Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02839
- Subject:
- XR_002958679.1
- Aligned Length:
- 6378
- Identities:
- 793
- Gaps:
- 5575
Alignment
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 1 AGGCGCTGTGAGAGGCGGTAGCGGCGGCGGCGGCGGTGGTATCGGCGGCAGCTGTGAGGGGGTTCCGGGAAGAT 74
Query 3 GGTGCTGATCAAGGAATTCCGTGTGGTTTTGCCATGTTCTGTTCAGGAGTATCAGGTTGGGCAGCTTTACTCTG 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GGTGCTGATCAAGGAATTCCGTGTGGTTTTGCCATGTTCTGTTCAGGAGTATCAGGTTGGGCAGCTTTACTCTG 148
Query 77 TTGCAGAAGCTAGTAAGAATGAGACTGGTGGTGGAGAAGGAATTGAAGTCTTAAAGAATGAACCTTATGAGAAG 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TTGCAGAAGCTAGTAAGAATGAGACTGGTGGTGGAGAAGGAATTGAAGTCTTAAAGAATGAACCTTATGAGAAG 222
Query 151 GATGGAGAAAAGGGACAGTATACGCACAAAATTTATCACCTAAAGAGCAAAGTGCCTGCATTCGTGAGGATGAT 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GATGGAGAAAAGGGACAGTATACGCACAAAATTTATCACCTAAAGAGCAAAGTGCCTGCATTCGTGAGGATGAT 296
Query 225 TGCTCCCGAGGGCTCCTTGGTGTTTCATGAGAAAGCCTGGAATGCGTACCCCTACTGTAGAACAATTGTAACGA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGCTCCCGAGGGCTCCTTGGTGTTTCATGAGAAAGCCTGGAATGCGTACCCCTACTGTAGAACAATTGTAACGA 370
Query 299 ATGAATATATGAAAGATGATTTCTTCATTAAAATCGAAACATGGCACAAACCAGACTTGGGAACATTAGAAAAT 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ATGAATATATGAAAGATGATTTCTTCATTAAAATCGAAACATGGCACAAACCAGACTTGGGAACATTAGAAAAT 444
Query 373 GTACATGGTTTAGATCCAAACACATGGAAAACTGTTGAAATTGTCCATATAGATATTGCAGATAGAAGTCAAGT 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTACATGGTTTAGATCCAAACACATGGAAAACTGTTGAAATTGTCCATATAGATATTGCAGATAGAAGTCAAGT 518
Query 447 TGAACCAGCAGACTACAAAGCTGATGAAGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGAACCAGCAGACTACAAAGCTGATGAAGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGG 592
Query 521 GACCCAACTGGAAGAAGGAGCTGGCAAACAGCCCTGACTGTCCCCAGATGTGTGCCTATAAGCTGGTGACCATC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GACCCAACTGGAAGAAGGAGCTGGCAAACAGCCCTGACTGTCCCCAGATGTGTGCCTATAAGCTGGTGACCATC 666
Query 595 AAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCAAAAGCAAGAAAAACGGATATTTACAAA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTCAAAAGCAAGAAAAACGGATATTTACAAA 740
Query 669 CTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAGGAGAATGGAAG 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTTCCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATCGATCTCACGATGGAAGACATTAGGAGAATGGAAG 814
Query 743 ACGAGACTCAGAAAGAACTAGAAACAATGCGTAAGAGGGGTTCCGTTCGA-GGCACGTCGGCTGCTGATGTC-- 813
|||||||||||||||||||||||||| ||||||..|| |.||||.| ||||..|| .||.||.|.
Sbjct 815 ACGAGACTCAGAAAGAACTAGAAACA----GTAAGACTGG--CTGTTCTATGGCAATTC----TCTAATTTTCC 878
Query 814 -------------------------------------------------------------------------- 813
Sbjct 879 CTTTTCTAAAACTGTATACATGCTTGGTAAATACAGAGTTAGAATTAGGAAGAGTGTTGTTAAAAATCATTCCC 952
Query 814 -------------------------------------------------------------------------- 813
Sbjct 953 TATTCTACTTATTCTCATCAAAATGGAGTTTCTTAGACACTGCTATTCCTTCACATATTCTGATCTCTCTTTTG 1026
Query 814 -------------------------------------------------------------------------- 813
Sbjct 1027 TTGAGCATCTTGCGTGAAGGTAGACTAGAGTTTTCTCAGTCTAGAATTGGTTACCTGTTAAATATCTAATGGTT 1100
Query 814 -------------------------------------------------------------------------- 813
Sbjct 1101 CTGTATTCTTTCTTACACACTAGCTTTAGTTCTGTAGGCTGGTTCCTGGTTCACAGTCGTTTTAGACACTTTGT 1174
Query 814 -------------------------------------------------------------------------- 813
Sbjct 1175 CAGACTAAGTTGCTTTTGGCTCAGTTTGTATCACAGCAAGCTTAACAAATGTTAACATGATAAGTCCTAGTTCG 1248
Query 814 -------------------------------------------------------------------------- 813
Sbjct 1249 CTTTTTTTGTAGAAAAGGTAAGGCTAATGGTATTGTTACTAATTCTGGAAATGCCTCCTCTGCTTCCCCCAACT 1322
Query 814 -------------------------------------------------------------------------- 813
Sbjct 1323 GGCAGTGATCCTTATTTCTTCCTAAGCTTTGGGCAGATTCAGGTGATCCTTGGGCAGGAGGTCAGCATGCCACA 1396
Query 814 -------------------------------------------------------------------------- 813
Sbjct 1397 GTTCAGTGTTACAGCCCATCCCAGCTGCTCCCCACCACCAGTGGGCAGGGCCGGCAGCCAGTGGGTGTCTTCTC 1470
Query 814 -------------------------------------------------------------------------- 813
Sbjct 1471 TCTCCTCGGGATGGATTCTTCCCTGGCTTCCTCTTGCATGTGTCTGGTTTTGTTTTTGCCCTGGGCCATGCTTG 1544
Query 814 -------------------------------------------------------------------------- 813
Sbjct 1545 TCTTCAGTTGGCAGTAAGGCCCCATGGGTGAAACAAACCCAAGGAATGTCCAGGGCCTGCTAGTGGTTTCCATG 1618
Query 814 -------------------------------------------------------------------------- 813
Sbjct 1619 TGGTCATCTCGAGTCCTGCCAGCAGGTCCAGTTTTGGAAGCCCTGCAGGTGTGAGCGTTTGACAGACGCCTGCG 1692
Query 814 -------------------------------------------------------------------------- 813
Sbjct 1693 TGTGAGGCAGAAACTCCATTTAATCACAGGAGAATGGCAGCAAATCAGATTCTTTGGCACAAAAGGAAACCTAT 1766
Query 814 -------------------------------------------------------------------------- 813
Sbjct 1767 TTTTCTGGCACATAGCATCGTAAAGAATCTGTTTAAAATTGCTTACTTTTGGTGATTACAGCAGATCTGCTTCT 1840
Query 814 -------------------------------------------------------------------------- 813
Sbjct 1841 AATTAGTTTTATATAAACCTTCTGAGAGGACTAGGACATATTTTCTTTATAAGGCAATAAAATATTTTAACCTT 1914
Query 814 -------------------------------------------------------------------------- 813
Sbjct 1915 ATCTTATACATAAAGTAAACTATAGGCAGACTCCAACTTATGAATGGATTTTGTTCCAAAAAATTTTAAGTTGA 1988
Query 814 -------------------------------------------------------------------------- 813
Sbjct 1989 TTGTTTGAAATTTGGAACATATTTTCCCATAGAGACAATGTTATAAATTAGGGTTTGGTTTCTAGACTAGCCAG 2062
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2063 CATAATATGCCTCTTTGACCCCAATTTCTCATACTAATATTAGGACTCTGAGTTCTGGATATAGGGAATAGGGT 2136
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2137 GATGAGATGGCAAGAGTGGAAGATACCCCCCTCATTCCTTATTTTTAGTCTAGCCACAGGCAAAACACTTAAAT 2210
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2211 AGGCAAGAGCAGATCATGGGCACTTCCTACCTTTCTTTCTAGGCCTCTCTCCCACTTCTGTGTTCCCTTTTTCA 2284
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2285 AGAGTCAGGTGCCTTTCTCTGACTCTAACAAGCACCCCCCTGGCCCTCGCTACCCTATCCAGTTTTAGTCCCAT 2358
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2359 TTGCCTTGTCTGGTTTCACTCCCTCCAAGTGCCCAAGGCTTCAGGAATACCTGCCAGCTCTGCCTTTGGCTCTT 2432
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2433 CCAAGCAGCTGGTGGGTGTCCACTGAACATGAAACAGAAGCAGCAAGAGACACCCAAACACGCTAAGCCCATGA 2506
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2507 TGCAGCACTGGCATTTCCTACAAGGATTTACCAACAGCTCAAACCCTTGGGAAAGAGCCCTTCTCTCAGTTTTT 2580
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2581 AATTTTTATGCTGAAGAACTGTGTGTCACATGGGGAAGAGTAGTTACCATTGACCAGGTGATAAGCCCTATCTG 2654
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2655 GTTTGGACTCTAAACCCTACCTATCTCTGGACCCCTTGGACAGAACTTGACTGAGATTTCTTCCCCCAGGGAAG 2728
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2729 TGCTCTTGCTTCTCTAACAAGTCCTCAGCCTCACGATACCTGAACACAGAATGGTCCCAGCCTCAACACGCTGT 2802
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2803 GACCCTCCGCTGTGGAGCTGGTGACTCTTGCTCTCACCTATGGCAGTGGGCCTGCAGGTGCAGCTGCTGCTCCA 2876
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2877 TGCAGATCAGTTATTTGTGAGTTGGGAATTGCACTCGAGAAGAAGGTGTAAGATAGACAAGTAAAAGCCCAATT 2950
Query 814 -------------------------------------------------------------------------- 813
Sbjct 2951 CCTTAGTGTCACCATTCTTATACCCACATTGCTGAAACTGATTAACCCCCTCATAAAGCTGGTGGAAAATCTAT 3024
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3025 CATTGGTTCAGAGTGAGGGTACATAGCAGTTGCTTTGTCAAATATCTCAAAAACATTTTAAGACAAATTTCACC 3098
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3099 ATTAAGTGGTGCATCTTAACGTTGAATCCCATTTAAGTTATTTTGCTGTAGGTCATTGGGGAGTGCTTGGTTCC 3172
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3173 ACACACAGAATCAAGATGCTGCTGCTTTGAGTCCTAATGGTGGCTTTGTGAAAGCATCCTCAGAATCTGGGCAG 3246
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3247 CATCAAGCCTGCAGGCCAAGAATGCCTACCCAGAAAGCACCTGCCTCCTGAAGAGGCATCCCATTTTAGAGTCC 3320
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3321 TCTTCACACGCAGAAATTTCTTTTTCCTTGAGGTCCTGACCCCTGACACCTGATGATAGATTTTAATGACATTA 3394
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3395 TAATGCTCTTAATTCACAAATATTTTAAGAATTGGATTTCTTTCAAATGGGTTTTGGCCCTGGAGAGAACTAGC 3468
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3469 ATCTTGAGAGGTTAGGCACACGAGGAATGCCCCTGCCTATGATCTGCAGGGAACTGCCCTGGAGTTGAGGCTCA 3542
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3543 GCAGCTGAAGGAGGACTTTAGGTAAACATTTTACCTGTTTGTTCTTAACTGGCACCTCCGGTTCCGGGGTGGGG 3616
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3617 GTGAGGATGTGTTGAGTTTTAACGTATTTATTGCATTTGTTTGTTTTCTGTTCATTTCGTTTTTTGTTTTCTCA 3690
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3691 TTGAGTGGTGTCACTTGTCTGGAGGCTATTGTTATGAATGCCTGTCCTTTCTAATACATCTGTGTGCCCTTCAT 3764
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3765 GGTTTGCCATACATTGTTTCTGTGCTTGCCTTTTCTCCCTTTCATTCTCCCTCCTTGCCTTTTCTCCCTTTCAT 3838
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3839 TCTCCCTCCTTTCAGTAAACTTCCTTTAAAGGACTCCACTGAGAGACCCTGTTCTCAGAAGCAGCAAAGAGGTG 3912
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3913 TGGCCCACACCCTCATGGCTTGCTTGTCTGGCCTAGGGACTATGCAAATATGGACCAGACCCTTGGGGTATTTT 3986
Query 814 -------------------------------------------------------------------------- 813
Sbjct 3987 CTCACATTATATTGGCAAACAATTTGTTTACCCATTGGCTGTTTTTGATAATTTTTTATCAGTCTGCAGGCTTT 4060
Query 814 -------------------------------------------------------------------------- 813
Sbjct 4061 TGTTTTTTACAGTTAAGGATAGATAAACCTTTTTTGTGCTAAGAAAAGCCTTTTGCAAGAATGTCTTCAAACCA 4134
Query 814 -------------------------------------------------------------------------- 813
Sbjct 4135 AGGTTATTTGAGGGGCCACAGAACTTCATTCTTAATGTGGATATGGTTATGAACATCACTTCATAATCTCTTCT 4208
Query 814 -------------------------------------------------------------------------- 813
Sbjct 4209 AGATCTTTTTTCTCCCCTTGCTTACTAACCCCTATTTAGAGTCTGATTTCAGCAGCTCACAATTTTATTTTACG 4282
Query 814 -------------------------------------------------------------------------- 813
Sbjct 4283 TTTAGATGCGTAAGAGGGGTTCCGTTCGAGGCACGTCGGCTGCTGATGTCTAGATGAGTCCCCTGTAGGGTCAG 4356
Query 814 -------------------------------------------------------------------------- 813
Sbjct 4357 AGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGA 4430
Query 814 -------------------------------------------------------------------------- 813
Sbjct 4431 ATCTGACCAGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCACAGGTTC 4504
Query 814 -------------------------------------------------------------------------- 813
Sbjct 4505 TCAACCACGTGTGTATATATGTATGTGTGCATATGTCTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATC 4578
Query 814 -------------------------------------------------------------------------- 813
Sbjct 4579 CAGATACACACACTTGTGTATATATGTACATACAGACATACTGAAGGGATTAGTACAATTTCTCCAAAGTACTG 4652
Query 814 -------------------------------------------------------------------------- 813
Sbjct 4653 TACCTATCTTCAGCAAGAATGCAAAAGAAAATATTTTCAATATATATACCTGGAACAGATTTTAATAATTATCA 4726
Query 814 -------------------------------------------------------------------------- 813
Sbjct 4727 GAGTAATACCATTAATGGACAAATTGACTGCAATGTAATACTAGCTGGTATGTTTCATAAATGTCAAGCTGTGG 4800
Query 814 -------------------------------------------------------------------------- 813
Sbjct 4801 ACCAACATATATAGCCTTTTATTATTTTTCTCTTCTTTTAAGTCAGTCTGTTATAAATTTTTTTTTAGTCCCAT 4874
Query 814 -------------------------------------------------------------------------- 813
Sbjct 4875 AAGCAGTAGACTCCCACAGAAAATTTCTTCAAAATTTTTTGGTGTTCCAATGAATCTGGGATGTAAACTCTGAA 4948
Query 814 -------------------------------------------------------------------------- 813
Sbjct 4949 TGTATTTATAACTATTTATTTCTGGATGGTCATTATCTTGTAGCCAAATTTGACAATATAAAGTAAGGAGCAAA 5022
Query 814 -------------------------------------------------------------------------- 813
Sbjct 5023 GTTACAGGCCAGTTTTTACTTGTTTGCCCTGAGGGAAAAATCCTTTTAAAAAAAATTTCTGGTTTTTATTGGAT 5096
Query 814 -------------------------------------------------------------------------- 813
Sbjct 5097 TTTTGTATTTTAAATTTCAAATATTTTTCTACATCAAACCTAGCAAAAATGGAGATGACGGTTTCTGATTTATA 5170
Query 814 -------------------------------------------------------------------------- 813
Sbjct 5171 ATAAATACTAGACAGTTTTCAGGCTCCTGTTAGACAAACACATTGATGAAGAAATTAGTCTTAATAGGATTGTA 5244
Query 814 -------------------------------------------------------------------------- 813
Sbjct 5245 GGCTGTGTAGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTGAAGATGACAGTTTTCTGTAACTACA 5318
Query 814 -------------------------------------------------------------------------- 813
Sbjct 5319 GCTTGGAAACTATGCAAATGGTCTAGATTCCTCAGAGCTCACATGATAGGATATAGTTAGTGATGACATTTTGC 5392
Query 814 -------------------------------------------------------------------------- 813
Sbjct 5393 TCTTCTTGTGGGAACACACACTTCAAGGAGGAGATAGTGACTTTGAGATAGGAACAGTTTAAGATGCAGTGTGA 5466
Query 814 -------------------------------------------------------------------------- 813
Sbjct 5467 GTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGACTGTGGGATGTGCTCTCAAGT 5540
Query 814 -------------------------------------------------------------------------- 813
Sbjct 5541 AGGACGTCATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCACTTTTTTTAAT 5614
Query 814 -------------------------------------------------------------------------- 813
Sbjct 5615 TTAATTTTATTTTTTATTTAAAGGAAGGAACAATAGCTAGGTAAGATTTTTATCAGCTTTCTCTGTCTGAATCC 5688
Query 814 -------------------------------------------------------------------------- 813
Sbjct 5689 AGTTTTTCCTCTGTCAGTCCTGGAAGCTTGAATAGAATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCTTT 5762
Query 814 -------------------------------------------------------------------------- 813
Sbjct 5763 TGTAACCTCCTGTCCCTCCTAAAACACGCCAACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAG 5836
Query 814 -------------------------------------------------------------------------- 813
Sbjct 5837 TCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCACTGGAGTGATTTCAGTGAATCAG 5910
Query 814 -------------------------------------------------------------------------- 813
Sbjct 5911 ACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACATTTCAT 5984
Query 814 -------------------------------------------------------------------------- 813
Sbjct 5985 ACATCCTTTGTGTACTCAGGATAAAGACTGATGTTTACTCTCTGGGCACTGTTGTAAGATAGGTTTTGTCAGAG 6058
Query 814 -------------------------------------------------------------------------- 813
Sbjct 6059 CATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAATAAAGAGTCTAGCCCT 6132
Query 814 -------------------------------------------------------------------------- 813
Sbjct 6133 CTCCTTTTAATGAACTTAACTCTCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCGCACATGGAAATGAGAG 6206
Query 814 -------------------------------------------------------------------------- 813
Sbjct 6207 CCCGGCGCATGGATTTTAATGTTTTTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACC 6280
Query 814 -------------------------------------------------------------------------- 813
Sbjct 6281 TAGTTTACTTGCCAGTCTCTTGTGTAAATTACAGTAAAACAAAGTAAATGAAATTTAAACAAAAAATAAATTTG 6354
Query 814 -------------- 813
Sbjct 6355 ATCACAAAATGCCA 6368
