Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02936
- Subject:
- NR_103837.2
- Aligned Length:
- 4263
- Identities:
- 1336
- Gaps:
- 2825
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCTTCCGGGTCGCGCTAGGCCGGGCTTGCGGCGGTTGTGCCGCATCTAGAGAGTCGGGGAGCCGCCCCCGCACC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGGCCTTCTCGCGCTGCCTGGTCGCTGGTGAAGCCCGCGGCGCGCGCCTCTCCCGGACCCTGCAGGGTAAAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATGTCACATGTCAGCATTTGTACCTGAAGTCAGCATGCAAAGTTCAGGGTACCTGGATGAATGCCAACTTTTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CATTTCCCATGTGTATCCTGTGACCATTCTATCTGGGAACATCCTTCAAAGAGTTCATGCATCTTACTGAGGAC 296
Query 1 -----------------------------------ATGTCACCGGTCTTTCCCATGTTAACAGTTCTGACCATG 39
|||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACCTGACCTTTTGAAGCTTCATAATTCACATCTAGATGTCACCGGTCTTTCCCATGTTAACAGTTCTGACCATG 370
Query 40 TTTTATTATATATGCCTTCGGCGCCGAGCCAGGACAGCTACAAGAGGAGAAATGATGAACACCCATAGAGCTAT 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTTTATTATATATGCCTTCGGCGCCGAGCCAGGACAGCTACAAGAGGAGAAATGATGAACACCCATAGAGCTAT 444
Query 114 AGAATCAAACAGCCAGACTTCCCCTCTCAATGCAGAGGTAGTCCAGTATGCCAAAGAAGTAGTGGATTTCAGTT 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGAATCAAACAGCCAGACTTCCCCTCTCAATGCAGAGGTAGTCCAGTATGCCAAAGAAGTAGTGGATTTCAGTT 518
Query 188 CCCATTATGGAAGTGAGAATAGTATGTCCTATACTATGTGGAATTTGGCTGGTGTACCAAATGTATTCCCAAGT 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCCATTATGGAAGTGAGAATAGTATGTCCTATACTATGTGGAATTTGGCTGGTGTACCAAATGTATTCCCAAGT 592
Query 262 TCTGGTGACTTTACTCAGACAGCTGTGTTTCGAACTTATGGGACATGGTGGGATCAGTGTCCTAGTGCTTCCTT 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCTGGTGACTTTACTCAGACAGCTGTGTTTCGAACTTATGGGACATGGTGGGATCAGTGTCCTAGTGCTTCCTT 666
Query 336 GCCATTCAAGAGGACGCCACCTAATTTTCAGAGCCAGGACTATGTGGAACTTACTTTTGAACAACAGGTGTATC 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCCATTCAAGAGGACGCCACCTAATTTTCAGAGCCAGGACTATGTGGAACTTACTTTTGAACAACAGGTGTATC 740
Query 410 CTACAGCTGTACATGTTCTAGAAACCTATCATCCCGGAGCAGTCATTAGAATTCTCGCTTGTTCTGCAAATCCT 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTACAGCTGTACATGTTCTAGAAACCTATCATCCCGGAGCAGTCATTAGAATTCTCGCTTGTTCTGCAAATCCT 814
Query 484 TATTCCCCAAATCCACCAGCTGAAGTAAGATGGGAGATTCTTTGGTCAGAGAGACCTACGAAGGTGAATGCTTC 557
|||||||||||||||||||||||||||
Sbjct 815 TATTCCCCAAATCCACCAGCTGAAGTA----------------------------------------------- 841
Query 558 CCAAGCTCGCCAGTTTAAACCTTGTATTAAGCAGATAAATTTCCCCACAAATCTTATACGACTGGAAGTAAATA 631
Sbjct 842 -------------------------------------------------------------------------- 841
Query 632 GTTCTCTTCTGGAATATTACACTGAATTAGATGCAGTTGTGCTACATGGTGTGAAGGACAAGCCAGTGCTTTCT 705
Sbjct 842 -------------------------------------------------------------------------- 841
Query 706 CTCAAGACTTCACTTATTGACATGAATGATATAGAAGATGATGCCTATGCAGAAAAGGATGGTTGTGGAATGGA 779
Sbjct 842 -------------------------------------------------------------------------- 841
Query 780 CAGTCTTAACAAAAAGTTTAGCAGTGCTGTCCTCGGGGAAGGGCCAAATAATGGGTATTTTGATAAACTACCTT 853
Sbjct 842 -------------------------------------------------------------------------- 841
Query 854 ATGAGCTTATTCAGCTGATTCTGAATCATCTTACACTACCAGACCTGTGTAGATTAGCACAGACTTGCAAACTA 927
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 ---AGCTTATTCAGCTGATTCTGAATCATCTTACACTACCAGACCTGTGTAGATTAGCACAGACTTGCAAACTA 912
Query 928 CTGAGCCAGCATTGCTGTGATCCTCTGCAATACATCCACCTCAATCTGCAACCATACTGGGCAAAACTAGATGA 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 CTGAGCCAGCATTGCTGTGATCCTCTGCAATACATCCACCTCAATCTGCAACCATACTGGGCAAAACTAGATGA 986
Query 1002 CACTTCTCTGGAATTTCTACAGTCTCGCTGCACTCTTGTCCAGTGGCTTAATTTATCTTGGACTGGCAATAGAG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 CACTTCTCTGGAATTTCTACAGTCTCGCTGCACTCTTGTCCAGTGGCTTAATTTATCTTGGACTGGCAATAGAG 1060
Query 1076 GCTTCATCTCTGTTGCAGGATTTAGCAGGTTTCTGAAGGTTTGTGGATCCGAATTAGTACGCCTTGAATTGTCT 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 GCTTCATCTCTGTTGCAGGATTTAGCAGGTTTCTGAAGGTTTGTGGATCCGAATTAGTACGCCTTGAATTGTCT 1134
Query 1150 TGCAGCCACTTTCTTAATGAAACTTGCTTAGAAGTTATTTCTGAGATGTGTCCAAATCTACAGGCCTTAAATCT 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TGCAGCCACTTTCTTAATGAAACTTGCTTAGAAGTTATTTCTGAGATGTGTCCAAATCTACAGGCCTTAAATCT 1208
Query 1224 CTCCTCCTGTGATAAGCTACCACCTCAAGCTTTCAACCACATTGCCAAGTTATGCAGCCTTAAACGACTTGTTC 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 CTCCTCCTGTGATAAGCTACCACCTCAAGCTTTCAACCACATTGCCAAGTTATGCAGCCTTAAACGACTTGTTC 1282
Query 1298 TCTATCGAACAAAAGTAGAG------------CAAA-----CAGCACTGCT-------CAGC------------ 1335
|||||||||||||||||||| ||.| ||.||.|||| .|||
Sbjct 1283 TCTATCGAACAAAAGTAGAGGTGAGAGTAATTCATAATTTTCATCATTGCTATTATGGTAGCCAACTGAAGATT 1356
Query 1336 ------------------------------------ATTTTGAA----------------CTTCTG--TTC--- 1352
|||||.|| |||||| |.|
Sbjct 1357 TGGTTTTCTGTAATTGCTCATAATAATGTGTTTTTTATTTTTAAATCAAGTTTATGATGCCTTCTGACTACTCT 1430
Query 1353 ---------AGAGC---TTCAGCACCTCAGTTTAGGCAGTTGTGTC---------ATGATT------------G 1393
||||| ||||| ||| ||..|.||||.|.|| |||.|| |
Sbjct 1431 GAAATCAATAGAGCTGATTCAG----TCA--TTGTGAAGTTATTTCAAACCTAATATGCTTTTAAATTATAAGG 1498
Query 1394 AAGA---------CTATG------------ATGTGATAGCTAGCATGATAGGAGCCAAGTGTAAAAAACTCCGG 1446
|| | ||||| .|||||| |||| ..||.|..||.|| |.||||||.|..|
Sbjct 1499 AA-ATGTTCTTCTCTATGCTCTTAAAATTTTTGTGAT-GCTA----TTTATGTCCCCAG-GAAAAAAAATAAG- 1564
Query 1447 ACCCTGGATCTGTGGAGATGTAAG--AATATTACT----GAGAATGGAATAGCAGAACTGGCTTCTGGGTGTCC 1514
|..|||.| ||.||||| || |.|.|| |.|||||.|.||| ||||..| |.||.|...
Sbjct 1565 -CGTTGGTT-------GAGGTAAGCCAA-AATGCTGGCAGGGAATGAATTAG-AGAAAGG-----TAGGAGGAT 1623
Query 1515 ACTACTGGAGGAGCTTGACCTTGGCTGGTGCCCAACTCTGCAG-----AGCAGCACCGGG-------TGCTTCA 1576
|.|| ||.|.||| |||.||.||| ||||| .|.||||..|.| |.||..|
Sbjct 1624 AATA-TGTAAGAG---GACATTTGCT------------TGCAGTGGGAGGAAGCAAAGTGATATTTATCCTGGA 1681
Query 1577 CCAGAC---------------TGGCACACCA------------------------------------------- 1592
|||||| ||..|.||||
Sbjct 1682 CCAGACTTGGGGGTTAAAATTTGTAATACCATAGTTAATGAGTCTCATTTAAAAAGGAATCATGTCATATATAT 1755
Query 1593 ----------GC----TCCCAAA---CT-----------------------TGCAAA--------AACTCTTTC 1618
|| ||.|.|| || ||||.| |||||||
Sbjct 1756 TAGTCTACTTGCTTTTTCACTAATATCTCTAGGACATGTTTCCAGGGTCAGTGCATATATTATCTAACTCTT-- 1827
Query 1619 TTACAGCTAATAGATCTGTGTGTGACAC------------AGACAT--------TGATGAATTGGCATGTAATT 1672
||||.| |||||| |||.|||.|.|| | |||| ||||.|| |||.||.||
Sbjct 1828 TTACTG-TAATAG---TGTATGTTATACCATAATCTATTTA-ACATTCTCCAAATGATCAA----CATTTAGTT 1892
Query 1673 GTACCAG----------GTTAC---------AGCA----------GCTGGACATA---------------TTAG 1702
.|.|||| .|||| |||| .|||..|||| ||.|
Sbjct 1893 TTTCCAGTTGTTTTCCTTTTACAAACTACCTAGCACTAACATTCTTCTGTGCATAGTTTTTTTTTTCTTTTTTG 1966
Query 1703 --------------------------------GAACAA--GAATGGT--------------------------- 1715
|..||| |.|||||
Sbjct 1967 AGACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCATGGTCTCAGCTCACTGAAACCTCCGCCTGAC 2040
Query 1716 ------AAG------TCCGGCATCCTTAAGAAAACTCCTG-GAATCTTG---TAAAG----------------- 1756
||| |||.||.|| |..|||||| |.||||.| ||.||
Sbjct 2041 CAGTTCAAGCGATTCTCCTGCCTC-------AGCCTCCTGAGTATCTGGGATTACAGGCACGTGCCACCATGCC 2107
Query 1757 ------ATCTT----TCTTTACTTGA---------------------TGTG--------------TCCTT-CTG 1784
||.|| |.||||.|.|| |||| |.||| ||.
Sbjct 2108 CAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGAGCCTGTGCATGGTTTTACACATACTTACTA 2181
Query 1785 TT--CGCAGATTGATAACAGAGCTGTGCTAGAACTG--AATGCAAGCTTTCCAAAAGTGT-------------- 1840
|| .||.|.|.||| ||| ||.|||||..|| |.|||.||.|| ||||.||
Sbjct 2182 TTACTGCTGTTGGAT---AGA---GTCCTAGAGGTGGTATTGCTAGGTT----AAAGAGTATGTACCTGGGCCC 2245
Query 1841 -------------------TCATAAAAAAGAGCTTT---ACTCAG----------------------------- 1863
|||||.| |||| .|||.|
Sbjct 2246 CTGTAGTACATACTGTTTGTCATATA------CTTTTTCCCTCTGCTGCATGCATATTGGCCTTCTTTCTATTC 2313
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 2314 CTTGAATGTTCTGACCTGGTCCCAGCTCAGGGCTTTTGTTTTTTTGCCTGTCTGGAATGTTTGTCTAGCTCATT 2387
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 2388 ATGGCTGCCCTTTTTTCAGCTCAGTGTTCAACTTGCATATTTTTTTAGAGATGGCTTCCTGGATACTGTAGCAC 2461
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 2462 CCCTTCTAGTTTGTTTCCTTCATATCATCAAGTTTCATTTCCTTTTTAACATCCTTGTCACTCTCTGAAATGAT 2535
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 2536 ACTTGTTTTCTTGCTTATTTTCTGTCTTCTCACATTAGGATATAATGGTAGAAGCCTTGTTGGTCTTTTTCATT 2609
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 2610 GCCATATTTCCAGAATCTAGAATAGTACTTGGTAAAGATTGGCCATTCAGTAAATATTTGTTAAGTAAATGAAT 2683
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 2684 AAAGATAACCAAATTACTTTTCCAAAATGATATACCAGTGACTTGGGAGACTGGATTAGTTCTGGTGGGAATGG 2757
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 2758 TTTGGTTCCCAAGAGAGCAGGTGGTTGTAAAGCAAGGATGCCTTTTGTGTTTGGCCTCTTTGTACTGTCTGCCT 2831
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 2832 CCCCTTTGATCTTCTGCCATGTTAAGACACAGCAGGAAAGCCCTTACCAGAAGCCGAGCAGATGACAGTGCCAT 2905
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 2906 GCCCCTTGAAATTCCCAGCCTCCATACCTGTGAGCTAAATAAACTCTTTTTCTTTATCAGCTACCCACCCTCAG 2979
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 2980 GTATTTTGTTATAGCAACACCGAATGAATTAAGATGGCATTATTCTCAATTTTGGGCAAAATATTTAGCTAGGC 3053
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3054 TTCAACAGGTGACCTGGCAGGGTGGAAAGAAGACTTTGATTCTAGTTCTAGCCCTGCCAGCAATAAGCTTGGTA 3127
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3128 ATCTAGGTGAAGACATTGTCTCAGATTTCCAGATTTTTTATTTGTAAAATGAAATAATTATTGTCCCTGAATGC 3201
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3202 CAGATGATATTAGCCTGTGTTTTCATTGGTCTGTGGTGAAATGACTCCCCATTTGTGTGGGTATAAAATTGCTA 3275
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3276 GCTATCTTTTCTTGGGTAGGACTGTTCATTCTGAAATTATGCCATACCTGCTTTTTACTGGCACATTTACTATT 3349
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3350 TTATGGGCCTAAGTACTATAAACGAAATCCTCTGAGCAAGGAGGATTTAAATGCCTCATTTAAAATTTTCTGAT 3423
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3424 TGTTTAATAAGAAATATAGCAGGCATAATTATTAAATGTAGTTATTAAATGAGCCTTTGAGAAGAAAAATAGGG 3497
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3498 TAAAAACCAAAAAAATATTAACTTGCTAGGCATCTTATATCTATTGTGGCTTGTGAAAATATATCCCATGAGAT 3571
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3572 GTTTTTGAAATGTTGTATAGTAATGTGATCTAAGTGTCAGAGAATTATTAGTCTACAGTTTTCTTAAATTTGTT 3645
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3646 TCAGACTGATAGATATGACCAAATTTTTTAAGTGTGATTTATGAGGATTAAGAAGATTTCATATCTGAAGAGTG 3719
Query 1864 -------------------------------------------------------------------------- 1863
Sbjct 3720 GAAATTTATACATATGTACCTAGGTCTAGATAGCATAAGCTCTGGTTTCCCTCAGTTACTTAAATACAGATGTA 3793
Query 1864 --------------------------------------------- 1863
Sbjct 3794 AAATCATTGTATGAATATATTAAATAAAATTTAGGTTGTACCCTC 3838
