ATGTGAGGTTTGTAAAAAGTGTCCTGTGACTTAACACAGAAACGCAATAAACACACACAAAATAGTTTCATGAG 3372
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3373 TGATTCTTCAGATGCCCTTCCCAACTGGTTAGTTGATCAAGAATTTTGGGGGTGGGGGTTGCGGAGAAATCAAG 3446
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3447 TTTAAAATTCCTTCTGATTAAAAAAATATAGTGGAATACAATTGTCTGCCGTTTCCCCTTCTTAATGTATATAT 3520
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3521 TGTGAGTATTTATTAGATTCGTAGGTCATATTACTTATCAACTGAGCCAAATGTCTGTGTGCAATTGTGTTTCC 3594
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3595 TTTACCTTGTAAAATTTTGTACAGCATAAATAAGTAAAAAAATCACTGTTTTTCTCAACTTTTTCAAAATCAAG 3668
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3669 GATTGTAAATATTGTAGATTCTTTTTCTGTGTGATGTGTCCTACTGTTTCATAATGCTGTAACTTGTAGAAATA 3742
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3743 TTGTATATTTATTTTCTGCTTATTTAATGTCTTAATTTCTGAAAAGTATTAACATCCCTGTCTCCCACTCCCCT 3816
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3817 GCCGTCCCATGAAGTTAACTCCTGAGAGTTGTCGGGGGTGACTGGAGAGCTCATTGCAGACCACGTGGTCCTCC 3890
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3891 AGGGTGGCTCTCCACCTTCGGGTCCTGGTATTTCCAGTCAAGTGGGTTTCAATTCTTGGGCTTTGCCGCCCTTA 3964
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3965 TGATGAAGTGTGTGTTTGATGCCAGTGAGAAACTCAGTCTGGCAGGCTACAAAATTCTACTCCAAGAAATACCC 4038
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4039 AGCAACCTTCTGTTTGTTCCAAAGCAACTAGCTTATCATGCAAGCAAATTTTGCTGACTCCAGGCTTTATCTTT 4112
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4113 AGGAAAACAAAAAAACCAAAGTATTATCAGCAGGTGGGAAAGATTTTTCTATTGAAAATTTATCCCTGACAACT 4186
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4187 CAGCGTTTAGAAAAGAAATAAAATGTGCCACTTCCAGAGGTGCTGCATTGCAGTTGTTCAGGGCTAGGGCCAGG 4260
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4261 CAGGACAAGTGAATGGGTGGGACAGGTGGCTCCTGCCTAAGGACCACCTCAGGCCACTAACCCCTTGTGGACAA 4334
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4335 CTGTGAGTAGCTGGGTTTTCCCCCACCTGCTGTGCAACTTCCTGTGCTTTGAGGTTGGACTAACTTGTCTTCAG 4408
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4409 GAGCTAATTAACTGTACAGCCCTCCCCACGCCCCACCCATACGGTCACTGCATTTGGTCAGCCTGCTTCTTCAG 4482
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4483 GTCGATGCCCTCCTTCTGATACTCCATCTCCTTCAGGGGAGGTTGGGGCCCCACTGGACTGGGTGTCAAGATGT 4556
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4557 GAAAGCTTATGGGAGCTTTAAGGAGACTTCATGGTGGTTCCATGCAGGTGGTTCTGCCATCCCTGCTGATTTAG 4630
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4631 CCTGGTGCCTGTGTGTGTCCACTCACGTACACGTGGGGTGGGGGAAACGTGTCTACAGATGACGCTAAATCAGT 4704
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4705 TGGGGTCTACTCTAAACAGCATTGTGTGTAAGAAGCATCCTCAAGCTCCCAGTTAAGTAACTTGACTACTTTTA 4778
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4779 TTTGGGAATTTCAGACTATAGAAGCTCTCTTATGTTTTATGTCCAGATTCTGTGACCACTAGTTACTGTATCAG 4852
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4853 AACTCATCAGGTACCCACTTATAAATAGCACTGATCTGGCTGTATACTGATCCATCACTAACCTGTTTTCTAGG 4926
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4927 ACCCAGCGTATGTAGCATTTGTATTGCAGTTTCCCTGGCTTACTTGTGTTTTGCACTGATGAATTTTGACAGGG 5000
Query 595 -------------------------------------------------------------------------- 594
Sbjct 5001 TAATTGCCACTTTACTTGTGCAATACTGCTGTAAATAACTGCAGATTTTTAAACAATCTTTTATGTTAATTTTA 5074
Query 595 ----------------------- 594
Sbjct 5075 TAAAAATAAAACTTTCAACTAGT 5097
