Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02599
- Subject:
- XR_001753591.1
- Aligned Length:
- 3332
- Identities:
- 1263
- Gaps:
- 1939
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCTTCCCTATTTCCCTGCATTTCTCTTCTGTGCTCACTGCCACACGCAGCTCAGCCTGGGCGGCACAGCCAGAT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGAGATGCGTCTCTGCTGATCTGAGTCTGCCTGCAGCATGGACCTGGGTCTTCCCTGAAGCATCTCCAGGGCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAGGGACGACTGCCATGATGACAGCACCCCATGAGAAGAAGGACCCAGCCTCCGATTGGCCACACTCTGTGTG 222
Query 1 -----------------------------------------------------------------ATGACCCCC 9
|||||||||
Sbjct 223 TCTCTCTATCCTGCCAGCACCGAGGGCTCATCCATCCACAGAGCAGGGCAGTGGGAGGAGACGCCATGACCCCC 296
Query 10 ATCGTCACAGTCCTGATCTGTCTCAGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGACCCTCCCCAA 83
|||.||||.|||||||||||||||.||||||||||||||||||||||||||||||||||||||..|||||||||
Sbjct 297 ATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGCACCTCCCCAA 370
Query 84 GCCCACACTCTGGGCTGAGCCAGGCTCTGTGATCACCCAGGGGAGTCCCGTGACCCTCTGGTGTCAGGGGATCC 157
||||||.|||||||||||.|||||||||||||||||||||||||||||.|||||||||.|||||||||||..||
Sbjct 371 GCCCACCCTCTGGGCTGAACCAGGCTCTGTGATCACCCAGGGGAGTCCTGTGACCCTCAGGTGTCAGGGGGGCC 444
Query 158 TGGAGACCCAGGAGTACCGTCTGTATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCCCACAGGAGATT 231
.|||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 445 AGGAGACCCAGGAGTACCGTCTATATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCCCACAGGAGCTT 518
Query 232 GTGAAGAAGGGCCAGTTCCCCATCCCATCCATCACCTGGGAACACACAGGGCGGTATCGCTGTTTCTACGGTAG 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||.|||||
Sbjct 519 GTGAAGAAGGGCCAGTTCCCCATCCCATCCATCACCTGGGAACACACAGGGCGGTATCGCTGTTACTATGGTAG 592
Query 306 CCACACTGCAGGCTGGTCAGAGCCCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACATCAAACCCACCC 379
|.|||||||||||.|.||||||..||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CGACACTGCAGGCCGCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACATCAAACCCACCC 666
Query 380 TCTCAGCTCTACCCAGCCCTGTGGTGACCTCAGGAGGGAACGTGACCCTCCATTGTGTCTCACAGGTGGCATTT 453
|||||||.|..||||||||.|||||||.||||||||||||.||.||||||||.||||.||||||||||||||||
Sbjct 667 TCTCAGCCCAGCCCAGCCCCGTGGTGAACTCAGGAGGGAATGTAACCCTCCAGTGTGACTCACAGGTGGCATTT 740
Query 454 GGCAGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCACAGCCCCGTACCCATGG 527
|...||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||.|.|||.|||
Sbjct 741 GATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCAGCCCCATGCCCGTGG 814
Query 528 GTGGTCCCGGGCCATCTTCTCTGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTCGTACAGGTGCTATGCTTATG 601
||.||||||.|||||||||||.|||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 815 GTCGTCCCGCGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTGGTACAGGTGCTATGCTTATG 888
Query 602 ACTCGAACTCTCCCCATGTGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGTGTTTCTAAGAAG 675
||||||||||||||.|||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACTCGAACTCTCCCTATGAGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGTGTTTCTAAGAAG 962
Query 676 CCATCACTCTCAGTGCAGCCAGGTCCTATAGTGGCCCCTGGGGAGAGCCTGACCCTCCAGTGTGTTTCTGATGT 749
|||||||||||||||||||||||||||||.||||||||||.|||||.||||||.||.|||||||..|||||||.
Sbjct 963 CCATCACTCTCAGTGCAGCCAGGTCCTATCGTGGCCCCTGAGGAGACCCTGACTCTGCAGTGTGGCTCTGATGC 1036
Query 750 CAGCTACGACAGATTTGTTCTGTATAAGGAGGGAGAACGTGACTTCCTCCAGCTCCCTGGCCCACAGCCCCAGG 823
..|||||.||||||||||||||||||||||.||.||||||||||||||.||||||.|||||.||||||||||||
Sbjct 1037 TGGCTACAACAGATTTGTTCTGTATAAGGACGGGGAACGTGACTTCCTTCAGCTCGCTGGCGCACAGCCCCAGG 1110
Query 824 CTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACAGATGCTCCGGT 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 1111 CTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACAGATGCTACGGT 1184
Query 898 GCATACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATCGCAGGACAGTTCCGTGG 971
|||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATCGCAG------------- 1245
Query 972 CAGACCCTTCATCTCGGTGCATCCGGGCCCCACGGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCAT 1045
|||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 1246 ----------------------CCGGGCCCCACGGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCAC 1297
Query 1046 GGGGGCCGTTCCACACTTTCCTTCTGACCAAGGCGGGAGCAGCTGATGCCCCCCTCCGTCTCAGATCAATACAC 1119
.|||...|.|.||.|||||||||||||||||||.|||.||||||||||.|||....|||||.|||||||...||
Sbjct 1298 AGGGATGGATGCAAACTTTCCTTCTGACCAAGGAGGGGGCAGCTGATGACCCATGGCGTCTAAGATCAACGTAC 1371
Query 1120 GAATATCCTAAGTACCAGGCTGAATTCCCTATGAGTCCTGTGACCTCAGCCCACTCGGGGACCTACAGGTGCTA 1193
.|||.||..||.|||||||||||||||||.|||.|||||||||||||||||||..|||||||||||||||||||
Sbjct 1372 CAATCTCAAAAATACCAGGCTGAATTCCCCATGGGTCCTGTGACCTCAGCCCATGCGGGGACCTACAGGTGCTA 1445
Query 1194 CGGCTCACTCAGCTCCAACCCCTACCTGCTGTCTCACCCCAGTGACTCCCTGGAGCTCATGGTCTCAGGAGCAG 1267
||||||||..||||||||.||||||||||||.||||||||||||||.|||||||||||.|||||||||||.|..
Sbjct 1446 CGGCTCACAGAGCTCCAAACCCTACCTGCTGACTCACCCCAGTGACCCCCTGGAGCTCGTGGTCTCAGGACCGT 1519
Query 1268 CTGAGACCCTCAGC-CCACCACAAAACAAGTCCGA-TTCCA-------AGGC----TGGAGCAGCTAACACCCT 1328
|||.|..||.|||| ||.|.|| ||||.|.||.| .|||| |||| .|||.|||| ||||
Sbjct 1520 CTGGGGGCCCCAGCTCCCCGAC--AACAGGCCCCACCTCCACATCTGCAGGCCCTGAGGACCAGC-----CCCT 1586
Query 1329 CAGCCCATCACAAAACAAGACTGCCTCACACCCCCAGGATTACACAGTGGAGAATCT-------CATCCG---- 1391
||.||| .||.|..||..|.|||||| ||||| ||| ||.|.|
Sbjct 1587 CACCCC------------CACCGGGTCGGATCCCCAG--------AGTGG----TCTGGGAAGGCACCTGGGGG 1636
Query 1392 ----CATGGGCATAGCTGGCTTGG---------TCCTGGTGGTCCTC--------------------------- 1425
.||.||||| ||||| ||||..||.|||||
Sbjct 1637 TTGTGATCGGCAT------CTTGGTGGCCGTCATCCTACTGCTCCTCCTCCTCCTCCTCCTCTTCCTCATCCTC 1704
Query 1426 --------------GGG---ATTCT--------------------GCT-ATTT-------------GAGGCT-- 1446
||| |..|| ||| |||| |.||||
Sbjct 1705 CGACATCGACGTCAGGGCAAACACTGGACATCGACCCAGAGAAAGGCTGATTTCCAACATCCTGCAGGGGCTGT 1778
Query 1447 -----CAG----CACAGCCAGAGAAGCCTC-------------------------------------------- 1467
||| |||||.||||| ||||.
Sbjct 1779 GGGGCCAGAGCCCACAGACAGAG--GCCTGCAGTGGAGGTCCAGCCCAGCTGCCGATGCCCAGGAAGAAAACCT 1850
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 1851 CTATGCTGCCGTGAAGCACACACAGCCTGAGGATGGGGTGGAGATGGACACTCGGCAGAGCCCACACGATGAAG 1924
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 1925 ACCCCCAGGCAGTGACGTATGCCGAGGTGAAACACTCCAGACCTAGGAGAGAAATGGCCTCTCCTCCTTCCCCA 1998
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 1999 CTGTCTGGGGAATTCCTGGACACAAAGGACAGACAGGCGGAAGAGGACAGGCAGATGGACACTGAGGCTGCTGC 2072
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2073 ATCTGAAGCCCCCCAGGATGTGACCTACGCCCAGCTGCACAGCTTGACCCTCAGACGGGAGGCAACTGAGCCTC 2146
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2147 CTCCATCCCAGGAAGGGCCCTCTCCAGCTGTGCCCAGCATCTACGCCACTCTGGCCATCCACTAGCCCAGGGGG 2220
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2221 GGACGCAGACCCCACACTCCATGGAGTCTGGAATGCATGGGAGCTGCCCCCCCAGTGGACACCATTGGACCCCA 2294
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2295 CCCAGCCTGGATCTACCCCAGGAGACTCTGGGAACTTTTAGGGGTCACTCAATTCTGCAGTATAAATAACTAAT 2368
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2369 GTCTCTACAATTTTGAAATAAAGCAACAGACTTCTCAATAATCAATGAAGTAGCTGAGAAAACTAAGTCAGAAA 2442
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2443 GTGCATTAAACTGAATCACAATGTAAATATTACACATCAAGCGATGAAACTGGAAAACTACAAGCCACGAATGA 2516
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2517 ATGAATTAGGAAAGAAAAAAAGTAGGAAATGAATGATCTTGGCTTTCCTATAAGAAATTTAGGGCAGGGCACGG 2590
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2591 TGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACGAGTTCAGGAGATCGAGACCAT 2664
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2665 CTTGGCCAACATGGTGAAACCCTGTCTCTCCTAAAAATACAAAAATTAGCTGGATGTGGTGGCAGTGCCTGTAA 2738
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2739 TCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCAGGGAGTCAGAGGTTTCAGTGAGCCAAGATC 2812
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2813 GCACCACTGCTCTCCAGCCTGGCGACAGAGGGAGACTCCATCTCAAATTAAAAAAAAAAAAAAAAAAGAAAGAA 2886
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2887 AAAGAGAAAAAAGAAATTTAGAAGAATAACAAGTTATTCCAAATGAAGGCGTAAGAAAGGGAATAATAACAATA 2960
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2961 ATAAGAGGAGTTGTTCATGAGGAAAAACCAAAGCTTGAAAATTCAACAAAGCCAGTGAAGCTCATTCTTGAAAA 3034
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3035 CATGAATCACACTCATGAATTCTAACTACAATGAAAAAGAGAAAGAAAGAGCAGGCATGCATTTCCATATGGGA 3108
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3109 GTGAGCCAGCAGACAGCCCTACAGATCGTACACACGTTTTCCAAAACTAACAATGGAACAGGCGGCAAACCTAT 3182
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3183 GCCAATATACTAGAAATTGCAGATTAAATAGATGAAATATTCTAAACTGGAGTTTACATAATGAACATAAGAGT 3256
Query 1468 -- 1467
Sbjct 3257 AA 3258
