Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02319
- Subject:
- XR_376814.3
- Aligned Length:
- 5481
- Identities:
- 1023
- Gaps:
- 4307
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGCGGATTGGCGTCTTGCGCTTGCGCAGAGAGAGCCCAGGAGCTCGGCGCGTGCGCACTGAACGCCTGCAAGAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCAGTCGGCCGCGCGGGCGCAGATCGGCTGCTTGCGGTGGTTTGAGTGGTGGCAAGTCCAGTGCTGAGAGGGGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGCAGTCTTCCGGAAAACTCTAGCGCCAAGTTCCTGAGCTTTCGGAGGCGAGGCGCGGCATGTCGTGGGTTCC 222
Query 1 -----------------------------ATGGGCCGGCGCCGGGCGCCAGAGCTGTACCGGGCTCCGTTCCCG 45
|||||.||||||||||.....||||||||||||||.|||||||||
Sbjct 223 GCGGGGTTGGCGGTGAACGTGCGGGCGGGATGGGTCGGCGCCGGGGTGTGGAGCTGTACCGGGCCCCGTTCCCG 296
Query 46 TTGTACGCGCTTCAGGTCGACCCCAGCACTGGGCTGCTCATCGCTGCGGGCGGAGGAGGCGCCGCCAAGACAGG 119
|||||||||||||.|.|.|||||||..||||||||||||||||||||||||||||||||.||.||||||||.||
Sbjct 297 TTGTACGCGCTTCGGATAGACCCCAAGACTGGGCTGCTCATCGCTGCGGGCGGAGGAGGAGCTGCCAAGACCGG 370
Query 120 CATAAAGAATGGCGTGCACTTTCTGCAGCTAGAGCTGATTAATGGGCGCTTGAGTGCCTCCTTGCTGCACTCCC 193
||||||||||||||||||.||||||||||||||||||||.||.|||.||.||||.||.||||||||||||||.|
Sbjct 371 CATAAAGAATGGCGTGCATTTTCTGCAGCTAGAGCTGATCAACGGGTGCCTGAGCGCTTCCTTGCTGCACTCTC 444
Query 194 ATGACACAGAGACACGGGCCACCATGAACTTGGCACTGGCTGGTGACATCCTTGCTGCAGGGCAGGATGCCCAC 267
|||||||.||||||||||||||||||||.|||||.||.|||||||||||.||||||||.||.|||||||||||.
Sbjct 445 ATGACACGGAGACACGGGCCACCATGAATTTGGCGCTTGCTGGTGACATTCTTGCTGCCGGACAGGATGCCCAG 518
Query 268 TGTCAGCTCCTGCGCTTCCAGGCACATCAACAGCAGGGCAACAAGGCAGAGAAGGCCGGTTCCAAGGAGCAGGG 341
||||||||.||.||.|||||||..|||||||||.||||||..||.||.||||||.|.|||||||||||||||||
Sbjct 519 TGTCAGCTTCTTCGTTTCCAGGTCCATCAACAGAAGGGCAGTAAAGCGGAGAAGTCAGGTTCCAAGGAGCAGGG 592
Query 342 GCCTCGACAAAGGAAGGGAGCAGCCCCAGCAGAGAAGAAATGTGGAGCGGAA----ACCCAGCACGAGGGGCTA 411
.||||||||.||.|||||.||..|.||||||||||||||||..|||||..|| |||| |||.|||.|.
Sbjct 593 ACCTCGACAGAGAAAGGGGGCTCCTCCAGCAGAGAAGAAATCGGGAGCACAAGTTCACCC----CGAAGGGGTT 662
Query 412 GAACTCAGGGTAGAGAATTTGCAGGCGGTGCAGACAGACTTTAGCTCCGATCCACTGCAGAAAGTTGTGTGCTT 485
|||||||..|||.||||||||.||||.||.|||||||||||.|||...||.||.||||||||||||||||||||
Sbjct 663 GAACTCAAAGTAAAGAATTTGGAGGCAGTACAGACAGACTTCAGCAATGAACCGCTGCAGAAAGTTGTGTGCTT 736
Query 486 CAACCACGATAATACCCTGCTTGCCACTGGAGGAACAGATGGCTACGTCCGTGTCTGGAAGGTGCCCAGCCTGG 559
||||||.|||||.|||||||||||||||||||||||.|||||..|.||.||||||||||||||.||.|||||||
Sbjct 737 CAACCATGATAACACCCTGCTTGCCACTGGAGGAACTGATGGTCATGTTCGTGTCTGGAAGGTACCTAGCCTGG 810
Query 560 AGAAGGTTCTGGAGTTCAAAGCCCACGAAGGGGAGATTGAAGACCTGGCTTTAGGGCCTGATGGCAAGTTGGTA 633
||||.||||||||||||||||||||.|||||||||||||.|||..||.||||.||.||||||||||||.||||.
Sbjct 811 AGAAAGTTCTGGAGTTCAAAGCCCATGAAGGGGAGATTGGAGATTTGACTTTGGGTCCTGATGGCAAGCTGGTT 884
Query 634 ACCGTGGGCCGGGACCTTAAGGCCTCTGTGTGGCAGAAGGATCAGCTGGTGACACAGCTGCACTGGCAAGAAAA 707
||.||||||.|||||.||||||||||||||||||||||||||||.||||||||||||||.||.||||||||.||
Sbjct 885 ACAGTGGGCTGGGACTTTAAGGCCTCTGTGTGGCAGAAGGATCAACTGGTGACACAGCTACAGTGGCAAGAGAA 958
Query 708 TGGACCCACCTTTTCCAGCACACCTTACCGCTACCAGGCCTGCAGGTTTGGGCAGGTTCCAGACCAGCCTGCTG 781
||||||..|||.|||.|..|||||.||||||||||||||||||||||||||||||||||||||.||||..|.||
Sbjct 959 TGGACCAGCCTCTTCTAATACACCATACCGCTACCAGGCCTGCAGGTTTGGGCAGGTTCCAGATCAGCTCGGTG 1032
Query 782 GCCTGCGACTCTTCACAGTGCAAATTCCCCACAAGCGCCTGCGCCAGCCCCCTCCCTGCTACCTCACAGCCTGG 855
|.||||||||||||||||||||.||.||||||||||||||.||.||||||||.|||||||||||||||||||||
Sbjct 1033 GGCTGCGACTCTTCACAGTGCAGATACCCCACAAGCGCCTACGTCAGCCCCCACCCTGCTACCTCACAGCCTGG 1106
Query 856 GATGGCTCCAACTTCTTGCCCCTTCGGACCAAGTCCTGTGGCCATGAAGTCGTCTCCTGCCTCGATGTCAGTGA 929
||..|.||||.|||||||||.||||||||||..||||||||||||||.|||.|.|||||||||..|||
Sbjct 1107 GACAGTTCCACCTTCTTGCCTCTTCGGACCAGATCCTGTGGCCATGAGGTCATTTCCTGCCTCAGTGT------ 1174
Query 930 ATCCGGCACCTTCCTAGGCCTGGGCACAGTCACTGGCTCTGTTGCCATCTACATAGCTTTCTCTCTCCAGTGCC 1003
|||.|||
Sbjct 1175 -------------------------------------------------------------------CAGCGCC 1181
Query 1004 TCTACTACGTGAGGGAGGCCCATGGCATTGTGGTGACGGATGTGGCCTTTCTACCTGAGAAGGGTCGTGGTCCA 1077
|.||.||.||||.|||||||||||||||||||||.||.||||||.||||||||||||||||||||.||||||||
Sbjct 1182 TGTATTATGTGAAGGAGGCCCATGGCATTGTGGTAACAGATGTGACCTTTCTACCTGAGAAGGGTTGTGGTCCA 1255
Query 1078 GAGCTCCTTGGGTCCCATGAAACTGCCCTGTTCTCTGTGGCTGTGGACAGTCGTTGCCAGCTGCATCTGTTGCC 1151
.|||||||||||.|||||||||||||.||.|||||||||||||||||.||||||||||||.||||.|||.||||
Sbjct 1256 AAGCTCCTTGGGCCCCATGAAACTGCTCTTTTCTCTGTGGCTGTGGATAGTCGTTGCCAGTTGCACCTGCTGCC 1329
Query 1152 CTCACGGCGGAGTGTTCCTGTGTGGCTCCTGCTCCTGCTGTGTGTCGGGCTTATTATTGTGACCATCCTGCTGC 1225
.||||||||||||||||||||.|||||.||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1330 TTCACGGCGGAGTGTTCCTGTATGGCTTCTGCTCCTGCTGTGTGTCGGCCTTATTATTGTGACCATCCTGCTGC 1403
Query 1226 TCCAGAGTGCCTTTCCAGGTTTCCTT------------------------------------------------ 1251
||||||.||||||.||.||.||.||.
Sbjct 1404 TCCAGACTGCCTTCCCGGGATTTCTCTAACCTCTAGAGCGATGGGAATCAGCCTTGGACAGTGCCGCCTTCCAG 1477
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 1478 AGCAGAATCACTGAGCCCCACGGCTGAAGCTGCATCTGATGAAACTGATGGGTACTGCTTGTCCCTCAGCTCAC 1551
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 1552 ACTTGGCGGTGGCCTCTCGATCACTCTGGGTCTTGGGAGCTCTTGCCTTCACCTGTGGATCCACTTAAGACATT 1625
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 1626 GTGGTCTGAAGCTCAGGCCACAGTGCCTGCCTCGTTCCCTCAGCCTCCCTCCCAGGGCTCCAGAGCTCAGCTCT 1699
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 1700 TCCTTTTCTAGAAGCATGTGAAGATGCCCAAGAGCCTGGAGACATTGCCATCCTTCCTACAGAAACTGTTTCTC 1773
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 1774 CTCCTCCCCTCCAGCCTTCACACAAGGGCCTTGGCTTTGTTGAGACAGAGCCTGTGCTGGCACTTGCTGTTAGG 1847
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 1848 GTAGGAAGAGGCACAAAGAGGACCCCGGTAGCGGTGATCTGTGGCCTTCTGTGGGTAGCACCAAGCCAGTCAGT 1921
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 1922 CCAGACACATAGTGAGTTCCTGGAGGGTCTACTGCAGCCTGAGGAAAGGGAACCTCAGCTCGTTAGGCAGGAAG 1995
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 1996 AGTTGATATTTAATAAAGAGAGAACAATTGAACCGAGAGCCCAGCAGTCCTCTTGTCAGCTCTTTCCATCTTCA 2069
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 2070 GGAGTGAGTACTCCCAGGTCAGGTAGCCCCACTGAGTGCTGGAAGATGGCTCGGGCATACTGATGTAGTACGCG 2143
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 2144 GTTCATGTAACAGTGTTGCCAGGGCATCAGCCCTTCCAGGAAGCCAATGTGGCCACCCCGAGCTGTGATGAGCA 2217
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 2218 GGGCCACATAGGGAGACTTCTGGGCAGCCTGCAGAGGGAAGGCTAGAAGGGAGTCAGGAGGTCAGAAAGCTGTC 2291
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 2292 CGGGAATGAGAACCCAGGCTCATACCTCAACCCTCATCTATGGCTCAGTAGCTGTGGGATCAGGACCTCGTTGC 2365
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 2366 AGGCACTCACCATGGACTGGGGAGAAGGGGTCATCTGCTGCATTGAGGCAGAGAACAGGGGTGTGGATGGCATC 2439
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 2440 TACCTTGGTTCTTGGGCTTGCGGCTTGGTAATAAGCCGCACAGTCTTTATACCCAAAAGCCACAGATGTGTAGC 2513
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 2514 GCTCATCCAGCTGGCGGATCGTGCGGGCCTGTGTGGTAGAGGCATGGTAGGCTATAATATTAGAACGTAGGAGA 2587
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 2588 CCAACACTGGGGTGAGAGGGTGATCGAAAGATACCTTTATCGCAAAGTCTACATCCAACACCTTTTCAATTGGC 2661
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 2662 TTTCGGTTCCTGGAAAAGAATACATCAGGGTTTGTCTGAACTCCTGCACCTAACCCAGAGCTCACAGCTTCTGT 2735
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 2736 CTTCTTACCTCCTCAAGAAAGCCCAGATTGGAATGGACCCAAGCACTGGCAGAGCCTGCCATCTGCTATCCTAC 2809
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 2810 CTGGCCACAAGCCGGCAGAGTCCAGCAGTGAGTGGCTGATTGAAGAGCAGTGAGTTGAGTGGGGTCTCCAAGGA 2883
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 2884 GTCAACGGTCTCAAAGGAATCCCAACATGCAGACAATGGTCAGTCCTGCGACCAAGCCTCCAGCCTTCCCAGTC 2957
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 2958 TGTGCCAGATAGTTAAGCACCAGTATCCTGTAAAATTGGATGCAGGGCCATGGAAAGTGTTGGCATGGGAACAC 3031
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 3032 TGGGACAGAAGAGGAGAAAAAGACAAGATGAACAAACCCAGGCAACTATTACCCTCCAAAAGAGATGCCCACAG 3105
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 3106 CCAGCAGTGGAGCTTGGGAGTAGCGACGTTTTATGTGCTTCACAACTGTTTCTAGGTCTTCAGTATTGCTGGCA 3179
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 3180 CAGTAAGCCCTGTGAGTCTGAGGGCAAAGCGGGTCATTGACTAGGGAGGGAGGCTCTTGCCAGAAGACAGCCAA 3253
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 3254 GCGGAAGGGCTCAGGAAGGGTAGGGGGTTGGTAAGTAGGTAGAGCCCTAGGGCCAGTGGTCTCTAAAGGGAACA 3327
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 3328 GGGACAGGGCCACCACAAAGGAGGAGGGTACTCACCAGCAGCTCTTCCCCTCGGCATCCTCGGTTATTAAATAC 3401
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 3402 AACAGCCCTGGGGCAAGATAGGAGTGTGAGCCAAGCCCTCCCAAGAAGACCCTCCCCTTGATAGTCTTCAGAAA 3475
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 3476 GGCCCCTGTCAGAGAGTACCATATCAGGGTCAGATGTACTTTTGCCCTTCCCAAGTTCTGTACCCTGTCCTTAC 3549
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 3550 CTATAGCCATCCTTCAGAGCTTGGTTAACTAGGTGTAAGATGTACGGCTCCTGGCTACTGCCGCTGATGCCTGG 3623
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 3624 AAGCAGCAGTACTATGGGCTGGGTGGTAGGGTCCGGGTAGTGAGTGCTGTTAGGCTGCTCGGCCCAGTCTAGAA 3697
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 3698 GGAACTGGCCTCCATCTGGGGTCTGGAGGACTTCACTGGGGTTTAGAGATTGCAACACAAAGATGTTATTAGGA 3771
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 3772 GTTGCACTTCTGCATGTCAAAGCTCTACCCTCTGACTCGCCCACAAGCTCTGCTGTTTGTCATGGGTATCACTT 3845
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 3846 GAAGGCACGCTTCATATAAAACAGCAAGGTGACCAGCTAGATTGGACTATTAACCTTGTGTGGGTGCAAGTAGA 3919
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 3920 GAGCCTTTCCATACATATAGGCTCATGCTTTGGGACAAAGATTACCGTCATATAAAGAGGTGGACCATAGAGAC 3993
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 3994 TTGCAGCTTTGTGTTCCTGGTCCTGACCCTTCTTACCTCCGGTAAGGGACCACAGGCTGAGACTGCAGGAGGAC 4067
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 4068 TCGGAAGATGGTTTGCAGCCGTCCCTCAAAGCACCACAGTGTCGGGTAGAAAGTCTCCACAGTGACTGGACAGT 4141
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 4142 GTTGTTCCAGGAAGGCCAGAAACTGGGGCCCAGCCACCAGACGAGGCCTCTATAATCATACAACACATTGGCCT 4215
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 4216 CTTTTGTTGTCCTGTCCCAGACACTGGAGGGTCAGTGAGCTCCTCCCCGGAATCCAGCCTTAAGGATGGATTTG 4289
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 4290 CCACAGTCAAGTGTCCAGCACAGCTCAGCCTAGAGTGGCATATGGTGCCCCACAAAAACCACAGTCCTAAAGTG 4363
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 4364 TCCCCTCCGGGACTGACCCTGAAGGAAGGACTGCAGCAGTTGTCGAGGTACTGACTCCCACACTCAGCCTGTCC 4437
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 4438 CCTCCTCAAACCCACTTGTGCTAGAACAGGTACTATAAGCCGCTCAGGTGAGCAGCTAGAGTATGGCCTGTGCT 4511
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 4512 CCTCTGGCTGGTAAACTGGAGTTTTTGTCTGGTTTGGTTTTATTTCTAATTATGTGCCTCTCCTATGAGCATGG 4585
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 4586 GCACACAGGTCAGATCTTGCCTGTGAGATCCAGAAGAAGTGTTGGATCCTCTGGAGCTGGAGTTAGAGGTAGCT 4659
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 4660 GAGAGAGCCACAGCATGGAAGCTGGGACAAACTGATCTGCAGGGACAGAAGTATATGCTCTTCAGGGCTGAGAC 4733
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 4734 ATCTGGCCTGGATGGTTGGAGCCTTGAACTCATCGTAATCCTCCTGCCTCTGTGCTAGGCTTGTGTCACCTTGG 4807
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 4808 TGTGCTGGTTGGGACTCTTGACCAGGTGAAGATACCTCTGCCATTCAATCTGGCCTTTGCATTGTAGCAACCTT 4881
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 4882 GTCCAAATGCATCACCCTGAAGCTCATTCGGGTCACTCCAGCTCCTGTACCCCACTGATTTTAGCACCCCAGTG 4955
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 4956 TCTACATATTTCTCTAATGTATGTGTGCTCAGTGCTGAAGGGCTTCTTTTACAGGGGCACCTCATATTCTCTTG 5029
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 5030 TGGAGCCCCAGTTCTTAGGCTGTGTTCTACAGGAGGAAGCACCCCAACGTGAACAAGTATTTCCTTTCCTCGTG 5103
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 5104 CCAACTAGAGAAAAGGGCACAGTGATGGGACAATGGGGACAAACGAGGTTGATGGGCACCAAGCCCTGACTCTC 5177
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 5178 TTCTGCCTCTTCGCTTGGTTCTTTATTGGCATGAAGTAAATGAGCTGGCCTAGCCTCACAGACCTAAGGACACT 5251
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 5252 GGGCTGAACAGAGTTGGAGGACGCCAGCCTAAGAGCAGAATGGGAGGGTTATGTTGGGATACAGCAAGCCCGGG 5325
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 5326 ACAGTCTCCAGCATTGGAGAAGGTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTAATCATAAATTGCACTTGTA 5399
Query 1252 ----- 1251
Sbjct 5400 AGAAA 5404
