Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02745
- Subject:
- NM_001284218.1
- Aligned Length:
- 3701
- Identities:
- 1891
- Gaps:
- 1477
Alignment
Query 1 ATGAGCAAGTTAAAAGTGATACCAGAAAAAAGCCTTACCAATAATTCTAGGATCGTAGGACTCCTGGCTCAACT 74
|||||||||.||||||||.|...|||.||||||||||||||||.||||.||.|.||.||||||||||||||.||
Sbjct 1 ATGAGCAAGCTAAAAGTGGTGGGAGAGAAAAGCCTTACCAATAGTTCTCGGGTTGTGGGACTCCTGGCTCAGCT 74
Query 75 GGAGAAGATCAATGCTGAGCCTTCAGAATCAGACACTGCCCGATATGTTACATCAAAAATTCTTCATCTGGCTC 148
|||||||||||||.|.||..|..||||.|||||.||||||.|||||||||||||.||||||||||||.||||||
Sbjct 75 GGAGAAGATCAATACGGATTCCACAGAGTCAGATACTGCCAGATATGTTACATCCAAAATTCTTCATTTGGCTC 148
Query 149 AGAGTCAAGAAAAAACAAGGAGAGAAATGACAGCCAAAGGTTCTACAGGAATGGAAATTCTGCTGTCAACATTA 222
|.|||||||||||||||||.||.|||||||||.||||||||||||||||.||||||.|||||.||||||||||.
Sbjct 149 AAAGTCAAGAAAAAACAAGAAGGGAAATGACAACCAAAGGTTCTACAGGCATGGAAGTTCTGTTGTCAACATTG 222
Query 223 GAGAACACAAAAGATCTTCAAACTACACTTAATATCTTAAGCATTCTTGTTGAGCTGGTGTCAGCTGGTGGAGG 296
||||||||.|||||||||||.|||..||||||||||.||||||||||..||||||||||||||.|.|||||.||
Sbjct 223 GAGAACACGAAAGATCTTCAGACTGTACTTAATATCCTAAGCATTCTCATTGAGCTGGTGTCATCGGGTGGGGG 296
Query 297 TCGAAGAGTGAGTTTCTTAGTCACCAAAGGTGGTTCACAAATATTGTTGCAGTTACTTATGAATGCCAGCAAAG 370
||||||||.||||||||||||..||||||||||||||||||||.|||||||..|.|||||||||||||||||||
Sbjct 297 TCGAAGAGCGAGTTTCTTAGTTGCCAAAGGTGGTTCACAAATACTGTTGCAACTGCTTATGAATGCCAGCAAAG 370
Query 371 AATCTCCCCCACATGAGGACTTAATGGTACAGATTCATTCTATTCTTGCAAAGATTGGACCAAAAGATAAAAAA 444
|.|||||.|||||||||||..|.|||||.||||.|||.||.||||||||.||||||||.|||||||||||.|||
Sbjct 371 ACTCTCCTCCACATGAGGAGGTGATGGTGCAGACTCACTCCATTCTTGCCAAGATTGGGCCAAAAGATAAGAAA 444
Query 445 TTTGGAGTAAAGGCTAGAATTAATGGGGCTCTGAATATAACCCTGAATTTGGTCAAGCAGAATTTGCAGAATCA 518
||||||||.||.|||.||.||||.|||||.||||.|.|.||.|||||.|||||.||||||.|.||.|||||..|
Sbjct 445 TTTGGAGTGAAAGCTCGAGTTAACGGGGCACTGACTGTGACTCTGAACTTGGTAAAGCAGCACTTTCAGAACTA 518
Query 519 TCGCTTGGTTCTACCTTGCCTTCAGCTTTTACGAGTATATTCTGCCAACTCTGTGAATTCAGTATCCTTAGGGA 592
.|||||||||||.|||||.||||||||.||.|||||.||||||.|||||||||||||.||||||||.|||||.|
Sbjct 519 CCGCTTGGTTCTTCCTTGTCTTCAGCTCTTGCGAGTCTATTCTACCAACTCTGTGAACTCAGTATCTTTAGGTA 592
Query 593 AAAATGGAGTTGTGGAACTGATGTTTAAAATCATTGGACCATTTAGTAAGAAGAATTCCAGTCTTATAAAGGTT 666
||||||||||||||||..|||||||||||||||||||.|||||.||||||||||||||..||||.||.||||||
Sbjct 593 AAAATGGAGTTGTGGAGTTGATGTTTAAAATCATTGGGCCATTCAGTAAGAAGAATTCGGGTCTCATGAAGGTT 666
Query 667 GCTTTAGACACTCTTGCTGCATTGCTAAAATCAAAAACAAATGCCAGGAGAGCTGTAGACAGAGGATATGTCCA 740
|||||||||||||||||||||||||||||||||||.|||||.|||||||||||.||.||||||||.||.||.||
Sbjct 667 GCTTTAGACACTCTTGCTGCATTGCTAAAATCAAAGACAAACGCCAGGAGAGCGGTGGACAGAGGGTACGTTCA 740
Query 741 AGTGCTTTTAACAATTTATGTAGATTGGCACCGCCATGATAACCGGCATAGAAACATGCTCATTCGGAAAGGAA 814
|||||||.||||.||.|||||||||||||||||.||||||||.||||||||||||||||||||||||||.||.|
Sbjct 741 AGTGCTTCTAACCATCTATGTAGATTGGCACCGGCATGATAATCGGCATAGAAACATGCTCATTCGGAAGGGGA 814
Query 815 TTTTACAGAGTTTAAAAAGTGTTACAAACATCAAGTTGGGAAGAAAAGCATTTATTGATGCCAATGGGATGAAA 888
||.|||||||.|||||||||||.||.||||||||||||||.||||||||||||||||||||.||||||||||||
Sbjct 815 TTCTACAGAGCTTAAAAAGTGTCACGAACATCAAGTTGGGCAGAAAAGCATTTATTGATGCGAATGGGATGAAA 888
Query 889 ATTCTGTATAATACTTC--------------------------------------------------------- 905
|||||||||||.|||||
Sbjct 889 ATTCTGTATAACACTTCTCAAGAGTGCTTGGCGGTCAGGACTCTTGATCCTCTTGTCAACACATCCAGTCTGAT 962
Query 906 ---------------------------------------------------------------GCAATTGCCTG 916
.||||||||..
Sbjct 963 AATGAGAAAATGCTTCCCCAAAAACCGCCTTCCGCTCCCCACCATTAAAAGTTCTTTCCACTTCCAATTGCCAA 1036
Query 917 TTATTCCTGTGACTGGTCCTGTGGCTCAGCTCTACAGCTTACCTCCTGAAGTGGATGACGTAGTAGATGAAAGT 990
||||.|||||||||||.||||||||.||||||||||||||.||.|||||||||||.||.||.||.||.||.|||
Sbjct 1037 TTATCCCTGTGACTGGACCTGTGGCCCAGCTCTACAGCTTGCCGCCTGAAGTGGACGATGTGGTGGACGAGAGT 1110
Query 991 GATGACAACGATGATATTGATGTAGAAGCTGAAAACGAAACT-GAGAATGAAGATGACCTAGATCAAAATTTTA 1063
||.||||||||.||.||||||.||||||..|||||.| |||| |||||||||||||||||||||||.|.|||||
Sbjct 1111 GACGACAACGACGACATTGATTTAGAAGTGGAAAATG-AACTCGAGAATGAAGATGACCTAGATCAGAGTTTTA 1183
Query 1064 AGAATGATGATATTGAAACAGATATTAACAAACTAAAACCCCAGCAAGAACCGGGACGAACAATAGAAGATCTA 1137
||||||||||||||||||||||||||||.|||.|||.|||.|||||||.|||.|||||||||||||||||.|||
Sbjct 1184 AGAATGATGATATTGAAACAGATATTAATAAATTAAGACCTCAGCAAGTACCAGGACGAACAATAGAAGAACTA 1257
Query 1138 AAAATGTATGAACACCTTTTCCCTGAGCTTGTTGATGATTTTCAGGACTATGATTTAATCTCCAAAGAACCAAA 1211
||||||||.||.|||||||||||.|||||||||||||||||||||||||||||..|.|||||.||.|||||.||
Sbjct 1258 AAAATGTACGAGCACCTTTTCCCCGAGCTTGTTGATGATTTTCAGGACTATGAACTGATCTCTAAGGAACCCAA 1331
Query 1212 GCCTTTTGTATTTGAGGGAAAAGTACGTGGTCCTATTGTTGTTCCTACGGCAGGCGAGGAAACATCTGGGAATT 1285
.||||||||.||||||||.||.|..||.||.||.|||||.|||||.||.||.||.|||||...|.|||||||||
Sbjct 1332 ACCTTTTGTGTTTGAGGGGAAGGCTCGGGGCCCCATTGTAGTTCCCACAGCTGGAGAGGAGGTACCTGGGAATT 1405
Query 1286 CTGGCA-ATTTAAGAAA--AGTTGTAATGAAG--GAGAACATATCTTCTAAAGGAGATGAAGGTGAAAAGAAGT 1354
|.||.| ..|.|||||| |||.||||||||| ||||.||..|| ||||||||||.||
Sbjct 1406 CAGGGAGCGTAAAGAAAGGAGTGGTAATGAAGGAGAGAGCAAGTC--CTAAAGGAGAGGA-------------- 1463
Query 1355 CTACCTTTATGGATCTAGCAAAAGAAGATATTAAAGATAATGATAGAACATTACAACAGCAGCCAGGTGATCAA 1428
|||.||.|||||...|||.|...|.||.||.|||.|.|..|||||||..||||..||.
Sbjct 1464 ----------------AGCCAAGGAAGACCCTAAGGGCCACGACAGGACACTGCCGCAGCAGCTGGGTGGCCAG 1521
Query 1429 AATAGAACTATTT-----CATCAGTCCATGGTTTAAACAATGATATTGTAAAGGCCTTGGACCGAATTACATTG 1497
|..||| .| |.||||.|||..|.||.|||||||||.||||.||||||.|.||||||||.|||.||
Sbjct 1522 AGCAGA-----GTGGCCCCCTCAGCCCACAGCTTCAACAATGATCTTGTGAAGGCCCTAGACCGAATCACACTG 1590
Query 1498 CAGAATATTCCTTCTCAAACAGCCCCAGGTTTTACTGCAGAAATGAAGAAGGACTGCAGTCTTCCTCTTACTGT 1571
||||||.|||||||.|||..||||.|.||.||.|..||||.|||||.||||||||...||||.|||||.|||||
Sbjct 1591 CAGAATGTTCCTTCGCAAGTAGCCTCGGGCTTGAACGCAGGAATGAGGAAGGACTTTGGTCTCCCTCTCACTGT 1664
Query 1572 CCTTACCTGTGCTAAAGCATGTCCACACATGGCTACTTGTGGAAATGTTCTGTTTGAGGGAAGAACAGTTCAGC 1645
|||..|.||..|.|||||.|||||.|||.||||||..|||||||.|..|||.|||||.||..|.||.||.||.|
Sbjct 1665 CCTCTCATGCACGAAAGCTTGTCCTCACGTGGCTAAGTGTGGAAGTACTCTCTTTGAAGGGCGGACGGTACATC 1738
Query 1646 TAGGGAAGCTTTGCTGCACTGGAGTTGAAACTGAAGATGATGAAGATACTGAGTCAAATTCATCGGTAGAACA- 1718
|.||||||||.||.||.||||||||||||||.||||||||.|||||.||||||||..|.||||| ||||
Sbjct 1739 TTGGGAAGCTGTGTTGTACTGGAGTTGAAACGGAAGATGACGAAGACACTGAGTCCCACTCATC-----AACAG 1807
Query 1719 AGCA-------TCGGTTGAAGTACCTGATGGACCAACACTCCATGACCCAGACCTCTATATTGAGATTGTGAAA 1785
|||| ||.|||||||...||||||||||||||||.||.||||||||||||||||||||||||||||||
Sbjct 1808 AGCAGGCCCCCTCTGTTGAAGCCTCTGATGGACCAACACTGCACGACCCAGACCTCTATATTGAGATTGTGAAA 1881
Query 1786 AATACGAAGTCTGTCCCAGAATATTCAGAGGTGGCTTATCCCGATTATTTTGGTCACATTCCGCCTCCATTCAA 1859
|||||||||||.||.||||||||.|||||||||||||||||.||||||||||||||||||||.|||||.|||||
Sbjct 1882 AATACGAAGTCCGTTCCAGAATACTCAGAGGTGGCTTATCCTGATTATTTTGGTCACATTCCACCTCCCTTCAA 1955
Query 1860 AGAGCCTATTTTAGAAAGGCCTTATGGTGTACAAAGGACAAAAATTGCTCAAGATATTGAAAGGCTAATACATC 1933
||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||.||.|||||.|||||.|
Sbjct 1956 AGAGCCTATTTTAGAAAGGCCTTATGGTGTACAAAGGACAAAAATTGCCCAAGACATCGAGAGGCTGATACACC 2029
Query 1934 AGAGTGATATCATAGATCGTGTGGTATATGACTTGGATAACCCAAATTACACCATTCCAGAAGAGGGAGATATT 2007
|||..|||||||||||.||.|||||.||||||||.||.|||||.|..||.||||.|||||||||.|||||||.|
Sbjct 2030 AGAACGATATCATAGACCGCGTGGTGTATGACTTAGACAACCCTACCTATACCACTCCAGAAGAAGGAGATACT 2103
Query 2008 TTGAAATTTAACTCCAAATTTGAGTCTGGGAATCTGCGCAAAGTAATTCAAATTAGAAAAAATGAATATGATCT 2081
|||||.||||||||.|||||.||.|||||||||||||||||||||||||||||||||||||..||.||.||.||
Sbjct 2104 TTGAAGTTTAACTCAAAATTCGAATCTGGGAATCTGCGCAAAGTAATTCAAATTAGAAAAAGCGAGTACGACCT 2177
Query 2082 TATTCTGAACTCAGACATAAACAGCAATCATTATCATCAGTGGTTTTACTTTGAAGTCAGTGGAATGCGACCAG 2155
|||.||||||||.||.||||||||.||.|||||.||.||||||||.|||||||||||||||||.|||||.||.|
Sbjct 2178 TATCCTGAACTCTGATATAAACAGTAACCATTACCACCAGTGGTTCTACTTTGAAGTCAGTGGGATGCGGCCTG 2251
Query 2156 GTGTTGCTTACAGGTTTAACATCATTAACTGTGAAAAGTCCAACAGTCAGTTTAATTATGGTATGCAACCACTC 2229
||||.||.||.|||||.||||||||.||||||||.||||||||||||||||||||||||| |||.|
Sbjct 2252 GTGTGGCATATAGGTTCAACATCATCAACTGTGAGAAGTCCAACAGTCAGTTTAATTATG--ATGGA------- 2316
Query 2230 ATGTATTCGGTTCAGGAAGCATTAAATGCCAGACCATGGTGGATTCGTATGGGGACTGACATTTGTTACTATAA 2303
||||.| ||| |||||| |
Sbjct 2317 ---------------GAAGAA-------------------------------------ACA--TGTTAC----A 2332
Query 2304 AAATCAT----TTCTCAAGAAGTTCAGTTGCTGCAGGTGGGCAAAAGGGAAAATCCTACTATACAATTACATTT 2373
||||.|| .||||||..|.|| ||||| |||| ||
Sbjct 2333 AAATGATAGTGGTCTCAACTATTT--GTTGC------------AAAG----------AC--------------- 2367
Query 2374 ACTGTCAATTTTCCACATAAAGATGATGTTTGCTACTTTGCTTATCACTATCCATATACGTATTCAACTTTACA 2447
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 2448 GATGCATCTTCAAAAATTGGAATCAGCACACAATCCTCAGCAAATCTATTTTCGGAAAGATGTGTTATGTGAAA 2521
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 2522 CCCTGTCTGGAAACAGCTGCCCCTTGGTGACTATAACAGCAATGCCAGAGTCTAATTATTATGAACATATCTGC 2595
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 2596 CATTTCAGAAATCGCCCTTACGTTTTCTTGTCTGCTCGGGTACATCCTGGAGAAACTAATGCAAGTTGGGTTAT 2669
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 2670 GAAAGGAACGTTGGAATATCTCATGAGCAATAACCCCACTGCTCAGAGCTTACGAGAATCTTATATTTTTAAAA 2743
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 2744 TTGTCCCTATGTTAAATCCAGATGGTGTCATCAATGGAAATCATCGCTGTTCTTTAAGTGGAGAGGATTTGAAT 2817
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 2818 AGGCAGTGGCAAAGTCCAAGTCCGGATTTACATCCTACAATTTACCATGCTAAGGGGCTGTTGCAATACTTGGC 2891
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 2892 TGCAGTGAAGCGTTTACCCTTGGTTTATTGTGATTATCATGGCCATTCCCGAAAGAAGAATGTATTTATGTATG 2965
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 2966 GTTGCAGCATCAAAGAGACAGTGTGGCATACCAATGATAATGCAACTTCATGTGATGTTGTGGAGGATACGGGA 3039
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 3040 TACAGGACATTGCCTAAGATACTGAGCCATATCGCCCCAGCATTTTGCATGAGCAGCTGTAGCTTCGTAGTGGA 3113
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 3114 AAAATCTAAAGAATCCACAGCACGTGTTGTAGTTTGGAGGGAAATAGGAGTACAAAGAAGTTATACCATGGAGA 3187
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 3188 GTACTTTATGTGGCTGTGATCAGGGAAAATACAAGGGTTTACAGATTGGTACCCGAGAACTGGAAGAGATGGGA 3261
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 3262 GCAAAATTTTGTGTTGGTCTTTTACGTTTGAAAAGACTGACCTCTCCATTGGAGTATAATCTGCCTTCCAGCCT 3335
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 3336 GCTTGACTTTGAAAATGATTTAATTGAATCAAGCTGCAAAGTAACTAGCCCTACCACTTATGTCTTGGATGAAG 3409
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 3410 ATGAACCTCGATTCCTTGAAGAAGTTGATTACAGTGCAGAAAGTAATGATGAGTTAGATATTGAGTTGGCTGAA 3483
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 3484 AATGTAGGAGATTATGAACCTTCTGCTCAAGAAGAAGTACTTTCTGACTCTGAATTATCAAGAACATACCTACC 3557
Sbjct 2368 -------------------------------------------------------------------------- 2367
Query 3558 T 3558
Sbjct 2368 - 2367
