Nucleotide Global Alignment

Description

• Query: ccsbBroad304_02745
• Subject: XM_011518421.2
• Aligned Length: 3686
• Identities: 1960
• Gaps: 1708

Alignment

Query    1  ATGAGCAAGTTAAAAGTGATACCAGAAAAAAGCCTTACCAATAATTCTAGGATCGTAGGACTCCTGGCTCAACT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGAGCAAGTTAAAAGTGATACCAGAAAAAAGCCTTACCAATAATTCTAGGATCGTAGGACTCCTGGCTCAACT  74

Query   75  GGAGAAGATCAATGCTGAGCCTTCAGAATCAGACACTGCCCGATATGTTACATCAAAAATTCTTCATCTGGCTC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GGAGAAGATCAATGCTGAGCCTTCAGAATCAGACACTGCCCGATATGTTACATCAAAAATTCTTCATCTGGCTC  148

Query  149  AGAGTCAAGAAAAAACAAGGAGAGAAATGACAGCCAAAGGTTCTACAGGAATGGAAATTCTGCTGTCAACATTA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AGAGTCAAGAAAAAACAAGGAGAGAAATGACAGCCAAAGGTTCTACAGGAATGGAAATTCTGCTGTCAACATTA  222

Query  223  GAGAACACAAAAGATCTTCAAACTACACTTAATATCTTAAGCATTCTTGTTGAGCTGGTGTCAGCTGGTGGAGG  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GAGAACACAAAAGATCTTCAAACTACACTTAATATCTTAAGCATTCTTGTTGAGCTGGTGTCAGCTGGTGGAGG  296

Query  297  TCGAAGAGTGAGTTTCTTAGTCACCAAAGGTGGTTCACAAATATTGTTGCAGTTACTTATGAATGCCAGCAAAG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TCGAAGAGTGAGTTTCTTAGTCACCAAAGGTGGTTCACAAATATTGTTGCAGTTACTTATGAATGCCAGCAAAG  370

Query  371  AATCTCCCCCACATGAGGACTTAATGGTACAGATTCATTCTATTCTTGCAAAGATTGGACCAAAAGATAAAAAA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AATCTCCCCCACATGAGGACTTAATGGTACAGATTCATTCTATTCTTGCAAAGATTGGACCAAAAGATAAAAAA  444

Query  445  TTTGGAGTAAAGGCTAGAATTAATGGGGCTCTGAATATAACCCTGAATTTGGTCAAGCAGAATTTGCAGAATCA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TTTGGAGTAAAGGCTAGAATTAATGGGGCTCTGAATATAACCCTGAATTTGGTCAAGCAGAATTTGCAGAATCA  518

Query  519  TCGCTTGGTTCTACCTTGCCTTCAGCTTTTACGAGTATATTCTGCCAACTCTGTGAATTCAGTATCCTTAGGGA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCGCTTGGTTCTACCTTGCCTTCAGCTTTTACGAGTATATTCTGCCAACTCTGTGAATTCAGTATCCTTAGGGA  592

Query  593  AAAATGGAGTTGTGGAACTGATGTTTAAAATCATTGGACCATTTAGTAAGAAGAATTCCAGTCTTATAAAGGTT  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AAAATGGAGTTGTGGAACTGATGTTTAAAATCATTGGACCATTTAGTAAGAAGAATTCCAGTCTTATAAAGGTT  666

Query  667  GCTTTAGACACTCTTGCTGCATTGCTAAAATCAAAAACAAATGCCAGGAGAGCTGTAGACAGAGGATATGTCCA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GCTTTAGACACTCTTGCTGCATTGCTAAAATCAAAAACAAATGCCAGGAGAGCTGTAGACAGAGGATATGTCCA  740

Query  741  AGTGCTTTTAACAATTTATGTAGATTGGCACCGCCATGATAACCGGCATAGAAACATGCTCATTCGGAAAGGAA  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGTGCTTTTAACAATTTATGTAGATTGGCACCGCCATGATAACCGGCATAGAAACATGCTCATTCGGAAAGGAA  814

Query  815  TTTTACAGAGTTTAAAAAGTGTTACAAACATCAAGTTGGGAAGAAAAGCATTTATTGATGCCAATGGGATGAAA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TTTTACAGAGTTTAAAAAGTGTTACAAACATCAAGTTGGGAAGAAAAGCATTTATTGATGCCAATGGGATGAAA  888

Query  889  ATTCTGTATAATACTTCGCAA-----------------------------------------------------  909
            |||||||||||||||||||||                                                     
Sbjct  889  ATTCTGTATAATACTTCGCAAGAATGTCTGGCAGTCAGGACTCTGGATCCTCTTGTCAATACCTCCAGTCTGAT  962

Query  910  -------------------------------------------------------------------TTGCCTG  916
                                                                               |||||||
Sbjct  963  AATGAGGAAGTGTTTCCCAAAAAATCGACTGCCACTCCCAACAATTAAAAGTTCTTTTCATTTCCAGTTGCCTG  1036

Query  917  TTATTCCTGTGACTGGTCCTGTGGCTCAGCTCTACAGCTTACCTCCTGAAGTGGATGACGTAGTAGATGAAAGT  990
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TTATTCCTGTGACTGGTCCTGTGGCTCAGCTCTACAGCTTACCTCCTGAAGTGGATGACGTAGTAGATGAAAGT  1110

Query  991  GATGACAACGATGATATTGATGTAGAAGCTGAAAACGAAACTGAGAATGAAGATGACCTAGATCAAAATTTTAA  1064
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GATGACAACGATGATATTGATGTAGAAGCTGAAAACGAAACTGAGAATGAAGATGACCTAGATCAAAATTTTAA  1184

Query 1065  GAATGATGATATTGAAACAGATATTAACAAACTAAAACCCCAGCAAGAACCGGGACGAACAATAGAAGATCTAA  1138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GAATGATGATATTGAAACAGATATTAACAAACTAAAACCCCAGCAAGAACCGGGACGAACAATAGAAGATCTAA  1258

Query 1139  AAATGTATGAACACCTTTTCCCTGAGCTTGTTGATGATTTTCAGGACTATGATTTAATCTCCAAAGAACCAAAG  1212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  AAATGTATGAACACCTTTTCCCTGAGCTTGTTGATGATTTTCAGGACTATGATTTAATCTCCAAAGAACCAAAG  1332

Query 1213  CCTTTTGTATTTGAGGGAAAAGTACGTGGTCCTATTGTTGTTCCTACGGCAGGCGAGGAAACATCTGGGAATTC  1286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CCTTTTGTATTTGAGGGAAAAGTACGTGGTCCTATTGTTGTTCCTACGGCAGGCGAGGAAACATCTGGGAATTC  1406

Query 1287  TGGCAATTTAAGAAAAGTTGTAATGAAGGAGAACATATCTTCTAAAGGAGATGAAGGTGAAAAGAAGTCTACCT  1360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TGGCAATTTAAGAAAAGTTGTAATGAAGGAGAACATATCTTCTAAAGGAGATGAAGGTGAAAAGAAGTCTACCT  1480

Query 1361  TTATGGATCTAGCAAAAGAAGATATTAAAGATAATGATAGAACATTACAACAGCAGCCAGGTGATCAAAATAGA  1434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TTATGGATCTAGCAAAAGAAGATATTAAAGATAATGATAGAACATTACAACAGCAGCCAGGTGATCAAAATAGA  1554

Query 1435  ACTATTTCATCAGTCCATGGTTTAAACAATGATATTGTAAAGGCCTTGGACCGAATTACATTGCAGAATATTCC  1508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  ACTATTTCATCAGTCCATGGTTTAAACAATGATATTGTAAAGGCCTTGGACCGAATTACATTGCAGAATATTCC  1628

Query 1509  TTCTCAAACAGCCCCAGGTTTTACTGCAGAAATGAAGAAGGACTGCAGTCTTCCTCTTACTGTCCTTACCTGTG  1582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TTCTCAAACAGCCCCAGGTTTTACTGCAGAAATGAAGAAGGACTGCAGTCTTCCTCTTACTGTCCTTACCTGTG  1702

Query 1583  CTAAAGCATGTCCACACATGGCTACTTGTGGAAATGTTCTGTTTGAGGGAAGAACAGTTCAGCTAGGGAAGCTT  1656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CTAAAGCATGTCCACACATGGCTACTTGTGGAAATGTTCTGTTTGAGGGAAGAACAGTTCAGCTAGGGAAGCTT  1776

Query 1657  TGCTGCACTGGAGTTGAAACTGAAGATGATGAAGATACTGAGTCAAATTCATCGGTAGAACAAGCATCGGTTGA  1730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TGCTGCACTGGAGTTGAAACTGAAGATGATGAAGATACTGAGTCAAATTCATCGGTAGAACAAGCATCGGTTGA  1850

Query 1731  AGTACCTGATGGACCAACACTCCATGACCCAGACCTCTATATTGAGATTGTGAAAAATACGAAGTCTGTCCCAG  1804
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  AGTACCTGATGGACCAACACTCCATGACCCAGACCTCTATATTGAGATTGTGAAAAATACGAAGTCTGTCCCAG  1924

Query 1805  AATATTCAGAGGTGGCTTATCCCGATTATTTTGGTCACATTCCGCCTCCATTCAAAGAGCCTATTTTAGAAAGG  1878
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AATATTCAGAGGTGGCTTATCCCGATTATTTTGGTCACATTCCGCCTCCATTCAAAGAGCCTATTTTAGAAAGG  1998

Query 1879  CCTTATGGTGTACAAAGGACAAAAATTG-----CTCAAGATATTGAAAGGCTAATACATCAGAGTGATATCATA  1947
            ||||||||||||||||||        ||     ||                   |.|.||       ||.|.| 
Sbjct 1999  CCTTATGGTGTACAAAGG--------TGTTTCCCT-------------------TCCCTC-------TACCTT-  2037

Query 1948  GATCGTGTGGTATATGACTTGGATAACCCAAATTACACCATTCCAGAAGAG-GGAGATATTTTGAAATTTAACT  2020
              ||             |||            |..|||||   ||.||||| |||||.|||           ||
Sbjct 2038  --TC-------------CTT------------TCCCACCA---CAAAAGAGAGGAGAGATT-----------CT  2070

Query 2021  CCAAATTTG-AGTCTGGGAATCTGCGCAAAGTAATT-CAAATTAGAAAAAATGAATATGATCTTATTCTGAACT  2092
            .|.||..|| ||.|||    .||||      .|||| ||..||||.                            
Sbjct 2071  ACGAACATGCAGACTG----ACTGC------CAATTGCATTTTAGC----------------------------  2106

Query 2093  CAGACATAAACAGCAATCATTATCATCAGTGGTTTTACTTTGAAGTCAGTGGAATGCGACCAGGTGTTGCTTAC  2166
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 2167  AGGTTTAACATCATTAACTGTGAAAAGTCCAACAGTCAGTTTAATTATGGTATGCAACCACTCATGTATTCGGT  2240
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 2241  TCAGGAAGCATTAAATGCCAGACCATGGTGGATTCGTATGGGGACTGACATTTGTTACTATAAAAATCATTTCT  2314
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 2315  CAAGAAGTTCAGTTGCTGCAGGTGGGCAAAAGGGAAAATCCTACTATACAATTACATTTACTGTCAATTTTCCA  2388
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 2389  CATAAAGATGATGTTTGCTACTTTGCTTATCACTATCCATATACGTATTCAACTTTACAGATGCATCTTCAAAA  2462
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 2463  ATTGGAATCAGCACACAATCCTCAGCAAATCTATTTTCGGAAAGATGTGTTATGTGAAACCCTGTCTGGAAACA  2536
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 2537  GCTGCCCCTTGGTGACTATAACAGCAATGCCAGAGTCTAATTATTATGAACATATCTGCCATTTCAGAAATCGC  2610
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 2611  CCTTACGTTTTCTTGTCTGCTCGGGTACATCCTGGAGAAACTAATGCAAGTTGGGTTATGAAAGGAACGTTGGA  2684
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 2685  ATATCTCATGAGCAATAACCCCACTGCTCAGAGCTTACGAGAATCTTATATTTTTAAAATTGTCCCTATGTTAA  2758
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 2759  ATCCAGATGGTGTCATCAATGGAAATCATCGCTGTTCTTTAAGTGGAGAGGATTTGAATAGGCAGTGGCAAAGT  2832
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 2833  CCAAGTCCGGATTTACATCCTACAATTTACCATGCTAAGGGGCTGTTGCAATACTTGGCTGCAGTGAAGCGTTT  2906
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 2907  ACCCTTGGTTTATTGTGATTATCATGGCCATTCCCGAAAGAAGAATGTATTTATGTATGGTTGCAGCATCAAAG  2980
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 2981  AGACAGTGTGGCATACCAATGATAATGCAACTTCATGTGATGTTGTGGAGGATACGGGATACAGGACATTGCCT  3054
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 3055  AAGATACTGAGCCATATCGCCCCAGCATTTTGCATGAGCAGCTGTAGCTTCGTAGTGGAAAAATCTAAAGAATC  3128
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 3129  CACAGCACGTGTTGTAGTTTGGAGGGAAATAGGAGTACAAAGAAGTTATACCATGGAGAGTACTTTATGTGGCT  3202
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 3203  GTGATCAGGGAAAATACAAGGGTTTACAGATTGGTACCCGAGAACTGGAAGAGATGGGAGCAAAATTTTGTGTT  3276
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 3277  GGTCTTTTACGTTTGAAAAGACTGACCTCTCCATTGGAGTATAATCTGCCTTCCAGCCTGCTTGACTTTGAAAA  3350
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 3351  TGATTTAATTGAATCAAGCTGCAAAGTAACTAGCCCTACCACTTATGTCTTGGATGAAGATGAACCTCGATTCC  3424
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 3425  TTGAAGAAGTTGATTACAGTGCAGAAAGTAATGATGAGTTAGATATTGAGTTGGCTGAAAATGTAGGAGATTAT  3498
                                                                                      
Sbjct 2107  --------------------------------------------------------------------------  2106

Query 3499  GAACCTTCTGCTCAAGAAGAAGTACTTTCTGACTCTGAATTATCAAGAACATACCTACCT  3558
                                                                        
Sbjct 2107  ------------------------------------------------------------  2106