Nucleotide Global Alignment

Description

Query:
ccsbBroad304_02545
Subject:
XR_001736937.1
Aligned Length:
2258
Identities:
865
Gaps:
1328

Alignment

Query    1  -----------------------------------------------------------------------ATG  3
                                                                                   |||
Sbjct    1  AATGAAAGATTTCAAACCCCAAACAGTGCAACTGAAACTTTTGTATTAGCATACTACTGAGAATATCTAACATG  74

Query    4  TTGTTACTAATCAATGTCATTCTGACCTTGTGGGTTTCCTGTGCTAATGGACAAGTGAAACCTTGTGATTTTCC  77
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TTGTTACTAATCAATGTCATTCTGACCTTGTGGGTTTCCTGTGCTAATGGACAAGTGAAACCTTGTGATTTTCC  148

Query   78  AGACATTAAACATGGAGGTCTATTTCATGAGAATATGCGTAGACCATACTTTCCAGTAGCTGTAGGAAAATATT  151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AGACATTAAACATGGAGGTCTATTTCATGAGAATATGCGTAGACCATACTTTCCAGTAGCTGTAGGAAAATATT  222

Query  152  ACTCCTATTACTGTGATGAACATTTTGAGACTCCTTCAGGAAGTTACTGGGATTACATTCATTGCACACAAAAT  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ACTCCTATTACTGTGATGAACATTTTGAGACTCCTTCAGGAAGTTACTGGGATTACATTCATTGCACACAAAAT  296

Query  226  GGGTGGTCACCAGCAGTACCATGTCTCAGAAAATGTTATTTTCCTTATTTGGAAAATGGATATAATCAAAATTA  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGGTGGTCACCAGCAGTACCATGTCTCAGAAAATGTTATTTTCCTTATTTGGAAAATGGATATAATCAAAATTA  370

Query  300  TGGAAGAAAGTTTGTACAGGGTAACTCTACAGAAGTTGCCTGCCATCCTGGCTACGGTCTTCCAAAAGCGCAGA  373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TGGAAGAAAGTTTGTACAGGGTAACTCTACAGAAGTTGCCTGCCATCCTGGCTACGGTCTTCCAAAAGCGCAGA  444

Query  374  CCACAGTTACATGTACGGAGAAAGGCTGGTCTCCTACTCCCAGATGCATCCGTGTCAGAACATGCTCAAAATCA  447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCACAGTTACATGTACGGAGAAAGGCTGGTCTCCTACTCCCAGATGCATCCGTGTCAGAACATGCTCAAAATCA  518

Query  448  GATATAGAAATTGAAAATGGATTCATTTCCGAATCTTCCTCTATTTATATTTTAAATAAAGAAATACAATATAA  521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GATATAGAAATTGAAAATGGATTCATTTCCGAATCTTCCTCTATTTATATTTTAAATAAAGAAATACAATATAA  592

Query  522  ATGTAAACCAGGATATGCAACAGCAGATGGAAATTCTTCAGGATCAATTACATGTTTGCAAAATGGATGGTCAG  595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ATGTAAACCAGGATATGCAACAGCAGATGGAAATTCTTCAGGATCAATTACATGTTTGCAAAATGGATGGTCAG  666

Query  596  CACAACCAATTTGCATTAATTCT-----------------------TCAGAAAAGT----------GTGGGCCT  636
            ||||||||||||||||||.|.||                       ||||||||||          |.|||   
Sbjct  667  CACAACCAATTTGCATTACTGCTTGTATTGCATTCCGTGCTCACGCTCAGAAAAGTTGTACATGTCGGGGG---  737

Query  637  CCTCCACCTATTAGCAATG-GTGATACCACCTCCTTTCTACTAAAAGTGTATGTGCCACAGTCA--AGAGTC-G  706
                        ||.|||| |||          |||..|.||.||    |.|.|||.|..||||  |||.|| |
Sbjct  738  ------------AGAAATGAGTG----------CTTAATTCTGAA----TTTCTGCTAGCGTCAGGAGAATCAG  785

Query  707  A------------GTACCAATG----------------CCA-----------------GCCCTACTATGAACTT  735
            |            |||.|||||                |||                 .|||||.|.|..|||.
Sbjct  786  ACCTTAATAATTTGTATCAATGATGCTACTGAGGATATCCAATCAAAAAATTATCTCTACCCTATTGTTTACTA  859

Query  736  CAGGGTTCTAATTATGTAACATGTAGTAATGGA-------GAGTGGTCGG--------------AACC------  782
            |||.|    ||      ||||   |||||.|||       .|||||..||              ||||      
Sbjct  860  CAGAG----AA------AACA---AGTAAAGGAAAAGGGTAAGTGGGTGGGCTGAATGTTTACAAACCTCATAC  920

Query  783  --ACCAA--GATGCATACATCCATGTATAA--TAACTGAA-------GA--------AAACATGAATAAAAATA  835
              .||||  |||.|.|   |.|||||| ||  |..|||||       ||        .|..||| |||||.|.|
Sbjct  921  TTGCCAATGGATTCTT---TACATGTA-AAGTTCTCTGAACGTGCTCGACCTTTACTTAGTATG-ATAAAGAGA  989

Query  836  A--CATAAAGTTAAAAGGAAGA------AGTGACAGAAAA-----------------------TAT-TATGCAA  877
            |  |||||.|...||||||| |      ||||.|  ||||                       ||| |||.||.
Sbjct  990  ATGCATAATGAACAAAGGAA-ATCTTTCAGTGGC--AAAAGTTGATTTTTTTTCTTTCCTCTTTATATATTCAC  1060

Query  878  AAACAG-----GGGATACCAT---TGAATTTATGTGTAA-------ATTGGGATATAATGCAAATACAT-----  931
            |||.||     ..|||| .||   |||||.|||.|.|||       |.||...||||||    .|||||     
Sbjct 1061  AAAGAGTTTTAAAGATA-AATTGCTGAATGTATTTTTAACCCAAATACTGTTGTATAAT----TTACATACTCC  1129

Query  932  CAATTCTA--TCA-TTTCAAG----CAGTGT------------GTCGGGAAGGGATA--GTGGA------ATAC  978
            |||.||.|  ||| |||||||    ||.| |            |||   |.|.||||  .||||      ||||
Sbjct 1130  CAAATCCACTTCATTTTCAAGGGTACAAT-TCAACTATTTTTAGTC---ATGAGATAATATGGAACCTTGATAC  1199

Query  979  -----CCCAGATGCGAA---------------------------------------------------------  990
                 .|.|.||| |||                                                         
Sbjct 1200  ATAATACAACATG-GAAGACTCTCAAAAATATTAAGCTAAGAGAGAAAAAAGATACACTTACAAAGTGATTATC  1272

Query  991  --------------------------------------------------------------------------  990
                                                                                      
Sbjct 1273  TCAATGTTATCATGAGTTTTGGGGGTTATATGAATTCCTACATTTCTAGAATACTGTTTTCAATTTCTATACTT  1346

Query  991  --------------------------------------------------------------------------  990
                                                                                      
Sbjct 1347  ATCAAGGGCTCTGTGTAAAGAAAAAGGTGTATACTTCAATTTTACTCAGCTTTGATAAATGATCTACTTTAAAA  1420

Query  991  --------------------------------------------------------------------------  990
                                                                                      
Sbjct 1421  CTTGTGAAATAAAAGACAGGATGCTTCATAAATTTTATAGAACTTATATCCAATTAATATAATTTTTATCTAAT  1494

Query  991  --------------------------------------------------------------------------  990
                                                                                      
Sbjct 1495  ATATACACCCTTACTGTTAGTAAATCGTTACATAACTACATAAATGGTTACATTAACTTTTAAATTCACAAATT  1568

Query  991  --------------------------------------------------------------------------  990
                                                                                      
Sbjct 1569  TAAAAGCGGTTTAAGCTCCGTGACACATTGGACTACGAATGCTACGATGGATATGAAATCAGTTATGGAAACAC  1642

Query  991  --------------------------------------------------------------------------  990
                                                                                      
Sbjct 1643  CACAGGTTCCATAGTGTGTGGTGAAGATGGGTAGTCCCATTTCCCAACATGTTATAGTAAGTATTTTATTCAAG  1716

Query  991  --------------------------------------------------------------------------  990
                                                                                      
Sbjct 1717  TATTTTTTATTAGAATTAAATAAAATAATAAATAGACACCTACATATGTATATGTACACATATGTGTGTACATA  1790

Query  991  --------------------------------------------------------------------------  990
                                                                                      
Sbjct 1791  TATGTACATATATATGTAGTCCTCCTATGAGTGTGAATTATCTTGAGACTTAAAAAGAAAAAACAACGTTGAAA  1864

Query  991  --------------------------------------------------------------------------  990
                                                                                      
Sbjct 1865  ATGCAGATGTCTTCCTAAGAAATCAAATAAGATACAGTTAAGAGTATATAAAAAGCTTTATTTAGAAAGTTTCC  1938

Query  991  --------------------------------------------------------------------------  990
                                                                                      
Sbjct 1939  AATAAGACTATTGATTTTTCCCCACATATAAAGTATTTTTTTTCAGATTCTTCAGAAAAGTGTGGGCCTCCTCC  2012

Query  991  --------------------------------------------------------------------------  990
                                                                                      
Sbjct 2013  ACCTATTAGCAATGGTGATACCACCTCCTTTCTACTAAAAGTGTATGTGCCACAGTCAAGAGTCGAGTACCAAT  2086

Query  991  --------------------------------------------------------------------------  990
                                                                                      
Sbjct 2087  GCCAGCCCTACTATGAACTTCAGGGTTCTAATTATGTAACATGTAGTAATGGAGAGTGGTCGGAACCACCAAGA  2160

Query  991  --------------------------------------  990
                                                  
Sbjct 2161  TGCATACATCCATGTATAATAACTGAAGAAAACATGAA  2198

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