Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02545
- Subject:
- XR_001736937.1
- Aligned Length:
- 2258
- Identities:
- 865
- Gaps:
- 1328
Alignment
Query 1 -----------------------------------------------------------------------ATG 3
|||
Sbjct 1 AATGAAAGATTTCAAACCCCAAACAGTGCAACTGAAACTTTTGTATTAGCATACTACTGAGAATATCTAACATG 74
Query 4 TTGTTACTAATCAATGTCATTCTGACCTTGTGGGTTTCCTGTGCTAATGGACAAGTGAAACCTTGTGATTTTCC 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TTGTTACTAATCAATGTCATTCTGACCTTGTGGGTTTCCTGTGCTAATGGACAAGTGAAACCTTGTGATTTTCC 148
Query 78 AGACATTAAACATGGAGGTCTATTTCATGAGAATATGCGTAGACCATACTTTCCAGTAGCTGTAGGAAAATATT 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AGACATTAAACATGGAGGTCTATTTCATGAGAATATGCGTAGACCATACTTTCCAGTAGCTGTAGGAAAATATT 222
Query 152 ACTCCTATTACTGTGATGAACATTTTGAGACTCCTTCAGGAAGTTACTGGGATTACATTCATTGCACACAAAAT 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ACTCCTATTACTGTGATGAACATTTTGAGACTCCTTCAGGAAGTTACTGGGATTACATTCATTGCACACAAAAT 296
Query 226 GGGTGGTCACCAGCAGTACCATGTCTCAGAAAATGTTATTTTCCTTATTTGGAAAATGGATATAATCAAAATTA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGGTGGTCACCAGCAGTACCATGTCTCAGAAAATGTTATTTTCCTTATTTGGAAAATGGATATAATCAAAATTA 370
Query 300 TGGAAGAAAGTTTGTACAGGGTAACTCTACAGAAGTTGCCTGCCATCCTGGCTACGGTCTTCCAAAAGCGCAGA 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGGAAGAAAGTTTGTACAGGGTAACTCTACAGAAGTTGCCTGCCATCCTGGCTACGGTCTTCCAAAAGCGCAGA 444
Query 374 CCACAGTTACATGTACGGAGAAAGGCTGGTCTCCTACTCCCAGATGCATCCGTGTCAGAACATGCTCAAAATCA 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCACAGTTACATGTACGGAGAAAGGCTGGTCTCCTACTCCCAGATGCATCCGTGTCAGAACATGCTCAAAATCA 518
Query 448 GATATAGAAATTGAAAATGGATTCATTTCCGAATCTTCCTCTATTTATATTTTAAATAAAGAAATACAATATAA 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GATATAGAAATTGAAAATGGATTCATTTCCGAATCTTCCTCTATTTATATTTTAAATAAAGAAATACAATATAA 592
Query 522 ATGTAAACCAGGATATGCAACAGCAGATGGAAATTCTTCAGGATCAATTACATGTTTGCAAAATGGATGGTCAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATGTAAACCAGGATATGCAACAGCAGATGGAAATTCTTCAGGATCAATTACATGTTTGCAAAATGGATGGTCAG 666
Query 596 CACAACCAATTTGCATTAATTCT-----------------------TCAGAAAAGT----------GTGGGCCT 636
||||||||||||||||||.|.|| |||||||||| |.|||
Sbjct 667 CACAACCAATTTGCATTACTGCTTGTATTGCATTCCGTGCTCACGCTCAGAAAAGTTGTACATGTCGGGGG--- 737
Query 637 CCTCCACCTATTAGCAATG-GTGATACCACCTCCTTTCTACTAAAAGTGTATGTGCCACAGTCA--AGAGTC-G 706
||.|||| ||| |||..|.||.|| |.|.|||.|..|||| |||.|| |
Sbjct 738 ------------AGAAATGAGTG----------CTTAATTCTGAA----TTTCTGCTAGCGTCAGGAGAATCAG 785
Query 707 A------------GTACCAATG----------------CCA-----------------GCCCTACTATGAACTT 735
| |||.||||| ||| .|||||.|.|..|||.
Sbjct 786 ACCTTAATAATTTGTATCAATGATGCTACTGAGGATATCCAATCAAAAAATTATCTCTACCCTATTGTTTACTA 859
Query 736 CAGGGTTCTAATTATGTAACATGTAGTAATGGA-------GAGTGGTCGG--------------AACC------ 782
|||.| || |||| |||||.||| .|||||..|| ||||
Sbjct 860 CAGAG----AA------AACA---AGTAAAGGAAAAGGGTAAGTGGGTGGGCTGAATGTTTACAAACCTCATAC 920
Query 783 --ACCAA--GATGCATACATCCATGTATAA--TAACTGAA-------GA--------AAACATGAATAAAAATA 835
.|||| |||.|.| |.|||||| || |..||||| || .|..||| |||||.|.|
Sbjct 921 TTGCCAATGGATTCTT---TACATGTA-AAGTTCTCTGAACGTGCTCGACCTTTACTTAGTATG-ATAAAGAGA 989
Query 836 A--CATAAAGTTAAAAGGAAGA------AGTGACAGAAAA-----------------------TAT-TATGCAA 877
| |||||.|...||||||| | ||||.| |||| ||| |||.||.
Sbjct 990 ATGCATAATGAACAAAGGAA-ATCTTTCAGTGGC--AAAAGTTGATTTTTTTTCTTTCCTCTTTATATATTCAC 1060
Query 878 AAACAG-----GGGATACCAT---TGAATTTATGTGTAA-------ATTGGGATATAATGCAAATACAT----- 931
|||.|| ..|||| .|| |||||.|||.|.||| |.||...|||||| .|||||
Sbjct 1061 AAAGAGTTTTAAAGATA-AATTGCTGAATGTATTTTTAACCCAAATACTGTTGTATAAT----TTACATACTCC 1129
Query 932 CAATTCTA--TCA-TTTCAAG----CAGTGT------------GTCGGGAAGGGATA--GTGGA------ATAC 978
|||.||.| ||| ||||||| ||.| | ||| |.|.|||| .|||| ||||
Sbjct 1130 CAAATCCACTTCATTTTCAAGGGTACAAT-TCAACTATTTTTAGTC---ATGAGATAATATGGAACCTTGATAC 1199
Query 979 -----CCCAGATGCGAA--------------------------------------------------------- 990
.|.|.||| |||
Sbjct 1200 ATAATACAACATG-GAAGACTCTCAAAAATATTAAGCTAAGAGAGAAAAAAGATACACTTACAAAGTGATTATC 1272
Query 991 -------------------------------------------------------------------------- 990
Sbjct 1273 TCAATGTTATCATGAGTTTTGGGGGTTATATGAATTCCTACATTTCTAGAATACTGTTTTCAATTTCTATACTT 1346
Query 991 -------------------------------------------------------------------------- 990
Sbjct 1347 ATCAAGGGCTCTGTGTAAAGAAAAAGGTGTATACTTCAATTTTACTCAGCTTTGATAAATGATCTACTTTAAAA 1420
Query 991 -------------------------------------------------------------------------- 990
Sbjct 1421 CTTGTGAAATAAAAGACAGGATGCTTCATAAATTTTATAGAACTTATATCCAATTAATATAATTTTTATCTAAT 1494
Query 991 -------------------------------------------------------------------------- 990
Sbjct 1495 ATATACACCCTTACTGTTAGTAAATCGTTACATAACTACATAAATGGTTACATTAACTTTTAAATTCACAAATT 1568
Query 991 -------------------------------------------------------------------------- 990
Sbjct 1569 TAAAAGCGGTTTAAGCTCCGTGACACATTGGACTACGAATGCTACGATGGATATGAAATCAGTTATGGAAACAC 1642
Query 991 -------------------------------------------------------------------------- 990
Sbjct 1643 CACAGGTTCCATAGTGTGTGGTGAAGATGGGTAGTCCCATTTCCCAACATGTTATAGTAAGTATTTTATTCAAG 1716
Query 991 -------------------------------------------------------------------------- 990
Sbjct 1717 TATTTTTTATTAGAATTAAATAAAATAATAAATAGACACCTACATATGTATATGTACACATATGTGTGTACATA 1790
Query 991 -------------------------------------------------------------------------- 990
Sbjct 1791 TATGTACATATATATGTAGTCCTCCTATGAGTGTGAATTATCTTGAGACTTAAAAAGAAAAAACAACGTTGAAA 1864
Query 991 -------------------------------------------------------------------------- 990
Sbjct 1865 ATGCAGATGTCTTCCTAAGAAATCAAATAAGATACAGTTAAGAGTATATAAAAAGCTTTATTTAGAAAGTTTCC 1938
Query 991 -------------------------------------------------------------------------- 990
Sbjct 1939 AATAAGACTATTGATTTTTCCCCACATATAAAGTATTTTTTTTCAGATTCTTCAGAAAAGTGTGGGCCTCCTCC 2012
Query 991 -------------------------------------------------------------------------- 990
Sbjct 2013 ACCTATTAGCAATGGTGATACCACCTCCTTTCTACTAAAAGTGTATGTGCCACAGTCAAGAGTCGAGTACCAAT 2086
Query 991 -------------------------------------------------------------------------- 990
Sbjct 2087 GCCAGCCCTACTATGAACTTCAGGGTTCTAATTATGTAACATGTAGTAATGGAGAGTGGTCGGAACCACCAAGA 2160
Query 991 -------------------------------------- 990
Sbjct 2161 TGCATACATCCATGTATAATAACTGAAGAAAACATGAA 2198
