Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02724
- Subject:
- XR_001755675.2
- Aligned Length:
- 5740
- Identities:
- 1116
- Gaps:
- 4622
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTTCTCTTTGTCGGAGGAGCTCCTCTGTTTCCTGTGCAGTAGCTCCCGTTGCGGCGGCACCCGTGGCAGCCC 74
Query 1 -----------------ATGGCAGCGACCGATATAGCTCGCCAGGTGGGTGAAGGTTGCCGAACTGTCCCCCTG 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TGGCGGACGCAGGAGCGATGGCAGCGACCGATATAGCTCGCCAGGTGGGTGAAGGTTGCCGAACTGTCCCCCTG 148
Query 58 GCTGGACATGTGGGGTTTGACAGCTTGCCTGACCAGCTGGTGAATAAGTCCGTCAGCCAGGGCTTCTGCTTCAA 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCTGGACATGTGGGGTTTGACAGCTTGCCTGACCAGCTGGTGAATAAGTCCGTCAGCCAGGGCTTCTGCTTCAA 222
Query 132 CATCCTGTGCGTGGGAGAGACAGGTTTGGGCAAGTCCACCCTCATGGACACCCTGTTCAACACCAAATTCGAAG 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CATCCTGTGCGTGGGAGAGACAGGTTTGGGCAAGTCCACCCTCATGGACACCCTGTTCAACACCAAATTCGAAG 296
Query 206 GGGAGCCAGCCACCCACACACAGCCGGGTGTCCAGCTCCAGTCTAATACCTATGACCTCCAAGAGAGCAACGTG 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGGAGCCAGCCACCCACACACAGCCGGGTGTCCAGCTCCAGTCTAATACCTATGACCTCCAAGAGAGCAACGTG 370
Query 280 AGGCTAAAGCTCACGATCGTTAGCACAGTTGGCTTTGGGGACCAGATCAACAAAGAGGACAGCTACAAGCCTAT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGGCTAAAGCTCACGATCGTTAGCACAGTTGGCTTTGGGGACCAGATCAACAAAGAGGACAGCTACAAGCCTAT 444
Query 354 CGTGGAATTCATCGATGCACAATTCGAGGCCTACCTGCAGGAAGAGCTAAAGATCCGAAGAGTGCTACACACCT 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CGTGGAATTCATCGATGCACAATTCGAGGCCTACCTGCAGGAAGAGCTAAAGATCCGAAGAGTGCTACACACCT 518
Query 428 ACCATGACTCCCGAATCCATGTCTGCTTGTATTTCATTGCCCCCACGGGTCATTCCCTGAAGTCTCTGGACCTA 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACCATGACTCCCGAATCCATGTCTGCTTGTATTTCATTGCCCCCACGGGTCATTCCCTGAAGTCTCTGGACCTA 592
Query 502 GTGACTATGAAGAAGCTGGACAGTAAGGTGAACATCATCCCCATCATTGCCAAAGCAGATGCCATTTCGAAGAG 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTGACTATGAAGAAGCTGGACAGTAAGGTGAACATCATCCCCATCATTGCCAAAGCAGATGCCATTTCGAAGAG 666
Query 576 TGAGCTAACAAAGTTCAAAATCAAAATCACCAGCGAGCTTGTCAGCAACGGAGTCCAGATCTATCAGTTTCCTA 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGAGCTAACAAAGTTCAAAATCAAAATCACCAGCGAGCTTGTCAGCAACGGAGTCCAGATCTATCAGTTTCCTA 740
Query 650 CAGATGATGAGTCGGTGGCAGAGATCAATGGAACCATGAACGCCCACCTGCCGTTTGCTGTCATTGGCAGCACA 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CAGATGATGAGTCGGTGGCAGAGATCAATGGAACCATGAACGCCCACCTGCCGTTTGCTGTCATTGGCAGCACA 814
Query 724 GAAGAACTGAAGATAGGCAACAAGATGATGAGGGCGCGGCAGTATCCTTGGGGCACTGTGCAGGTTGAAAACGA 797
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GAAGAACTGAAGATAGGCAACAAGATGATGAGGGCGCGGCAGTATCCTTGGGGCACTGTGCAG----------- 877
Query 798 GGCCCACTGCGACTTTGTGAAGCTGCGGGAGATGCTGATTCGGGTCAACATGGAGGATCTGCGGGAGCAGACCC 871
Sbjct 878 -------------------------------------------------------------------------- 877
Query 872 ACACCCGGCACTATGAGCTGTATCGCCGCTGTAAGCTGGAGGAGATGGGCTTCAAGGACACCGACCCTGACAGC 945
Sbjct 878 -------------------------------------------------------------------------- 877
Query 946 AAACCCTTCAGTTTACAGGAGACATATGAGGCCAAAAGGAACGAGTTCCTAGGGGAACTCCAGAAAAAAGAAGA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 ----------GTTTACAGGAGACATATGAGGCCAAAAGGAACGAGTTCCTAGGGGAACTCCAGAAAAAAGAAGA 941
Query 1020 GGAGATGAGACAGATGTTCGTCCAGCGAGTCAAAGAGAAAGAAGCGGAGCTCAAAGAGGCAGAGAAAGAGCTGC 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GGAGATGAGACAGATGTTCGTCCAGCGAGTCAAAGAGAAAGAAGCGGAGCTCAAAGAGGCAGAGAAAGAGCTGC 1015
Query 1094 ACGAGAAGTTTGACCGTCTGAAGAAACTGCACCAGGACGAGAAGAAGAAACTGGAGGATAAGAAGAAATCCCTG 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ACGAGAAGTTTGACCGTCTGAAGAAACTGCACCAGGACGAGAAGAAGAAACTGGAGGATAAGAAGAAATCCCTG 1089
Query 1168 GATGATGAAGTGAATGCTTTCAAGCAAAGAAAGACGGCGGCTGAGCTGCTCCAGTCCCAGGGCTCCCAGGCTGG 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 GATGATGAAGTGAATGCTTTCAAGCAAAGAAAGACGGCGGCTGAGCTGCTCCAGTCCCAGGGCTCCCAGGCTGG 1163
Query 1242 AGGCTCACAGACTCTGAAGAGAGACAAAGAGAAGAAAAACT--------TTTTT-------------------- 1287
|||||||||||||||||||||||||||||||||||||||.| |.|||
Sbjct 1164 AGGCTCACAGACTCTGAAGAGAGACAAAGAGAAGAAAAATTAACTCTGCTGTTTGCTGCATGCTGCATGAGACC 1237
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 1238 CAGGGTCCTGTTTGGGCTTCCTGTAGACACCCTTTTCCTGCGCAACAGAGCTGGGCCTCCCTTTCTCTAATTTC 1311
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 1312 CCCCTTAACATGCCTGGGGGGCATACAATCCAACCCGCGCCCTCTCCTCTCTTCCTGCCAAGGTTTATAGAAAC 1385
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 1386 CTGAGAATCTGAGGGTGATGTCTGGCCGCTGGTCAAGAAGCCAACAGTCATGTGGCTCGCAGATGCATCCTGCA 1459
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 1460 TCCCAGTCCCCCTCCCAGCACCCCCAGCCATCCCCCCTGTCTTCCCCCACATCTTTGCCAGAGGTGTGACATGG 1533
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 1534 TCAGGGGGCCCATCTGCTACTCTTTCCCACCAGCTCCCCTGTTCCAGTTCTGGTTGCTGTTAGTTTCCCTGAGG 1607
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 1608 TATTTGCAACCACCATGGCTGGGTAACCACCGATCAGCACAGCTGTCCCCTTGGTCTCCTGTATCCCAGTCACT 1681
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 1682 AGTCCTCCCTGGTCCACCCCACCCTCATCCTCAGGAGCCACAGCCATTTCTTAGAGGGTTTCAAAAGGACAGCC 1755
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 1756 TTTGGCGCCTTTTCCTTCTAACCTTTGAGTCCAGCCCTTTCCAGTTTTCATTCACTCGAAGTAACTGCACTCAA 1829
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 1830 GCTGTGCTCAAAATCGGCAACGCATTTATTTACACCAAGCCCTTCCCATAAAACACAACTGCTGAAGAAAATAG 1903
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 1904 CAGACGTTTCCCCTCTCTCTAACTCTGGGTATCCCACAGATGCAAAAGGGAGAATAAACCTGAATATTATTACC 1977
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 1978 AGCCTAGAGTCTTGAATGATAGCCTTACCGAATTCTTCTTGTGAGGTATTTCAGCATCTCGGGGGGTAATTTCC 2051
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 2052 GGAAGGGCTCCATACTGTCCCAATAAGGTGAGGCCAGTAGCAGGAATAATAAATCCCACTTTGTAGGCTGGAAA 2125
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 2126 ACTGAGCTGTCAAAAGAATCAAGTGTTTGGGGGTTTGCTCTGATGAGTCTTCTAGTTCATTTGGTGAATGTCAT 2199
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 2200 GATGATTTTTAACATGCATTTTGCATGCATCCCCCAATAAGAAGAGATGAGACTCGGCCGGAGAGAAGAAAAGG 2273
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 2274 CCCTTAACTTTCTTTCCAATTTAAGGAGTTGAGAGTTTAAAAATATTCCAGCCCTAAGTTTTTATCATGGGTCC 2347
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 2348 CATCTGATAGTGGCTTTGGGAACCTCTGTGAAGTAGAGAGCCCTCCCTTGTCAGGGTTATGAGGCACAGTGGCC 2421
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 2422 TTTGGTGTTTGGCCAGTGACAGTGTGAGAGATGGAGTTGACCTGGCAATGATCTGTGGCTAACATGCCGTCTCT 2495
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 2496 CTGCCCTTCCTTTGCAGTAATCCATGGCTGTGTACTGAATAGTATTCCCCGCTACAGCTGGACTGGACTCCATT 2569
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 2570 TAGCCTTTTAAGCCGAGGTTCCTATTTTAACTGACAGCTTTCCTTTGGGGTGCCAGGCAGCGAGGCCCCCCACC 2643
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 2644 CCTATCCTGCCATGTACTTCAAGCTCACTTCTTCTTTTTGAGTTCCGCAACTTGCTCCTGCCTCCCAGCCCCAC 2717
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 2718 TGGCACTGACCATGACCACCTACTTCTATTTTTTTTTTAGAGTTTCTTTTTTTGATCACTTACTTTCAAAGCAC 2791
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 2792 ACAGTCAAACAAGGTTATGCCAAATTTCCAGGCCTTTTTGAAGTATTGAGAAGGGGAAGGGGATTTCTCACTTC 2865
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 2866 AATTATAGATCATAATAGGAAGCAAAAAGAAAAAAATGAAAAGCAAACATATGCACGCACTTTTCTTGTTGACA 2939
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 2940 AAGCAAGAATATAGGTTTGCTGTGTAGGTTTGGTGCTCTATTGATTGGTGAGTGACCAGAGCAAGTATGAAGGT 3013
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 3014 GATGCTGCCAAAGCACAAGCCAGTTTCTTGGGAAAATTCAAGTTACAGTGGAGTATTTTTTTGAAGACCATATG 3087
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 3088 CTTGGAGGTAGAAACAAACCAACGACCAAAAAAAAAAAAAAAAAAATCTGCTCAGATACTCAGCCAGTAGCTCA 3161
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 3162 GAGAGATGCTGAGTTAGGCCTGTCAGGTCTCCTTGGGAAAGGCTTCATATTTGCAACTTTGATGATTCTATGTC 3235
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 3236 CAGCTTCAGAGCTGCTTTCCCAGAAATTCACGCTTAAACAACCAACCGGTAACCACCACTTCCCCACACCGCCG 3309
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 3310 CCCGGTAATTATTTGCATTACAAACCGGAGGCGCCCTCATTTGCATTTGTGTACAGATTAACTAGTTAAGGCTT 3383
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 3384 GAGAAGCTCTGAATAATTCAAAAGTATTAGACCCACACAGCCTTGGAGAGACCTTCAGAAACTAAGGAGGAGTT 3457
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 3458 TTATATTAAGGGAGACATTTTAGTCAGTAAGACGATATAACCTACTTACTCCGTAAGGGGAAATGAAGGCCCAG 3531
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 3532 AGAAGGGAAGGGACTTGACCGAGGTCCCACTTCTGTTTCGAGGCAGAAGCCAGACTAATTTTCATGCCTCCTGA 3605
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 3606 CTCCCAATCAGTTTCACAAAGGGATTCAATCTGTTTATATACGTTACATTCCTGGATACGAGGTCTTTTGATGT 3679
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 3680 TCAGAGTAACTGACTAGTTAGTATTAGAAGACCCTCGAGGTTTTTTTCCACAGAAAAACATCTGAAGATGGATT 3753
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 3754 GGGTGAGGGCTGGCAAAACGAAGGCATGCCGGGCCAGCTCCTTAACCCAATGACCCAGTGATGCTGCAAGGCTG 3827
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 3828 GAACGGGGTCCAGGAGACTGTGTGTAACAGGTGCCCTAGGTGACCCTTATAATCAGGGAAGTTTGGTGAACAAA 3901
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 3902 AATCGAACCCATGAGTGAACATAAATTAAAAAGTTGATCAACCTATTAAAATGTGTATTTCATTGGGTAGCTTT 3975
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 3976 TCTCACTGTAGACAGATTTTTTCCTTCTTCAATGAAAAGGCTTTTAAATTAGTACAACTGTTACTATTTAAAAA 4049
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 4050 AAAAATACCCTAAGTACTCTGTTTACTTCTGGTGAAACAAAACCAGTCATTAGAAATGGTCTGTGCTTTTATTT 4123
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 4124 TCCCAGACTGGAGTGGCTTTTCTGAAACACACACACACACACACACACACACACACACACACACACACACACAC 4197
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 4198 ACGTACACACATCCCTCACTTCTCTTAAGCCAAGAAGTTTGCTTTCCCTAGCTGCAGTGTAGATGGCTCTTGTT 4271
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 4272 TTTGTTTTTTTGTTTTAATCATTTGGCATTCACATGTGGCTGTTAATATGTGCTTGTTTTTAATTAAAACAAGA 4345
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 4346 AGCTTTAAACTGGTGTGTGGTGTTCTTAAAACCTTCTCAGCAGATTTCCCCGTGGTGATGGCCCAGCAATGACC 4419
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 4420 CCCATTTCTAACCTGTCTTCTCACACTACAATCTGTGCTACCTCAATATTGCCCATTCCCCTCCCCCTGTCTTA 4493
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 4494 CTTTGAATGTCCTCTTTCTTTGGCTAATTTCATGTTTTCTTTCTCTTTCTCTCTCCTTTCCAGCTTTTTTTAAT 4567
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 4568 CTTGTCTTCAGCAGCTGCACTAAGTCTAAAGGAGAAGACTGCCATTATAGAAGAGTTAGGGTTCCATATTGTCT 4641
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 4642 CAAATCAGAAATCAACCAATTTCCTCTCCCCTCAAACTGCAAGCACACACACATACACCACACCACTCAACAAG 4715
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 4716 TGTTCATGTGTCCCTGTGTCCAGGCAAGAAGCTCTCTTCCTGACTCACATGGTATTTTAAATGGAAGTGTCTTG 4789
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 4790 TCCTAACTAACAAGGCAGGAAAAGAACCATCAGAGCTGGAAAATGGACGAAATGTAACCTCAGAGAAACAACTA 4863
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 4864 CAGGACCACTCACCCAAGTGTAAGTGACTGGGGCAGGACACCTCAGCTGTGGGTATGAAAGTACTGTTCTGTTC 4937
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 4938 ACAAGGTTTTGTTTGAGTTTTATGTTTTTCTTTTAAACATTTCTCTGGTTCGATGGGTTGACTGTCTACAGCCA 5011
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 5012 CTGTTAAACATTTCTGAATATGCAAGAGAAAGTCAAGTGACATTTGTATCTTCTTCAGCATTCGCAGACCTTCT 5085
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 5086 ATAGATTCCAGCAAAGGGGGAAAATGTATCCACTATCTAACACTTAGGTAGAGAAGGGAGGGGGTTTAAGCTTA 5159
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 5160 GTGAGGGCAAAATTACTCCATTCCACCTTCCGAGACCAGTTAGGGTTTTGAGAGAGGTTTCTGCTCAACCTGGG 5233
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 5234 ATCTGGAGGGAGAGCTTTGATGTTGGTAAATCTGCCTTGAATTCATTGGTTTAACTTGCATCAAAATACCATGT 5307
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 5308 GAGTGTGCTCATTCTCATATATCCCCTACCACCATCACCACCATTCTGCTGTTCAGTGTCTCTTGAGAGAGCCT 5381
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 5382 CTTTGCATGTTTTCCAGAATCTGTGTGTGTTTTTCCTTTCTTCTCCTTTGTTCTTTTTGCTCAAAGGTGTGACC 5455
Query 1288 -------------------------------------------------------------------------- 1287
Sbjct 5456 AGTCATTGCCCCTCTGGGGCTTTCATTCTCCAGGAGAAACATCCCAGAACCAGCACTGTTTAGCCTGATACCTT 5529
Query 1288 ------------------------------------------ 1287
Sbjct 5530 TCTAATGTCCATGTCAATTTTCAATAAAATTCAAAGAAATGC 5571
