Nucleotide Global Alignment

Description

• Query: ccsbBroad304_02545
• Subject: XR_426757.2
• Aligned Length: 1228
• Identities: 808
• Gaps: 365

Alignment

Query    1  -----------------------------------------------------------------------ATG  3
                                                                                   |||
Sbjct    1  AATGAAAGATTTCAAACCCCAAACAGTGCAACTGAAACTTTTGTATTAGCATACTACTGAGAATATCTAACATG  74

Query    4  TTGTTACTAATCAATGTCATTCTGACCTTGTGGGTTTCCTGTGCTAATGGACAAGTGAAACCTTGTGATTTTCC  77
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TTGTTACTAATCAATGTCATTCTGACCTTGTGGGTTTCCTGTGCTAATGGACAAGTGAAACCTTGTGATTTTCC  148

Query   78  AGACATTAAACATGGAGGTCTATTTCATGAGAATATGCGTAGACCATACTTTCCAGTAGCTGTAGGAAAATATT  151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AGACATTAAACATGGAGGTCTATTTCATGAGAATATGCGTAGACCATACTTTCCAGTAGCTGTAGGAAAATATT  222

Query  152  ACTCCTATTACTGTGATGAACATTTTGAGACTCCTTCAGGAAGTTACTGGGATTACATTCATTGCACACAAAAT  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ACTCCTATTACTGTGATGAACATTTTGAGACTCCTTCAGGAAGTTACTGGGATTACATTCATTGCACACAAAAT  296

Query  226  GGGTGGTCACCAGCAGTACCATGTCTCAGAAAATGTTATTTTCCTTATTTGGAAAATGGATATAATCAAAATTA  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGGTGGTCACCAGCAGTACCATGTCTCAGAAAATGTTATTTTCCTTATTTGGAAAATGGATATAATCAAAATTA  370

Query  300  TGGAAGAAAGTTTGTACAGGGTAACTCTACAGAAGTTGCCTGCCATCCTGGCTACGGTCTTCCAAAAGCGCAGA  373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TGGAAGAAAGTTTGTACAGGGTAACTCTACAGAAGTTGCCTGCCATCCTGGCTACGGTCTTCCAAAAGCGCAGA  444

Query  374  CCACAGTTACATGTACGGAGAAAGGCTGGTCTCCTACTCCCAGATGCATCCGTGTCAGAACATGCTCAAAATCA  447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCACAGTTACATGTACGGAGAAAGGCTGGTCTCCTACTCCCAGATGCATCCGTGTCAGAACATGCTCAAAATCA  518

Query  448  GATATAGAAATTGAAAATGGATTCATTTCCGAATCTTCCTCTATTTATATTTTAAATAAAGAAATACAATATAA  521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GATATAGAAATTGAAAATGGATTCATTTCCGAATCTTCCTCTATTTATATTTTAAATAAAGAAATACAATATAA  592

Query  522  ATGTAAACCAGGATATGCAACAGCAGATGGAAATTCTTCAGGATCAATTACATGTTTGCAAAATGGATGGTCAG  595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ATGTAAACCAGGATATGCAACAGCAGATGGAAATTCTTCAGGATCAATTACATGTTTGCAAAATGGATGGTCAG  666

Query  596  CACAACCAATTTGCATTAATTCT-----------------------TCAGAAAAGT----------GTGGGCCT  636
            ||||||||||||||||||.|.||                       ||||||||||          |.|||   
Sbjct  667  CACAACCAATTTGCATTACTGCTTGTATTGCATTCCGTGCTCACGCTCAGAAAAGTTGTACATGTCGGGGG---  737

Query  637  CCTCCACCTATTAGCAATG-GTGATACCACCTCCTTTCTACTAAAAGTGTATGTGCCACAGTCAAGAGTCGAGT  709
                        ||.|||| |||          |||..|.||.||    |.|.|||.|..||||.|||      
Sbjct  738  ------------AGAAATGAGTG----------CTTAATTCTGAA----TTTCTGCTAGCGTCAGGAG------  779

Query  710  ACCAATGCCAGCCCTACTATGAACTTCAGGGTTCTAATTATGTAAC-ATG----TAGTAATGGAGAGTGGTCGG  778
               |||  |||.|||                |..||||| ||||.| |||    ||.|.| |||.|    ||..
Sbjct  780  ---AAT--CAGACCT----------------TAATAATT-TGTATCAATGATGCTACTGA-GGATA----TCCA  826

Query  779  AACCACCAAGATGCATACATCCA------TGTATAATAACTGAAGAAAACATGAATAAAAATAACATAAAGTTA  846
            |.|.|  ||.||   ||..||.|      |||.||.| ||.| ||||||||.|             ||||| .|
Sbjct  827  ATCAA--AAAAT---TATCTCTACCCTATTGTTTACT-ACAG-AGAAAACAAG-------------TAAAG-GA  879

Query  847  AAAGG------AAG--AAGTGACAGAAAATATT---------ATGCAAAAACAGGGGATACCATTGAATTTATG  903
            |||||      |||  ..|||||     |.|||         ||||            |||.||.||   ||||
Sbjct  880  AAAGGCGGTTTAAGCTCCGTGAC-----ACATTGGACTACGAATGC------------TACGATGGA---TATG  933

Query  904  TGTAAATTGGGATATAATGCAAATACATCA-ATTCTATCATTTCAAGCAGTGTGTCGGGAAG--GGATAGTGGA  974
               ||||..|    |.|||.|||.||..|| .|||.||          |||||||.|.||||  ||.||||   
Sbjct  934  ---AAATCAG----TTATGGAAACACCACAGGTTCCAT----------AGTGTGTGGTGAAGATGGGTAGT---  987

Query  975  ATACCCCAGATGCGAA----------------------------------------------------------  990
                ||||..|.|.||                                                          
Sbjct  988  ----CCCATTTCCCAACATGTTATAATTCTTCAGAAAAGTGTGGGCCTCCTCCACCTATTAGCAATGGTGATAC  1057

Query  991  --------------------------------------------  990
                                                        
Sbjct 1058  CACCTCCTTTCTACTAAAAGTGTATGTGCCACAGTCAAGAGTCG  1101