Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02292
- Subject:
- XR_244801.3
- Aligned Length:
- 5277
- Identities:
- 594
- Gaps:
- 4683
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCGGCGGTGCCGGCGGCGGCGGGCGCAGAGCGCGAGGGGAGGAGCGGGAGGAGGCGGAGGATGTTCCCGGCGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCGGCCGGGGCAGCGCGGGCCAGAGGCGCGGCGTGCGGAGCCCTCGGCTGCCCGGCGGAGCGCGGCGGCGGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGGCGGGAAGGCGCGGGCTTTGCGCTGCGCCGGGGACTCTGAACCCGAGTCCCGGGCTTTGTCTCCTGCGCTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTTCGTGGTGACGGTCAGGGGGCGCCCGGTCGGCGAAGGGCGCGGGCCGGACGCCGCGGGGCTTGGTCCCTGGC 296
Query 1 ----------------------------------------------ATGGCAAAGCAACCTTCTGATGTAAGTT 28
||||||||||||||||||||||||||||
Sbjct 297 CCGGACGCTGCGCTCTGAAGGGAAGGCGCGGACAAAAAAAGACCAAATGGCAAAGCAACCTTCTGATGTAAGTT 370
Query 29 CTGAGTGTGACCGAGAAGGTAGACAATTGCAGCCTGCGGAGAGGCCTCCCCAGCTCAGACCTGGGGCCCCTACC 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTGAGTGTGACCGAGAAGGTAGACAATTGCAGCCTGCGGAGAGGCCTCCCCAGCTCAGACCTGGGGCCCCTACC 444
Query 103 TCCCTACAGACAGAGCCACAAGGTAATCCTGAAGGCAATCACGGAGGTGAAGGGGACAGCTGCCCCCACGGCAG 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCCCTACAGACAGAGCCACAAGGTAATCCTGAAGGCAATCACGGAGGTGAAGGGGACAGCTGCCCCCACGGCAG 518
Query 177 CCCTCAGGGCCCGCTGGCCCCACCTGCCAGCCCTGGCCCTTTTGCTACCAGATCCCCGCTTTTCATCTTTATGA 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCCTCAGGGCCCGCTGGCCCCACCTGCCAGCCCTGGCCCTTTTGCTACCAGATCCCCGCTTTTCATCTTTATGA 592
Query 251 GAAGATCCTCCCTGCTGTCTCGATCCTCCAGTGGGTATTTCTCTTTTGACACAGACAGGAGCCCAGCACCCATG 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAAGATCCTCCCTGCTGTCTCGATCCTCCAGTGGGTATTTCTCTTTTGACACAGACAGGAGCCCAGCACCCATG 666
Query 325 AGTTGTGACAAATCAACACAAACCCCAAGTCCTCCTTGCCAGGCCTTCAACCACTATCTCAGTGCAATGGCTTC 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGTTGTGACAAATCAACACAAACCCCAAGTCCTCCTTGCCAGGCCTTCAACCACTATCTCAGTGCAATGGCTTC 740
Query 399 CATGAGGCAGGCTGAACCTGCAGATATGCGCCCAGAGATATGGATCGCCCAAGAGTTGCGGCGTATTGGAGACG 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CATGAGGCAGGCTGAACCTGCAGATATGCGCCCAGAGATATGGATCGCCCAAGAGTTGCGGCGTATTGGAGACG 814
Query 473 AGTTTAACGCTTACTATGCAAGGAG------------------------------------------------- 497
|||||||||||||||||||||||||
Sbjct 815 AGTTTAACGCTTACTATGCAAGGAGGTTAGAGAAATAGAGGAAGTTGTCGTGTAGTTGTCATGTATTCAGTCCA 888
Query 498 -------------------------------------------------------------------------- 497
Sbjct 889 CTTAAGGGCAGTGGGGAAGCGTTTGAGACGGAGCTGTGGAGGCTGAATCCTTGAAGGAGGAGGTGAGAGAGGCA 962
Query 498 --GGTATTTTTGAATAATTACCAAGCAGCCGAAGACCACCCACGAATGGTTATCTTACGACTGTTACGTTACAT 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAGGTATTTTTGAATAATTACCAAGCAGCCGAAGACCACCCACGAATGGTTATCTTACGACTGTTACGTTACAT 1036
Query 570 TGTCCGCCTGGTGTGGAGAATGCAT------------------------------------------------- 594
|||||||||||||||||||||||||
Sbjct 1037 TGTCCGCCTGGTGTGGAGAATGCATTGACAGGTTCTTTGCGGAGCCGAGATACCATGCAGACATTTTGCTTGTT 1110
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1111 CAAACCAACAAGACCCAGCACCGCGGTCTCCTGGTGCCATTATTATGCAGCCAGCGGTTCTCTTGTGGAGGGGG 1184
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1185 CAGGTGACGTTTCAGAAGACACCGAGCTGGATGGGACTACCTTTCTGTTCATCACCACACAGCAGAATTTCTAA 1258
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1259 TGGAAGTTTGTTGTGAATGTAAAGGAGGGAGCATTCTTTGCTTTTTAATATACAAACCATGGTTTTTTGGAGCA 1332
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1333 GGATTTTGTGTAAGAATGGTGTTTACATGCAGTGTGTTTTCCCCCTCACCTTCAATAAGGTTTTTCAAAAAGGA 1406
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1407 AATGGAAACTTTTTAACCAATTTGTGAATAACTTTTGTATTAAAATTTTAAGAACCTACGGCCTATTCTCAGAG 1480
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1481 GATTATGTAACCCCTGCAGTGGAAACTGAGCCAGCTAACTTAAAAAGCTGCCTTAGTTTATTTTTAGAGATTAC 1554
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1555 AGAATTTTTAAACAGGGAGACGTGTGATATACTCCCTCCCTTCCCTACTATTGCCTCTCTGACCTTTTTAAATT 1628
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1629 ATTTTTAATACCAAAAGAGTTCTTTTGAAATGGAACTGATTAAAAGGGCAGAGGGTCTGTTGCCAGCCTGCATT 1702
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1703 GATATACCAGTCCCATTTGTAAATATTTACGTACCTTTATAAATTCAGTTGCATCTGTGGCAAAATTTCAGACT 1776
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1777 ATTTTTGCGTCTTTCCTCATCACTTTTTGTGATGCAACTCCAGTCTGGACTCAGATGCATAGATTTGGTCCAGT 1850
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1851 GTATTTTCATGATAAAGTGAAATTGAGTCAGAACAAGAGTTAATATCTGCCTGTATCTTGCACAGTTCGAGCGA 1924
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1925 TCTGTTATTAACTGGGAAGCATTTGGTGTTGGTTTTCATTCCATTTCGACGAGCATGTTATTGGGAAGTATTCT 1998
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1999 GAAGAGGCAATAGCAGTAATAACAACAGACTTAAGTGCTACGCCCCTTTGTGCTGCTGGCTTTTCTGGTTGCAG 2072
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2073 GCTTTCCCATGGTCACAGGATGCACTGTCAGCATCAGGTCCCAGAGGGCCACCGTGTCCATTACAGCAGAGTCC 2146
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2147 AGCTGCAGCATCCAGCTCACGCCCTCATGGGAATTGGCACAGGCCTGGGGCAGGGCTTCTGATGGCCATTTGCT 2220
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2221 TGGCCTCCTGCATTTTAGTCCAACTCACAGTCCACTAGCTTCACTCCTTTAAATTCACTTTGAAACAGGCCTCA 2294
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2295 TCCCACTTCCACCAGCACCATAGAAGAATAATTCTGGGCAGAAGTCTGTTTTTTTTCATTTTTCCAGGACAGTT 2368
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2369 GGATATTGTCAGGCCACTTGTGACCCCAGCCATGTAGTGAGGGTGCTCTTTCTCTGTGCCTGCTCCTTATGAGT 2442
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2443 GCAGTGGAAGGAAGCCACACACTGGTCAGTCATTTCAGAGGCAGCAGATGCCCAGGGAGACCCAAGAAAGAGTC 2516
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2517 AGGTTAGGGAGCAGTGAAAGTGAGGAGGGAAGACAATTCTGTGAACTCTGTAACTCTTAAAATTTTTGAAAACT 2590
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2591 CCATCGTTAAACAACTTTTAAAAGAAATAACTAAATTTTCAAATGAGTAAGCAGTGCCACCAACTAGTGTTTTG 2664
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2665 CCCGATAGAAGAGCCAGCATGTTCACGTTATTTAAATTAGGTGGAAAAATCTAAACATTTTTATCTTCATAATT 2738
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2739 TAAAAAATATATATGTATATATTGCATATTCACTTTTTCCTTTAGGTAGAGATGATTTCAATCCAAATACTCTT 2812
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2813 ACTTTAAAAAATTTCCTTTCCCCAAGAATCTCCTTGGGACTTTGACTTATTTTTAAAGCTGTGTTGGAGCTCAT 2886
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2887 CTTGTTCCCTGATGTGTCTCGAGCCCATTGGTAGGGTCATACAAAGCCCACGGTTACAAGCAGTGGTAGGATTG 2960
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2961 CAGCCGTGGGCCTGCTGGACACACACATACACCAAAGATGTATTTGGATCTGGGCACCCCCTCCCAGGATCCCT 3034
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3035 GTACTCACGTGCCAGTCTCCTGACTAGAGCACTTTACTCTGTTTCCTCAGCCCTGCAGCCCCTGGGAGCACACA 3108
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3109 CTGGGTGCAGCCCTGGGCCAGGCACGGGAGGCCCTGCCCTGTGCTGCCCAGGGGCTGTGTGCACCACATGAGCA 3182
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3183 CATTTCCCTCTGGCCTGGCGGCCTCCAGGCTGGCTGTGGAAACAGTTCCTGAGGAAATTAGAGATTCTATGAAT 3256
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3257 TGTAGGAGTATTAAAGACCAGGCTGTTGGCACCAGAACTTAAAGCGATGACTGGATGTCTCTGTACTGTATGTA 3330
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3331 TCTGGTTATCAAGATGCCTCTGTGCAGAAAGTATGCCTCCCGTGGGTATACGTTTTTACCTTTTTTAAAAAACA 3404
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3405 TTTTTGTAGAAAAAATAATTAAATCCCCTTTTTGGAAACTTACTGCAGGTTTTGTGCCTTGACAACCTCTCCCT 3478
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3479 ATGTGAGGTTTGTAAAAAGTGTCCTGTGACTTAACACAGAAACGCAATAAACACACACAAAATAGTTTCATGAG 3552
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3553 TGATTCTTCAGATGCCCTTCCCAACTGGTTAGTTGATCAAGAATTTTGGGGGTGGGGGTTGCGGAGAAATCAAG 3626
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3627 TTTAAAATTCCTTCTGATTAAAAAAATATAGTGGAATACAATTGTCTGCCGTTTCCCCTTCTTAATGTATATAT 3700
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3701 TGTGAGTATTTATTAGATTCGTAGGTCATATTACTTATCAACTGAGCCAAATGTCTGTGTGCAATTGTGTTTCC 3774
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3775 TTTACCTTGTAAAATTTTGTACAGCATAAATAAGTAAAAAAATCACTGTTTTTCTCAACTTTTTCAAAATCAAG 3848
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3849 GATTGTAAATATTGTAGATTCTTTTTCTGTGTGATGTGTCCTACTGTTTCATAATGCTGTAACTTGTAGAAATA 3922
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3923 TTGTATATTTATTTTCTGCTTATTTAATGTCTTAATTTCTGAAAAGTATTAACATCCCTGTCTCCCACTCCCCT 3996
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3997 GCCGTCCCATGAAGTTAACTCCTGAGAGTTGTCGGGGGTGACTGGAGAGCTCATTGCAGACCACGTGGTCCTCC 4070
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4071 AGGGTGGCTCTCCACCTTCGGGTCCTGGTATTTCCAGTCAAGTGGGTTTCAATTCTTGGGCTTTGCCGCCCTTA 4144
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4145 TGATGAAGTGTGTGTTTGATGCCAGTGAGAAACTCAGTCTGGCAGGCTACAAAATTCTACTCCAAGAAATACCC 4218
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4219 AGCAACCTTCTGTTTGTTCCAAAGCAACTAGCTTATCATGCAAGCAAATTTTGCTGACTCCAGGCTTTATCTTT 4292
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4293 AGGAAAACAAAAAAACCAAAGTATTATCAGCAGGTGGGAAAGATTTTTCTATTGAAAATTTATCCCTGACAACT 4366
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4367 CAGCGTTTAGAAAAGAAATAAAATGTGCCACTTCCAGAGGTGCTGCATTGCAGTTGTTCAGGGCTAGGGCCAGG 4440
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4441 CAGGACAAGTGAATGGGTGGGACAGGTGGCTCCTGCCTAAGGACCACCTCAGGCCACTAACCCCTTGTGGACAA 4514
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4515 CTGTGAGTAGCTGGGTTTTCCCCCACCTGCTGTGCAACTTCCTGTGCTTTGAGGTTGGACTAACTTGTCTTCAG 4588
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4589 GAGCTAATTAACTGTACAGCCCTCCCCACGCCCCACCCATACGGTCACTGCATTTGGTCAGCCTGCTTCTTCAG 4662
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4663 GTCGATGCCCTCCTTCTGATACTCCATCTCCTTCAGGGGAGGTTGGGGCCCCACTGGACTGGGTGTCAAGATGT 4736
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4737 GAAAGCTTATGGGAGCTTTAAGGAGACTTCATGGTGGTTCCATGCAGGTGGTTCTGCCATCCCTGCTGATTTAG 4810
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4811 CCTGGTGCCTGTGTGTGTCCACTCACGTACACGTGGGGTGGGGGAAACGTGTCTACAGATGACGCTAAATCAGT 4884
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4885 TGGGGTCTACTCTAAACAGCATTGTGTGTAAGAAGCATCCTCAAGCTCCCAGTTAAGTAACTTGACTACTTTTA 4958
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4959 TTTGGGAATTTCAGACTATAGAAGCTCTCTTATGTTTTATGTCCAGATTCTGTGACCACTAGTTACTGTATCAG 5032
Query 595 -------------------------------------------------------------------------- 594
Sbjct 5033 AACTCATCAGGTACCCACTTATAAATAGCACTGATCTGGCTGTATACTGATCCATCACTAACCTGTTTTCTAGG 5106
Query 595 -------------------------------------------------------------------------- 594
Sbjct 5107 ACCCAGCGTATGTAGCATTTGTATTGCAGTTTCCCTGGCTTACTTGTGTTTTGCACTGATGAATTTTGACAGGG 5180
Query 595 -------------------------------------------------------------------------- 594
Sbjct 5181 TAATTGCCACTTTACTTGTGCAATACTGCTGTAAATAACTGCAGATTTTTAAACAATCTTTTATGTTAATTTTA 5254
Query 595 ----------------------- 594
Sbjct 5255 TAAAAATAAAACTTTCAACTAGT 5277
