Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02765
- Subject:
- XR_001751185.1
- Aligned Length:
- 3520
- Identities:
- 1851
- Gaps:
- 1669
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAAAACAGGAAGTGCCTACGGAGGCCGGGCCGGCAGCGGCGGCCGGGCATGAAGCCGGGCGGCTACGGGATCG 74
Query 1 ---------------------------------ATGAGCGACATAGTGGAGAAGACGCTGACGGCGCTGCCGGG 41
|||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CGGGCGGCGGCGGCATCGCGGGCGGCGGCGGCGATGAGCGACATAGTGGAGAAGACGCTGACGGCGCTGCCGGG 148
Query 42 ACTCTTTCTGCAGAACCAGCCCGGTGGTGGGCCCGCGGCCGCCAAGGCGTCCTTCTCCTCGAGGCTGGGCAGCC 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ACTCTTTCTGCAGAACCAGCCCGGTGGTGGGCCCGCGGCCGCCAAGGCGTCCTTCTCCTCGAGGCTGGGCAGCC 222
Query 116 TTGTCCGCGGCATCACAGCCCTCACCTCCAAGCACGAAGAAGAAAAATTAATCCAGCAGGAACTGAGTAGTCTG 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TTGTCCGCGGCATCACAGCCCTCACCTCCAAGCACGAAGAAGAAAAATTAATCCAGCAGGAACTGAGTAGTCTG 296
Query 190 AAAGCGACTGTTTCTGCTCCTACTACAACACTGAAAATGATGAAGGAATGTATGGTGAGACTTATATATTGTGA 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AAAGCGACTGTTTCTGCTCCTACTACAACACTGAAAATGATGAAGGAATGTATGGTGAGACTTATATATTGTGA 370
Query 264 AATGCTTGGATATGATGCTTCCTTTGGCTATATTCATGCAATCAAGTTAGCCCAACAAGGAAACCTCTTAGAAA 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AATGCTTGGATATGATGCTTCCTTTGGCTATATTCATGCAATCAAGTTAGCCCAACAAGGAAACCTCTTAGAAA 444
Query 338 AAAGAGTAGGTTATTTGGCTGTTTCCTTATTTCTACATGAAAGTCATGAATTATTGCTTCTCCTTGTGAATACA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAAGAGTAGGTTATTTGGCTGTTTCCTTATTTCTACATGAAAGTCATGAATTATTGCTTCTCCTTGTGAATACA 518
Query 412 GTTGTAAAGGATCTGCAGAGCACTAACCTAGTAGAAGTGTGTATGGCACTGACTGTTGTTAGCCAGATTTTCCC 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GTTGTAAAGGATCTGCAGAGCACTAACCTAGTAGAAGTGTGTATGGCACTGACTGTTGTTAGCCAGATTTTCCC 592
Query 486 CTGCGAAATGATTCCAGCTGTTCTTCCATTAATAGAAGATAAACTTCAACATTCTAAGGAGATTGTACGAAGAA 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTGCGAAATGATTCCAGCTGTTCTTCCATTAATAGAAGATAAACTTCAACATTCTAAGGAGATTGTACGAAGAA 666
Query 560 AAGCTGTTCTGGCATTATACAAATTCCATCTCATTGCTCCTAATCAAGTACAACATATTCATATTAAGTTTCGG 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGCTGTTCTGGCATTATACAAATTCCATCTCATTGCTCCTAATCAAGTACAACATATTCATATTAAGTTTCGG 740
Query 634 AAAGCACTTTGTGACAGAGATGTTGGGGTCATGGCTGCCTCCTTGCATATATATCTTAGAATGATTAAGGAGAA 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAAGCACTTTGTGACAGAGATGTTGGGGTCATGGCTGCCTCCTTGCATATATATCTTAGAATGATTAAGGAGAA 814
Query 708 TTCATCTGGATATAAAGACTTGACTGGGAGTTTTGTAACCATTTTGAAGCAAGTAGTTGGAGGAAAGCTCCCAG 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TTCATCTGGATATAAAGACTTGACTGGGAGTTTTGTAACCATTTTGAAGCAAGTAGTTGGAGGAAAGCTCCCAG 888
Query 782 TAGAATTCAATTACCACAGTGTGCCAGCACCATGGTTACAAATTCAGCTCTTGAGAATACTGGGACTTCTAGGA 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TAGAATTCAATTACCACAGTGTGCCAGCACCATGGTTACAAATTCAGCTCTTGAGAATACTGGGACTTCTAGGA 962
Query 856 AAAGATGATCAAAGGACAAGTGAATTAATGTATGATGTTCTTGATGAATCCTTACGAAGAGCTGAGTTAAATCA 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAAGATGATCAAAGGACAAGTGAATTAATGTATGATGTTCTTGATGAATCCTTACGAAGAGCTGAGTTAAATCA 1036
Query 930 CAATGTCACATATGCTATTTTGTTTGAATGTGTGCATACAGTCTATTCTATTTATCCTAAATCGGAATTACTTG 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CAATGTCACATATGCTATTTTGTTTGAATGTGTGCATACAGTCTATTCTATTTATCCTAAATCGGAATTACTTG 1110
Query 1004 AGAAGGCTGCCAAGTGCATTGGAAAATTTGTTCTGTCACCTAAAATAAATCTAAAATATTTAGGACTGAAGGCT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGAAGGCTGCCAAGTGCATTGGAAAATTTGTTCTGTCACCTAAAATAAATCTAAAATATTTAGGACTGAAGGCT 1184
Query 1078 CTTACCTATGTTATCCAACAGGATCCTACTCTGGCTCTTCAACACCAGATGACAATAATTGAATGTTTAGATCA 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CTTACCTATGTTATCCAACAGGATCCTACTCTGGCTCTTCAACACCAGATGACAATAATTGAATGTTTAGATCA 1258
Query 1152 TCCTGATCCCATTATTAAAAGAGAGACTCTGGAACTTCTTTACAGAATTACTAATGCACAGAATATAACAGTTA 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCCTGATCCCATTATTAAAAGAGAGACTCTGGAACTTCTTTACAGAATTACTAATGCACAGAATATAACAGTTA 1332
Query 1226 TTGTCCAGAAAATGCTTGAATATTTACATCAGAGCAAAGAAGAGTATGTCATCGTCAATTTGGTCGGCAAAATA 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TTGTCCAGAAAATGCTTGAATATTTACATCAGAGCAAAGAAGAGTATGTCATCGTCAATTTGGTCGGCAAAATA 1406
Query 1300 GCAGAGCTGGCTGAGAA--ATATGCTCCTGATAATGCATGGTTTATTCAGACAATGAATGCTGTGTTTTCAGTA 1371
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GCAGAGCTGGCTGAGAAACATATGCTCCTGATAATGCATGGTTTATTCAGACAATGAATGCTGTGTTTTCAGTA 1480
Query 1372 GGAGGAGATGTAATGCATCCTGATATTCCCAATAACTTTCTGAGACTACTAGCGGAAGGTTTTGATGATGAAAC 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GGAGGAGATGTAATGCATCCTGATATTCCCAATAACTTTCTGAGACTACTAGCGGAAGGTTTTGATGATGAAAC 1554
Query 1446 AGAAGATCAGCAATTAAGACTCTATGCAGTTCAGTCTTATCTCACTTTACTGGATATGGAAAATGTGTTCTATC 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGAAGATCAGCAATTAAGACTCTATGCAGTTCAGTCTTATCTCACTTTACTGGATATGGAAAATGTGTTCTATC 1628
Query 1520 CACAGAGATTTCTTCAAGTTATGAGTTGGGTATTAGGGGAATATTCCTACCTCTTAGATAAGGAAACGCCAGAG 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CACAGAGATTTCTTCAAGTTATGAGTTGGGTATTAGGGGAATATTCCTACCTCTTAGATAAGGAAACGCCAGAG 1702
Query 1594 GAAGTTATAGCTAAGCTCTACAAGTTACTTATGAATGACTCTGTGTCTTCAGAAACAAAAGCCTGGTTAATTGC 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GAAGTTATAGCTAAGCTCTACAAGTTACTTATGAATGACTCTGTGTCTTCAGAAACAAAAGCCTGGTTAATTGC 1776
Query 1668 TGCTGTGACCAAATTGACATCTCAGGCGCACTCTTCTAATACAGTTGAGAGATTAATCCATGAATTTACCATAT 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TGCTGTGACCAAATTGACATCTCAGGCGCACTCTTCTAATACAGTTGAGAGATTAATCCATGAATTTACCATAT 1850
Query 1742 CTTTGGATACTTGTATGAGACAACATGCATTTGAATTAAAACATTTGCATGAGAATGTGGAACTTATGAAGAGC 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 CTTTGGATACTTGTATGAGACAACATGCATTTGAATTAAAACATTTGCATGAGAATGTGGAACTTATGAAGAGC 1924
Query 1816 TTGCTTCCAGTTGACAGGAGTTGTGAAGACTTGGTGGTAGATGCTTCTTTATCTTTTCTGGATGGTTTTGTGGC 1889
||||||||||||||||||||||||||||||||||||
Sbjct 1925 TTGCTTCCAGTTGACAGGAGTTGTGAAGACTTGGTG-------------------------------------- 1960
Query 1890 TGAAGGACTCAGTCAGGGTGCAGCGCCTTACAAACCTCCCCATCAACGCCAGGAGGAAAAGCTTTCTCAGGAAA 1963
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 1964 AAGTTCTCAATTTTGAACCATATGGACTCTCCTTTTCTTCATCTGGCTTCACTGGACGACAGTCTCCTGCTGGC 2037
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 2038 ATTTCTCTTGGTTCAGATGTATCTGGGAATAGTGCTGAGACAGGACTGAAAGAGACAAATAGCTTGAAGCTGGA 2111
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 2112 AGGTATAAAGAAATTGTGGGGGAAAGAAGGCTATCTTCCCAAGAAGGAAAGCAAAACTGGTGATGAAAGTGGAG 2185
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 2186 CTCTGCCTGTTCCTCAAGAGAGTATAATGGAGAATGTAGATCAAGCTATAACTAAAAAGGATCAATCTCAAGTT 2259
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 2260 CTTACCCAATCTAAAGAGGAGAAAGAAAAGCAGCTGCTGGCATCATCATTATTTGTTGGTCTAGGATCAGAAAG 2333
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 2334 TACAATCAACCTGCTGGGAAAAGCAGATACTGTCTCTCACAAGTTCAGAAGGAAATCAAAAGTCAAAGAAGCTA 2407
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 2408 AAAGTGGCGAAACAACCAGTACTCATAATATGACCTGTTCTTCCTTTAGTTCTTTGTCAAATGTGGCATATGAA 2481
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 2482 GATGATTATTATTCGAATACTTTGCACGATACAGGAGACAAGGAATTAAAGAAATTTTCTCTCACTTCAGAACT 2555
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 2556 TTTGGATTCTGAGTCACTCACAGAACTGCCCTTGGTTGAGAAATTCTCATATTGTAGTCTGTCTACACCTTCAT 2629
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 2630 TGTTTGCTAATAACAACATGGAAATTTTTCACCCTCCTCAATCTACTGCAGCCTCAGTTGCCAAGGAAAGCTCT 2703
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 2704 TTAGCTTCATCTTTTTTGGAAGAAACTACTGAATACATACACTCAAATGCTATGGAAGTCTGTAATAATGAAAC 2777
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 2778 TATATCAGTGTCTTCTTATAAAATTTGGAAAGATGATTGTTTATTGATGGTCTGGTCAGTCACTAATAAGAGTG 2851
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 2852 GTTTGGAATTGAAAAGTGCTGACTTAGAAATTTTTCCTGCAGAAAATTTCAAGGTGACTGAGCAACCTGGATGC 2925
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 2926 TGTTTGCCTGTAATGGAAGCAGAAAGCACCAAAAGCTTTCAATATAGTGTGCAGATAGAAAAACCTTTTACAGA 2999
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 3000 AGGAAATCTTACTGGTTTTATTAGTTATCATATGATGGATACTCATTCTGCTCAGCTGGAATTTTCTGTAAACT 3073
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 3074 TATCACTATTAGATTTCATTAGACCATTAAAAATCTCAAGTGACGACTTTGGGAAACTCTGGTTATCCTTCGCA 3147
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 3148 AATGATGTGAAACAAAATGTAAAAATGTCAGAATCTCAAGCTGCACTTCCTTCTGCACTAAAGACTCTGCAACA 3221
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 3222 GAAACTAAGACTCCATATTATTGAGATTATAGGCAATGAAGGGCTATTGGCCTGTCAGCTGCTCCCATCCATCC 3295
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 3296 CCTGCTTACTGCATTGCCGAGTTCATGCAGATGTATTAGCCCTGTGGTTCAGATCCTCCTGTTCTACTCTTCCT 3369
Sbjct 1961 -------------------------------------------------------------------------- 1960
Query 3370 GACTATTTACTGTATCAGTGTCAAAAGGTGATGGAGGGATCC 3411
Sbjct 1961 ------------------------------------------ 1960
