Nucleotide Global Alignment

Description

Query:
ccsbBroad304_02724
Subject:
XR_001755676.2
Aligned Length:
4434
Identities:
1115
Gaps:
3316

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTTTCTCTTTGTCGGAGGAGCTCCTCTGTTTCCTGTGCAGTAGCTCCCGTTGCGGCGGCACCCGTGGCAGCCC  74

Query    1  -----------------ATGGCAGCGACCGATATAGCTCGCCAGGTGGGTGAAGGTTGCCGAACTGTCCCCCTG  57
                             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TGGCGGACGCAGGAGCGATGGCAGCGACCGATATAGCTCGCCAGGTGGGTGAAGGTTGCCGAACTGTCCCCCTG  148

Query   58  GCTGGACATGTGGGGTTTGACAGCTTGCCTGACCAGCTGGTGAATAAGTCCGTCAGCCAGGGCTTCTGCTTCAA  131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GCTGGACATGTGGGGTTTGACAGCTTGCCTGACCAGCTGGTGAATAAGTCCGTCAGCCAGGGCTTCTGCTTCAA  222

Query  132  CATCCTGTGCGTGGGAGAGACAGGTTTGGGCAAGTCCACCCTCATGGACACCCTGTTCAACACCAAATTCGAAG  205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CATCCTGTGCGTGGGAGAGACAGGTTTGGGCAAGTCCACCCTCATGGACACCCTGTTCAACACCAAATTCGAAG  296

Query  206  GGGAGCCAGCCACCCACACACAGCCGGGTGTCCAGCTCCAGTCTAATACCTATGACCTCCAAGAGAGCAACGTG  279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGGAGCCAGCCACCCACACACAGCCGGGTGTCCAGCTCCAGTCTAATACCTATGACCTCCAAGAGAGCAACGTG  370

Query  280  AGGCTAAAGCTCACGATCGTTAGCACAGTTGGCTTTGGGGACCAGATCAACAAAGAGGACAGCTACAAGCCTAT  353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGGCTAAAGCTCACGATCGTTAGCACAGTTGGCTTTGGGGACCAGATCAACAAAGAGGACAGCTACAAGCCTAT  444

Query  354  CGTGGAATTCATCGATGCACAATTCGAGGCCTACCTGCAGGAAGAGCTAAAGATCCGAAGAGTGCTACACACCT  427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CGTGGAATTCATCGATGCACAATTCGAGGCCTACCTGCAGGAAGAGCTAAAGATCCGAAGAGTGCTACACACCT  518

Query  428  ACCATGACTCCCGAATCCATGTCTGCTTGTATTTCATTGCCCCCACGGGTCATTCCCTGAAGTCTCTGGACCTA  501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ACCATGACTCCCGAATCCATGTCTGCTTGTATTTCATTGCCCCCACGGGTCATTCCCTGAAGTCTCTGGACCTA  592

Query  502  GTGACTATGAAGAAGCTGGACAGTAAGGTGAACATCATCCCCATCATTGCCAAAGCAGATGCCATTTCGAAGAG  575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTGACTATGAAGAAGCTGGACAGTAAGGTGAACATCATCCCCATCATTGCCAAAGCAGATGCCATTTCGAAGAG  666

Query  576  TGAGCTAACAAAGTTCAAAATCAAAATCACCAGCGAGCTTGTCAGCAACGGAGTCCAGATCTATCAGTTTCCTA  649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TGAGCTAACAAAGTTCAAAATCAAAATCACCAGCGAGCTTGTCAGCAACGGAGTCCAGATCTATCAGTTTCCTA  740

Query  650  CAGATGATGAGTCGGTGGCAGAGATCAATGGAACCATGAACGCCCACCTGCCGTTTGCTGTCATTGGCAGCACA  723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAGATGATGAGTCGGTGGCAGAGATCAATGGAACCATGAACGCCCACCTGCCGTTTGCTGTCATTGGCAGCACA  814

Query  724  GAAGAACTGAAGATAGGCAACAAGATGATGAGGGCGCGGCAGTATCCTTGGGGCACTGTGCAGGTTGAAAACGA  797
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct  815  GAAGAACTGAAGATAGGCAACAAGATGATGAGGGCGCGGCAGTATCCTTGGGGCACTGTGCAG-----------  877

Query  798  GGCCCACTGCGACTTTGTGAAGCTGCGGGAGATGCTGATTCGGGTCAACATGGAGGATCTGCGGGAGCAGACCC  871
                                                                                      
Sbjct  878  --------------------------------------------------------------------------  877

Query  872  ACACCCGGCACTATGAGCTGTATCGCCGCTGTAAGCTGGAGGAGATGGGCTTCAAGGACACCGACCCTGACAGC  945
                                                                                      
Sbjct  878  --------------------------------------------------------------------------  877

Query  946  AAACCCTTCAGTTTACAGGAGACATATGAGGCCAAAAGGAACGAGTTCCTAGGGGAACTCCAGAAAAAAGAAGA  1019
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  878  ----------GTTTACAGGAGACATATGAGGCCAAAAGGAACGAGTTCCTAGGGGAACTCCAGAAAAAAGAAGA  941

Query 1020  GGAGATGAGACAGATGTTCGTCCAGCGAGTCAAAGAGAAAGAAGCGGAGCTCAAAGAGGCAGAGAAAGAGCTGC  1093
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  942  GGAGATGAGACAGATGTTCGTCCAGCGAGTCAAAGAGAAAGAAGCGGAGCTCAAAGAGGCAGAGAAAGAGCTGC  1015

Query 1094  ACGAGAAGTTTGACCGTCTGAAGAAACTGCACCAGGACGAGAAGAAGAAACTGGAGGATAAGAAGAAATCCCTG  1167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016  ACGAGAAGTTTGACCGTCTGAAGAAACTGCACCAGGACGAGAAGAAGAAACTGGAGGATAAGAAGAAATCCCTG  1089

Query 1168  GATGATGAAGTGAATGCTTTCAAGCAAAGAAAGACGGCGGCTGAGCTGCTCCAGTCCCAGGGCTCCCAGGCTGG  1241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090  GATGATGAAGTGAATGCTTTCAAGCAAAGAAAGACGGCGGCTGAGCTGCTCCAGTCCCAGGGCTCCCAGGCTGG  1163

Query 1242  AGGCTCACAGACTCTGAAGAGAGACAAAGAGAAGAAAAA----------CTTTTTT------------------  1287
            |||||||||||||||||||||||||||||||||||||||          ||.|.|.                  
Sbjct 1164  AGGCTCACAGACTCTGAAGAGAGACAAAGAGAAGAAAAATAATCCATGGCTGTGTACTGAATAGTATTCCCCGC  1237

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 1238  TACAGCTGGACTGGACTCCATTTAGCCTTTTAAGCCGAGGTTCCTATTTTAACTGACAGCTTTCCTTTGGGGTG  1311

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 1312  CCAGGCAGCGAGGCCCCCCACCCCTATCCTGCCATGTACTTCAAGCTCACTTCTTCTTTTTGAGTTCCGCAACT  1385

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 1386  TGCTCCTGCCTCCCAGCCCCACTGGCACTGACCATGACCACCTACTTCTATTTTTTTTTTAGAGTTTCTTTTTT  1459

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 1460  TGATCACTTACTTTCAAAGCACACAGTCAAACAAGGTTATGCCAAATTTCCAGGCCTTTTTGAAGTATTGAGAA  1533

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 1534  GGGGAAGGGGATTTCTCACTTCAATTATAGATCATAATAGGAAGCAAAAAGAAAAAAATGAAAAGCAAACATAT  1607

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 1608  GCACGCACTTTTCTTGTTGACAAAGCAAGAATATAGGTTTGCTGTGTAGGTTTGGTGCTCTATTGATTGGTGAG  1681

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 1682  TGACCAGAGCAAGTATGAAGGTGATGCTGCCAAAGCACAAGCCAGTTTCTTGGGAAAATTCAAGTTACAGTGGA  1755

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 1756  GTATTTTTTTGAAGACCATATGCTTGGAGGTAGAAACAAACCAACGACCAAAAAAAAAAAAAAAAAAATCTGCT  1829

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 1830  CAGATACTCAGCCAGTAGCTCAGAGAGATGCTGAGTTAGGCCTGTCAGGTCTCCTTGGGAAAGGCTTCATATTT  1903

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 1904  GCAACTTTGATGATTCTATGTCCAGCTTCAGAGCTGCTTTCCCAGAAATTCACGCTTAAACAACCAACCGGTAA  1977

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 1978  CCACCACTTCCCCACACCGCCGCCCGGTAATTATTTGCATTACAAACCGGAGGCGCCCTCATTTGCATTTGTGT  2051

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 2052  ACAGATTAACTAGTTAAGGCTTGAGAAGCTCTGAATAATTCAAAAGTATTAGACCCACACAGCCTTGGAGAGAC  2125

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 2126  CTTCAGAAACTAAGGAGGAGTTTTATATTAAGGGAGACATTTTAGTCAGTAAGACGATATAACCTACTTACTCC  2199

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 2200  GTAAGGGGAAATGAAGGCCCAGAGAAGGGAAGGGACTTGACCGAGGTCCCACTTCTGTTTCGAGGCAGAAGCCA  2273

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 2274  GACTAATTTTCATGCCTCCTGACTCCCAATCAGTTTCACAAAGGGATTCAATCTGTTTATATACGTTACATTCC  2347

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 2348  TGGATACGAGGTCTTTTGATGTTCAGAGTAACTGACTAGTTAGTATTAGAAGACCCTCGAGGTTTTTTTCCACA  2421

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 2422  GAAAAACATCTGAAGATGGATTGGGTGAGGGCTGGCAAAACGAAGGCATGCCGGGCCAGCTCCTTAACCCAATG  2495

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 2496  ACCCAGTGATGCTGCAAGGCTGGAACGGGGTCCAGGAGACTGTGTGTAACAGGTGCCCTAGGTGACCCTTATAA  2569

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 2570  TCAGGGAAGTTTGGTGAACAAAAATCGAACCCATGAGTGAACATAAATTAAAAAGTTGATCAACCTATTAAAAT  2643

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 2644  GTGTATTTCATTGGGTAGCTTTTCTCACTGTAGACAGATTTTTTCCTTCTTCAATGAAAAGGCTTTTAAATTAG  2717

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 2718  TACAACTGTTACTATTTAAAAAAAAAATACCCTAAGTACTCTGTTTACTTCTGGTGAAACAAAACCAGTCATTA  2791

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 2792  GAAATGGTCTGTGCTTTTATTTTCCCAGACTGGAGTGGCTTTTCTGAAACACACACACACACACACACACACAC  2865

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 2866  ACACACACACACACACACACACACGTACACACATCCCTCACTTCTCTTAAGCCAAGAAGTTTGCTTTCCCTAGC  2939

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 2940  TGCAGTGTAGATGGCTCTTGTTTTTGTTTTTTTGTTTTAATCATTTGGCATTCACATGTGGCTGTTAATATGTG  3013

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 3014  CTTGTTTTTAATTAAAACAAGAAGCTTTAAACTGGTGTGTGGTGTTCTTAAAACCTTCTCAGCAGATTTCCCCG  3087

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 3088  TGGTGATGGCCCAGCAATGACCCCCATTTCTAACCTGTCTTCTCACACTACAATCTGTGCTACCTCAATATTGC  3161

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 3162  CCATTCCCCTCCCCCTGTCTTACTTTGAATGTCCTCTTTCTTTGGCTAATTTCATGTTTTCTTTCTCTTTCTCT  3235

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 3236  CTCCTTTCCAGCTTTTTTTAATCTTGTCTTCAGCAGCTGCACTAAGTCTAAAGGAGAAGACTGCCATTATAGAA  3309

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 3310  GAGTTAGGGTTCCATATTGTCTCAAATCAGAAATCAACCAATTTCCTCTCCCCTCAAACTGCAAGCACACACAC  3383

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 3384  ATACACCACACCACTCAACAAGTGTTCATGTGTCCCTGTGTCCAGGCAAGAAGCTCTCTTCCTGACTCACATGG  3457

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 3458  TATTTTAAATGGAAGTGTCTTGTCCTAACTAACAAGGCAGGAAAAGAACCATCAGAGCTGGAAAATGGACGAAA  3531

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 3532  TGTAACCTCAGAGAAACAACTACAGGACCACTCACCCAAGTGTAAGTGACTGGGGCAGGACACCTCAGCTGTGG  3605

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 3606  GTATGAAAGTACTGTTCTGTTCACAAGGTTTTGTTTGAGTTTTATGTTTTTCTTTTAAACATTTCTCTGGTTCG  3679

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 3680  ATGGGTTGACTGTCTACAGCCACTGTTAAACATTTCTGAATATGCAAGAGAAAGTCAAGTGACATTTGTATCTT  3753

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 3754  CTTCAGCATTCGCAGACCTTCTATAGATTCCAGCAAAGGGGGAAAATGTATCCACTATCTAACACTTAGGTAGA  3827

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 3828  GAAGGGAGGGGGTTTAAGCTTAGTGAGGGCAAAATTACTCCATTCCACCTTCCGAGACCAGTTAGGGTTTTGAG  3901

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 3902  AGAGGTTTCTGCTCAACCTGGGATCTGGAGGGAGAGCTTTGATGTTGGTAAATCTGCCTTGAATTCATTGGTTT  3975

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 3976  AACTTGCATCAAAATACCATGTGAGTGTGCTCATTCTCATATATCCCCTACCACCATCACCACCATTCTGCTGT  4049

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 4050  TCAGTGTCTCTTGAGAGAGCCTCTTTGCATGTTTTCCAGAATCTGTGTGTGTTTTTCCTTTCTTCTCCTTTGTT  4123

Query 1288  --------------------------------------------------------------------------  1287
                                                                                      
Sbjct 4124  CTTTTTGCTCAAAGGTGTGACCAGTCATTGCCCCTCTGGGGCTTTCATTCTCCAGGAGAAACATCCCAGAACCA  4197

Query 1288  --------------------------------------------------------------------  1287
                                                                                
Sbjct 4198  GCACTGTTTAGCCTGATACCTTTCTAATGTCCATGTCAATTTTCAATAAAATTCAAAGAAATGCTAAA  4265

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