Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02816
- Subject:
- NR_135911.2
- Aligned Length:
- 4059
- Identities:
- 1097
- Gaps:
- 2921
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTCATTCGAGGTCCGGGTCCGGCTTGCGGGGTCAGCGAACTGGAGAGGCGCCATGGGCTGGAGTAAGCCCCCCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCACCTTCCGTCCTCGATCGTTCCCCTTGTGGAAGTAGTCCCGGGTCTCGTGGGATCCTCGCCGCCCGCTCCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCTGCGCTGTCGGTTCCCCCGCGCCTGGGCGGACCCTAACCCCACCCGGCCCTCCGCACCGCAGCCCCGGCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CACCAGGTCCTCTGCAGACTGGCCGGACAGCCTGGCCTTTTCCAGCTCAGGTTCCTAATCTGTAAAATGGGCGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGCCGTGGGAAGGGGAGGAAGAGGCAGAAAGGCACTGGACTCCAGGAAAGGGGTCGGGGAACGTGCAGGGGTTT 370
Query 1 ----------------------------------------------------ATGGGCTGGATCACAG-----A 17
.|||||..| ||||.| |
Sbjct 371 TGGCGCCAGACACACCACGTTCCGGCCAAGTGGCTCCTTACTGGCTGTGAACGTGGGCCAG-TCACTGTCTCCA 443
Query 18 AG-----ATCTT-------ATTAGACGGAATGC--TGAACACAA--------------CGACTGTG-------- 55
|| ||||| ||| .|||||.|| ||.|..|.| |||||.||
Sbjct 444 AGCCGCAATCTTCGGACTCATT--CCGGAAGGCAGTGTAGCCTAATGGTGGAGGGTTCCGACTCTGGAGCCAGG 515
Query 56 ----------TCATTTTTTCCCTG-----------GAGGAACT---CTCGTT--GCATCAGC------------ 91
||..|.|| |||| |||..||| |.|.|| ||.|||||
Sbjct 516 GTTGAAGTCCTCCCTCTT--CCTGTGACTTTGAGCGAGTGACTTCACCCCTTGGGCCTCAGCTTCTTCATCTCC 587
Query 92 -AAGAAATAGAA---AGAC--------TAGAACACA-------TTGATAAATGGTGCCGGGATTT--------- 137
||..|||.|.| |.|| ||| ||||| || ||||| ||.|.|||
Sbjct 588 AAAATAATGGCAATCATACTACTGTTTTAG-ACACAGTAAGTGTT-ATAAA------CGTGTTTTTGTTTGTTT 653
Query 138 ---------AAAAATT---CTCTATC------------------------------------------------ 151
||.|.|| ||||.||
Sbjct 654 GTTTGAGACAAGAGTTTTGCTCTGTCGCCCAGGCTGGAGTGCAGCGGCGCGATCTCGGCCCACTGCAGCCTCCG 727
Query 152 ---------TTCAA--AATAATCTTAT--------------------TGGGA---------------------- 172
||||| ||| |||..| |||||
Sbjct 728 CCTCCCGGGTTCAAGCAAT--TCTCCTGCCTCAGCCACCTGAGTAGCTGGGATTACAGCGTGCACCACCACGCC 799
Query 173 ----AAATT---------------GAAA------------ATGTTAG------------CAAACTC-------- 195
.|||| ||.| |||||.| |.|||||
Sbjct 800 AGGCTAATTTTTGTATTCTTAGTAGAGACGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTC 873
Query 196 ---------------------------AAG--------------------------------------AAACTT 204
||| ||||.|
Sbjct 874 AGGTGATCCGCCCGCCTCGGCCTCTCAAAGTGCTGCGATTACAGGCGTGAGCCACTGCGCCCGGTAGTAAACGT 947
Query 205 GAATATTTGAATTTAGCTTTAAACAACATTGAA-AAAATAGAAAACTTGGAA---------GGATGTGAAGAGC 268
| ||| |||||| ||| |.|.||..|||| ||.|| |||||||||||||
Sbjct 948 G----TTT--------CTTTAA--------GAATATACTAACAAAC-TGCAAGGTGATGCGGGATGTGAAGAGC 1000
Query 269 TGGCAAAACTTGACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACAATATCCAT 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TGGCAAAACTTGACCTGACTGTGAATTTCATTGGAGAGCTGAGCAGCATTAAAAACTTGCAGCACAATATCCAT 1074
Query 343 CTGAAGGAGCTCTTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTAGCAACTCT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTGAAGGAGCTCTTTCTCATGGGGAACCCATGTGCTTCCTTTGACCACTATAGGGAGTTCGTGGTAGCAACTCT 1148
Query 417 TCCACAATTAAAGTGGTTGGATGGTAAAGAAATAGAGCCTTCAGAAAGGATTAAGGCATTGCAGGACTATTCAG 490
|||||||||||||
Sbjct 1149 TCCACAATTAAAG------------------------------------------------------------- 1161
Query 491 TAATTGAACCACAAATCAGAGAGCAGGAAAAAGATCACTGTCTTAAACGAGCCAAACTCAAGGAAGAGGCTCAG 564
Sbjct 1162 -------------------------------------------------------------------------- 1161
Query 565 AGGAAACACCAAGAAGAGGATAAAAATGAAGACAAGAGAAGTAACGCAGGCTTTGATGGACGTTGGTACACAGA 638
Sbjct 1162 -------------------------------------------------------------------------- 1161
Query 639 CATCAATGCTACTCTTTCCTCTTTAGAGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACAACACAA 712
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 ---------------TTCCTCTTTAGAGAGCAAAGACCACCTACAGGCACCAGACACAGAGGAACACAACACAA 1220
Query 713 AGAAATTAGACAACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCAAGATTG 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 AGAAATTAGACAACAGTGAAGATGACTTGGAATTCTGGAATAAGCCCTGTTTGTTTACTCCTGAATCAAGATTG 1294
Query 787 GAAACTCTTAGACACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGTGAAACC 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 GAAACTCTTAGACACATGGAAAAACAACGGAAGAAACAGGAAAAATTAAGTGAAAAAAAGAAGAAAGTGAAACC 1368
Query 861 ACCCAGGACTTTGATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTTTGAAAG 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 ACCCAGGACTTTGATCACTGAAGATGGGAAAGCCCTAAATGTGAATGAGCCCAAAATTGACTTCTCTTTGAAAG 1442
Query 935 ATAACGAAAAGCAGATCATCCTGGACCTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTTGATGTG 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 ATAACGAAAAGCAGATCATCCTGGACCTTGCTGTCTATAGGTATATGGATACCTCTTTAATCGATGTTGATGTG 1516
Query 1009 CAACCAACTTACGTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAAACCCGA 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 CAACCAACTTACGTGCGAGTAATGATCAAAGGAAAGCCATTTCAGCTTGTCCTTCCTGCAGAAGTGAAACCCGA 1590
Query 1083 TAGTAGTTCTGCTAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAGTAATCA 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 TAGTAGTTCTGCTAAAAGATCTCAGACAACGGGTCATTTGGTCATCTGCATGCCCAAGGTAGGAGAAGTAATCA 1664
Query 1157 CAGGTGGTCAGCGAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACAAGAAGC 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 CAGGTGGTCAGCGAGCATTCAAATCTATGAAAACTACCTCGGACAGGAGCAGAGAACAAACAAATACAAGAAGC 1738
Query 1231 AAGCACATGGAGAAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCAAGAGAA 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 AAGCACATGGAGAAACTAGAAGTAGACCCTAGCAAGCACTCATTCCCTGATGTGACTAACATAGTTCAAGAGAA 1812
Query 1305 AAAACACACACCCAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAGACAACC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 AAAACACACACCCAGAAGACGACCTGAACCCAAAATTATACCAAGTGAGGAAGACCCAACCTTTGAAGACAACC 1886
Query 1379 CTGAAGTGCCTCCGCTGATT------------------------------------------------------ 1398
||||||||||||||||||||
Sbjct 1887 CTGAAGTGCCTCCGCTGATTTGAAACATCTGGCTGCGTTGCCATTGGCTGAGACCCACCAGGTCCAGTTTTGGT 1960
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 1961 TGGTGTAGAGACCATATGCATATTATTCCTGGGATAAACACAGAGTTATTTGTCAATATCGCTGCTCCAGTGTT 2034
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2035 TTAACTCTTACTTTGCATAGTAATATCCTTAAGATAGCTTAAAATTAAAATGTATGTCTTAAATGCTATAACTC 2108
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2109 ATCATTTACCTATAATAAAGGGTTGGTATTGAAAATGTTTAGTAAGATCATAGAACTATTGCATAAAACACTGA 2182
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2183 TTATAAATACTGTCTACTTATGCAAAGTATTAATTCATAGATAAAAGGACTGAGTATTAAATTGGTACTTCAGC 2256
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2257 AAAGTGGTCAAGCTTAGAAGTTAAAACTGTAATTTCAGACCCAATTGGAATACTTTAATATGATTTTAAACAGC 2330
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2331 ATTTCCATTTTCCTTCCCATGATGTGTCTGCTTTCTCTGGTGGCATGGTATAATGGCAAGAATATGAGTTTTGA 2404
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2405 AACCAGACACTCTATATTTGGATTCCAGCTCAATCACTTTGTAAAGACCTTCAGCAAGTCCTTTAATTCTCTGA 2478
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2479 GCCTTAGTGGCTTCATGTATAATCTGGGAATAATAACACTTGCCTCACAGGTTTGTCTCAAGATAAACTGCAGA 2552
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2553 AAGCACTTAGTACAGTGTCAGCCATACATTTAGAGCCTCTTCTCTCTCTCCTTCTTCCCTTTCTCCTCTCTCTT 2626
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2627 CTCCTCCCTTTCTCCTGTCTCTCCTCCTCCCTGCTCCTTCTTCCCCTCCCTCCCCAATTACTTTTCTCCCCTTA 2700
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2701 TTCTTTTTCTTCACCTTTTTACTCCCCATCCCACTCCTTCTCCTCTATTTCCTTCTTTACTTTTTTAATATCCT 2774
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2775 ACCTCTTCTTTATCTAGAACATTATGAATTCAATATTTCACATACATTGTAGGACAAATTACTGTTACTCTGAT 2848
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2849 CATGATATAGCAACATTTAAGTCAGTTTCCCCAAATATTCATTCAACAAATACTTATTGAGCAACTATTGAGTG 2922
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2923 CTAGCCCCCTCTCTGTTCATCAGGGATTTAGTAGTAACAAAGCAGACAAATACATACACACAGACTATGTCAGG 2996
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 2997 TGGTGTTCAGAGCTGTGAAGGAGAGTCAGAGTGAGGGAATCAAGGGTGATGGGTGCTTTTTCAGACAGGGCCTT 3070
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3071 TCTCTATTAAACAGGCTTCCAGTGGAAGACTCTGCTAATGTTTAGCAGATAACCAAAATGCATCAGTTAGAAAA 3144
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3145 AAATATGATGAGAATGAGGGACTGGTTATAGGAATGCAATTGGGCACAAATGTGGGAAGAGCTGGGTAGTGAAG 3218
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3219 CTCTAGAAGGGAGAGGTAGAGAATTGGAAGAAGAAGCACTGGTACAGGTAGACAATTCAGAACTTGCACAGAAT 3292
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3293 CTGAGAAGCTGAAGTAGGACTGTGATTGGGAGCTTGTGGAGAGGTCTATGGAAATTATCATGCTGCTGAAATTG 3366
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3367 TTGCCTCTATTTATCTGCTACCCTTCTGGTCCGTGGCCAAGATCCTGGTGGGTGGGCTTGGAGCCAGCCTTCGT 3440
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3441 CAGCAGGCCTGCGGTAAGAAAGATGGGATGGACACACAGTGGTGGAGATCAAGGATCAGCTGCAGCAGGCTGGG 3514
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3515 TCCCTCTGCATCTGTCCATCACTGCGACTGATGGCAATGACTGAGTATAACACCTTTCTTCATGGTCAACTCTA 3588
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3589 CCCAGGAACCACGTAGGGAAGGAAATTCTGGAAAACAGCTCCCAGCCTTAGCCAACTTGACATATCATAATCCA 3662
Query 1399 -------------------------------------------------------------------------- 1398
Sbjct 3663 ACAGAACTCAACCTCTACCAACTTGGAAATCATGTACATTTGTCAGGACTGTATTTAATTTCCACATAGAGAGA 3736
Query 1399 --------------------------------------------------------------- 1398
Sbjct 3737 AAGCAAAATTATACTTTTGACCAAACTAATAGAATTATCCATTAAACAAACAAAACTGTGCCA 3799
